text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122249 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured euryarchaeote

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122249_metabat2_3

characteristic: title


status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480088 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

unit: DD

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Oligoflexia bacterium

characteristic: organism

characteristic: project name

characteristic: sample derived from

text: uncultured Oligoflexia bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480088_concoct_21


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480089 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Oceanospirillaceae bacterium

text: uncultured Oceanospirillaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480089_metabat2_10

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480090 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Verrucomicrobiales bacterium

characteristic: organism

characteristic: project name

text: uncultured Verrucomicrobiales bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480090_binner23_Refined_14


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Gammaproteobacteria bacterium

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480088_binner123_Refined_6


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480103 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480103_concoct_41

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured euryarchaeote

characteristic: organism

characteristic: project name

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480089_maxbin2_5


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480112 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Halieaceae bacterium

characteristic: sample derived from

text: uncultured Halieaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480112_concoct_66


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Verrucomicrobiales bacterium

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

text: uncultured Verrucomicrobiales bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480112_binner12_Refined_7

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480116 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Southern Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Rhodobacterales bacterium

characteristic: organism

characteristic: project name

text: uncultured Rhodobacterales bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480116_metabat2_1


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480114 of study SRP278138.

text: go-ship

text: Southern Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Alphaproteobacteria bacterium

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480114_concoct_28


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480118 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Southern Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Sulfitobacter sp.

text: uncultured Sulfitobacter sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480118_binner123_Refined_8

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480117 of study SRP278138.

text: go-ship

text: Southern Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Polaribacter sp.

characteristic: organism

characteristic: project name

text: uncultured Polaribacter sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480117_concoct_34


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480120 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Southern Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Oceanospirillaceae bacterium

characteristic: sample derived from

text: uncultured Oceanospirillaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480120_metabat2_6


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Southern Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Alteromonas sp.

text: uncultured Alteromonas sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480118_binner12_Refined_10

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480122 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Southern Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Ketobacter sp.

characteristic: organism

characteristic: project name

text: uncultured Ketobacter sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480122_binner12_Refined_15


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Southern Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Cellvibrionales bacterium

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: sample derived from

text: uncultured Cellvibrionales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480118_concoct_43


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479845 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479845_concoct_22

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479884 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Actinomarinales bacterium

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479884_metabat2_3


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479890 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479890_binner13_Refined_2


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122196 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Acidimicrobiaceae bacterium

text: uncultured Acidimicrobiaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122196_binner13_Refined_2

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122252 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Trichodesmium sp.

characteristic: organism

characteristic: project name

text: uncultured Trichodesmium sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122252_concoct_47


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122253 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Flavobacteriales bacterium

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122253_binner12_Refined_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122263 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Trichodesmium sp.

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

text: uncultured Trichodesmium sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122263_concoct_14

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122261 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured euryarchaeote

characteristic: organism

characteristic: project name

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122261_binner123_Refined_3


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122266 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriales bacterium

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122266_binner13_Refined_1


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122268 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122268_concoct_26

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122264 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Poseidoniales archaeon

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122264_binner123_Refined_13


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480250 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480250_binner123_Refined_5


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480229 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480229_binner13_Refined_1

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480255 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured euryarchaeote

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480255_binner12_Refined_7


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480256 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480256_binner12_Refined_14


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480259 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480259_maxbin2_13

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480268 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480268_binner12_Refined_8


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480260 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured euryarchaeote

characteristic: sample derived from

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480260_binner12_Refined_9


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480269 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Poseidoniales archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480269_binner12_Refined_4

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480326 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Actinomarinales bacterium

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480326_maxbin2_1


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480319 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480319_binner12_Refined_16


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479939 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479939_concoct_33

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479938 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Synechococcus sp.

characteristic: organism

characteristic: project name

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479938_concoct_12


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479941 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479941_binner12_Refined_5


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479939_maxbin2_1

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479943 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Poseidoniales archaeon

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479943_concoct_11


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479962 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Saprospiraceae bacterium

characteristic: sample derived from

text: uncultured Saprospiraceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479962_binner123_Refined_1


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479947 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479947_binner23_Refined_8

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Marinagarivorans sp.

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: uncultured Marinagarivorans sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479962_binner12_Refined_2


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479962_concoct_35


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriaceae bacterium

text: uncultured Flavobacteriaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479962_concoct_26

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479970 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Synechococcus sp.

characteristic: organism

characteristic: project name

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479970_concoct_10


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479975 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479975_concoct_5


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Francisella sp.

text: uncultured Francisella sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479962_metabat2_3

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Poseidoniales archaeon

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479975_maxbin2_4


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479978 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Flavobacteriales bacterium

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479978_concoct_7


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479979 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriales bacterium

text: uncultured Flavobacteriales bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479979_concoct_0

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479979_binner12_Refined_10


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479985 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriaceae bacterium

characteristic: sample derived from

text: uncultured Flavobacteriaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479985_binner13_Refined_8


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479980 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Flavobacteriaceae bacterium

text: uncultured Flavobacteriaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479980_concoct_30

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479985_binner12_Refined_4


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Formosa sp.

characteristic: sample derived from

text: uncultured Formosa sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479985_metabat2_5


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Opitutae bacterium

text: uncultured Opitutae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479985_concoct_9

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479994 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Alcanivorax sp.

characteristic: organism

characteristic: project name

text: uncultured Alcanivorax sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479994_binner12_Refined_25


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479991 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479991_metabat2_3


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Opitutae bacterium

text: uncultured Opitutae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479994_concoct_17

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479994_maxbin2_12


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479996 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Actinomarinales bacterium

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479996_binner13_Refined_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480073 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Poseidoniales archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480073_binner12_Refined_2

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480074 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480074_concoct_16


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alteromonas sp.

characteristic: sample derived from

text: uncultured Alteromonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480073_concoct_49


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480076 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Magnetococcales bacterium

text: uncultured Magnetococcales bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480076_binner123_Refined_1

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480076_concoct_34


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480077 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480077_maxbin2_1


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480079 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Synechococcus sp.

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480079_concoct_3

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480086 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480086_binner13_Refined_4


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480085 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Poseidoniales archaeon

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480085_binner12_Refined_3


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480088 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Alcanivorax sp.

text: uncultured Alcanivorax sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480088_binner12_Refined_8

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: broad-scale environmental context

characteristic: collection date

unit: m

characteristic: depth

characteristic: environmental medium

text: not applicable

characteristic: geographic location (country and/or sea)

characteristic: local environmental context

text: marine metagenome

characteristic: organism

characteristic: project name

text: marine metagenome


characteristic: INSDC center name

text: public

text: This sample represents a metagenomic bin from the metagenomic sample ERS14694889

characteristic: description

text: not applicable

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: marine metagenome

text: marine metagenome


characteristic: ENA first public

text: public

text: This sample represents a metagenomic bin from the metagenomic sample ERS14694890

text: not applicable

text: marine metagenome

text: marine metagenome

characteristic: title


characteristic: ENA-CHECKLIST

text: Dept. of Earth and Environmental Sciences, Palaeontology & Geobiology

text: public

characteristic: INSDC status

text: Germany

text: Tethya minuta

text: Tethya minuta


text: barrnap (version 0.9)

characteristic: 16S recovery software

text: No

characteristic: 16s recovered

text: no

characteristic: 23s recovered

text: no

characteristic: 5s recovered

characteristic: GC content

text: CAU

text: public

text: Bowtie (version 2.2.5) with jgi_summarize_bam_contig_depths script from MetaBAT (version 2.12.1)

characteristic: MAG coverage software

characteristic: SRA accession

text: ena-SAMPLE-TAB-22-03-2024-10:43:23:827-115441

characteristic: Submitter Id

characteristic: assembly quality

text: metaSPAdes hybrid (SPAdes version 3.13.1)

characteristic: assembly software

text: coverage depth and k-mer binning. Scaffolds were filtered for min. length 1000bp and min. coverage 7.7815. Quality-controlled metagenomic reads were mapped back to the filtered scaffolds with Bowtie (version 2.2.5); the insert size was 0–1000 bp in very sensitive, non-deterministic, “fr” stranded mode with end-to-end alignment. Non-unique mappings and unaligned reads were discarded. The scaffold coverage depth was determined with the jgi_summarize_bam_contig_depths script from MetaBAT (version 2.12.1). Scaffolds were broken into 10 kbp chunks for CONCOCT.

characteristic: binning parameters

text: MetaBAT (version 2.12.1), CONCOCT (version 1.1.0), MaxBin (version 2.2.4), DASTool (version 1.1.2)

characteristic: binning software

text: host associated gut microbiome

characteristic: completeness score

text: CheckM (version 1.1.2)

characteristic: completeness software

characteristic: contamination score

text: MAG_BA_Lachnospiraceae_01: Metagenomic assembled genome (MAG) from colon contents of n=52, untreated, wild-type, male C57BL/6J/Ukj mice, aged 2-30 months. Full cohort assembly of all metagenomic samples assembled together from short and long read sequencing with metaSpades hybrid. Coverage and k-mer binning with MetaBAT (version 2.12.1), CONCOCT (version 1.1.0), and MaxBin (version 2.2.4) produced 252 bins which were refined into 181, high to medium quality MAGs via DASTool.

text: host associated gut microbiome

text: Germany

text: mouse colon contents

text: host associated gut microbiome

text: mouse gut metagenome

characteristic: metagenomic source

characteristic: number of standard tRNAs extracted

text: uncultured Lachnospiraceae bacterium

text: Baseline aging (BA); Aging-associated loss of metabolic host-microbiome-interactions in mice

text: ERS18444878,ERS18444879,ERS18444880,ERS18444881,ERS18444882,ERS18444883,ERS18444884,ERS18444885,ERS18444886,ERS18444887,ERS18444888,ERS18444889,ERS18444890,ERS18444891,ERS18444892,ERS18444893,ERS18444894,ERS18444895,ERS18444896,ERS18444897,ERS18444898,ERS18444899,ERS18444900,ERS18444901,ERS18444902,ERS18444903,ERS18444904,ERS18444905,ERS18444906,ERS18444907,ERS18444908,ERS18444909,ERS18444910,ERS18444911,ERS18444912,ERS18444913,ERS18444914,ERS18444915,ERS18444916,ERS18444917,ERS18444918,ERS18444919,ERS18444920,ERS18444921,ERS18444922,ERS18444923,ERS18444924,ERS18444925,ERS18444926,ERS18444927,ERS18444928,ERS18444929,ERS18590020,ERS18590021,ERS18590022,ERS18590023,ERS18590024,ERS18590025,ERS18590026,ERS18590027

characteristic: sample derived from

text: uncultured Lachnospiraceae bacterium

text: tRNAscan-SE (version 2.0.9)

characteristic: tRNA extraction software

text: GTDB-Tk, r214

characteristic: taxonomic classification

text: multi-marker approach

characteristic: taxonomic identity marker


text: barrnap (version 0.9)

characteristic: 16S recovery software

text: Yes

characteristic: 16s recovered

text: yes

characteristic: 23s recovered

text: no

characteristic: 5s recovered

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: GC content

text: CAU

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-22-03-2024-10:43:23:828-115442

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: host associated gut microbiome

characteristic: broad-scale environmental context

characteristic: collection date

text: CheckM (version 1.1.2)

text: MAG_BA_Lachnospiraceae_02: Metagenomic assembled genome (MAG) from colon contents of n=52, untreated, wild-type, male C57BL/6J/Ukj mice, aged 2-30 months. Full cohort assembly of all metagenomic samples assembled together from short and long read sequencing with metaSpades hybrid. Coverage and k-mer binning with MetaBAT (version 2.12.1), CONCOCT (version 1.1.0), and MaxBin (version 2.2.4) produced 252 bins which were refined into 181, high to medium quality MAGs via DASTool.

characteristic: description

text: host associated gut microbiome

characteristic: environmental medium

text: Germany

characteristic: geographic location (country and/or sea)

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: mouse colon contents

text: host associated gut microbiome

characteristic: local environmental context

text: mouse gut metagenome

text: uncultured Lachnospiraceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Lachnospiraceae bacterium

text: tRNAscan-SE (version 2.0.9)

text: GTDB-Tk, r214

text: multi-marker approach

characteristic: title