characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719539 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_binner23_Refined_62

characteristic: title


status: PUBLIC

tag: attribute

text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719505 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

unit: DD

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: project name

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_concoct_32


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719510 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured euryarchaeote

text: uncultured euryarchaeote

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719510_concoct_83

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719566 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719566_binner12_Refined_76


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719565 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Rhodospirillaceae bacterium

characteristic: sample derived from

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719565_concoct_98


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719364 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Methylococcales bacterium

text: uncultured Methylococcales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719364_concoct_52

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3720203 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3720203_concoct_32


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Peregrinibacteria bacterium

characteristic: sample derived from

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_concoct_81


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Planktomarina sp.

text: uncultured Planktomarina sp.

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719566_binner12_Refined_25

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719568 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Phycisphaerae bacterium

characteristic: organism

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: project name

text: uncultured Phycisphaerae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719568_concoct_108


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719566 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Halieaceae bacterium

characteristic: sample derived from

text: uncultured Halieaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719566_concoct_110


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Rhodospirillaceae bacterium

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719566_binner123_Refined_24

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719535 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Planctomycetaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Planctomycetaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719535_concoct_145


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719539 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Kordiimonadaceae bacterium

characteristic: sample derived from

text: uncultured Kordiimonadaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719539_binner13_Refined_67


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719565 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Rhodospirillaceae bacterium

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719565_binner123_Refined_49

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719566_concoct_45


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719533 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719533_concoct_60


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719504 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719504_binner23_Refined_17

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719369 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Gammaproteobacteria bacterium

characteristic: organism

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: project name

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719369_concoct_24


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719568 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriales bacterium

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719568_concoct_37


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Candidatus Melainabacteria bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719533_binner23_Refined_70

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Planctomycetaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Planctomycetaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719568_concoct_30


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719574 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Schleiferiaceae bacterium

characteristic: sample derived from

text: uncultured Schleiferiaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719574_binner13_Refined_65


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719365 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719365_concoct_2

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719625 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719625_binner13_Refined_54


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719539 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriaceae bacterium

characteristic: sample derived from

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719539_concoct_72


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Marinovum sp.

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

text: uncultured Marinovum sp.

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_binner13_Refined_68

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719567 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Phycisphaerae bacterium

characteristic: organism

characteristic: project name

text: uncultured Phycisphaerae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719567_binner12_Refined_30


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Cellvibrionales bacterium

characteristic: sample derived from

text: uncultured Cellvibrionales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719567_binner12_Refined_21


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719566 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719566_concoct_20

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724469 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Flavobacteriales bacterium

characteristic: organism

characteristic: project name

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724469_binner12_Refined_1


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719629 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719629_binner123_Refined_75


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Alphaproteobacteria bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719566_concoct_139

characteristic: title


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719574 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Micrococcales bacterium

characteristic: organism

characteristic: project name

text: uncultured Micrococcales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719574_binner12_Refined_78


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719625 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719625_binner12_Refined_43


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Fluviicola sp.

text: uncultured Fluviicola sp.

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719574_concoct_123

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724468 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724468_binner12_Refined_82


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Rhodospirillales bacterium

characteristic: sample derived from

text: uncultured Rhodospirillales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719629_binner12_Refined_32


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719695 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719695_binner23_Refined_32

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3725355 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3725355_binner12_Refined_33


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719656 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Flavobacteriaceae bacterium

characteristic: sample derived from

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719656_binner23_Refined_62


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3725728 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3725728_binner12_Refined_34

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724382 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Rhodospirillaceae bacterium

characteristic: organism

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: project name

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724382_concoct_63


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719696 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Campylobacteraceae bacterium

characteristic: sample derived from

text: uncultured Campylobacteraceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719696_binner23_Refined_20


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724190 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured euryarchaeote

text: uncultured euryarchaeote

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3724190_concoct_107

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719693 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719693_binner123_Refined_28


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: Candidatus Woesearchaeota archaeon

characteristic: sample derived from

text: Candidatus Woesearchaeota archaeon

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724382_concoct_12


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724311 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Kordiimonadaceae bacterium

text: uncultured Kordiimonadaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3724311_binner13_Refined_36

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724365 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Methylococcales bacterium

characteristic: organism

characteristic: project name

text: uncultured Methylococcales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724365_binner123_Refined_13


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724388 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured euryarchaeote

characteristic: sample derived from

text: uncultured euryarchaeote

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724388_metabat2_3


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3725731 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3725731_concoct_0

characteristic: title


text: EMG

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724645 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724645_binner123_Refined_59


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3725354 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3725354_binner12_Refined_70


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719629 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gemmatimonadales bacterium

text: uncultured Gemmatimonadales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719629_binner12_Refined_149

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719569 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Flavobacteriales bacterium

characteristic: organism

characteristic: project name

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719569_concoct_116


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719644 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719644_binner12_Refined_43


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719569_concoct_47

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719625 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719625_concoct_0


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719644_binner12_Refined_74


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719646 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719646_concoct_30

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719645 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Methylococcales bacterium

characteristic: organism

characteristic: project name

text: uncultured Methylococcales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719645_binner13_Refined_7


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719655 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured archaeon

characteristic: sample derived from

text: uncultured archaeon

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719655_concoct_4


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719656 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Glaciecola sp.

text: uncultured Glaciecola sp.

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719656_binner13_Refined_89

characteristic: title


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719566 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Oceanospirillales bacterium

characteristic: organism

characteristic: project name

text: uncultured Oceanospirillales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719566_concoct_92


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719565 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719565_concoct_50


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Ilumatobacter sp.

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

text: uncultured Ilumatobacter sp.

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719656_binner23_Refined_85

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719647 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Gammaproteobacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719647_binner23_Refined_32


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719655_concoct_65


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured euryarchaeote

text: uncultured euryarchaeote

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719656_binner12_Refined_70

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724508 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724508_metabat2_81


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724534 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Flavobacterium sp.

characteristic: sample derived from

text: uncultured Flavobacterium sp.

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724534_concoct_35


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3725355 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Bacteriovoracaceae bacterium

text: uncultured Bacteriovoracaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3725355_concoct_114

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719656 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Rhodobacterales bacterium

characteristic: organism

characteristic: project name

text: uncultured Rhodobacterales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719656_concoct_23


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3725355_binner13_Refined_7


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719574 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Flavobacteriaceae bacterium

text: uncultured Flavobacteriaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719574_concoct_141

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724648 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724648_binner13_Refined_36


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724646 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Candidatus Peribacteria bacterium

characteristic: sample derived from

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724646_concoct_20


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Candidatus Pelagibacter ubique

text: Candidatus Pelagibacter ubique

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3724646_concoct_70

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3725731 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3725731_binner12_Refined_73


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3725727 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3725727_metabat2_28


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3725726 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3725726_maxbin2_16

characteristic: title