status: PUBLIC

characteristic: External Id

text: Ito laboratory, General Systems Studies, The University of Tokyo, Graduate school of Arts and Sciences

characteristic: INSDC center name

characteristic: INSDC first public

characteristic: INSDC last update

characteristic: INSDC secondary accession

text: live

characteristic: INSDC status

text: MIGS.eu

characteristic: NCBI submission model

characteristic: NCBI submission package

characteristic: SRA accession

tag: attribute

characteristic: collection date

text: Keywords: GSC:MIxS;MIGS:6.0

characteristic: description

text: China:Hubei

characteristic: geo loc name

text: Geranium rosthornii

characteristic: organism

text: diploid

characteristic: ploidy

text: Chloroplast genome scequence of Geranium

characteristic: project name

text: sexual

characteristic: propagation

characteristic: sample name

text: Geranium cf. rosthornii chloroplast genome sequence

characteristic: title


characteristic: External Id

characteristic: INSDC center name

text: live

text: MIGS.eu

text: Keywords: GSC:MIxS;MIGS:6.0

text: Tajikistan

text: Geranium saxatile

text: diploid

text: sexual

text: Geranium cf. saxatile chloroplast genome sequence


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY HOHENHEIM

characteristic: INSDC last update

text: public

tag: Namespace:UNIVERSITY HOHENHEIM

characteristic: Submitter Id

text: chicken gut metagenome

text: chicken gut metagenome

text: GizzardMucosa


text: UNIVERSITY HOHENHEIM

text: public

characteristic: INSDC status

text: chicken gut metagenome

text: chicken gut metagenome

text: IleumDigesta


text: UNIVERSITY HOHENHEIM

text: public

characteristic: SRA accession

text: chicken gut metagenome

text: chicken gut metagenome

text: IleumMucosa


text: UNIVERSITY HOHENHEIM

text: public

text: chicken gut metagenome

text: chicken gut metagenome

text: CropMucosa


status: PRIVATE

text: not collected

characteristic: accession name

text: not collected

characteristic: age

characteristic: biological material altitude

characteristic: biological material coordinates uncertainty

text: Germany

characteristic: biological material geographic location

characteristic: biological material id

characteristic: biological material latitude

characteristic: biological material longitude

text: tetraploid

characteristic: biological material ploidy

text: not applicable

characteristic: biological material preprocessing

characteristic: checklist

text: not collected

characteristic: collection date

text: Hordeum

characteristic: genus

text: not collected

characteristic: geographic location (country and/or sea)

text: greenhouse

characteristic: growth facility

text: Assembly

characteristic: library type

text: not collected

characteristic: material source altitude

text: not collected

characteristic: material source description

text: not collected

characteristic: material source geographic location

text: not collected

characteristic: material source latitude

text: not collected

characteristic: material source longitude

text: Hordeum bulbosum

text: leaf

characteristic: plant anatomical entity

text: not collected

characteristic: plant structure development stage

text: Hbulbosum pangenome

text: not collected

characteristic: sample description

text: bulbosum

characteristic: species


characteristic: SRA accession

text: not collected

characteristic: accession name

text: not collected

characteristic: age

characteristic: biological material altitude

characteristic: biological material coordinates uncertainty

text: Germany

characteristic: biological material geographic location

characteristic: biological material id

characteristic: biological material latitude

characteristic: biological material longitude

text: tetraploid

characteristic: biological material ploidy

text: not applicable

text: not collected

text: Hordeum

text: Greece

text: greenhouse

text: Assembly

text: not collected

text: not collected

text: Greece

text: not collected

text: not collected

text: Hordeum bulbosum

characteristic: organism

text: leaf

text: not collected

text: Hbulbosum pangenome

characteristic: project name

text: not collected

text: bulbosum


text: not collected

text: not collected

text: Germany

text: diploid

text: not applicable

characteristic: biological material preprocessing

characteristic: checklist

text: not collected

characteristic: collection date

text: Hordeum

characteristic: genus

text: Greece

characteristic: geographic location (country and/or sea)

text: greenhouse

characteristic: growth facility

text: Assembly

characteristic: library type

text: not collected

characteristic: material source altitude

text: not collected

characteristic: material source description

text: Greece

characteristic: material source geographic location

text: not collected

characteristic: material source latitude

text: not collected

characteristic: material source longitude

text: Hordeum bulbosum

text: leaf

text: not collected

text: Hbulbosum pangenome

text: not collected

text: bulbosum


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: UNIVERSITY OF ST ANDREWS

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: NHS Scotland

text: Isolate

characteristic: description

text: United Kingdom

text: recovered

characteristic: host disease outcome

text: gonorrhea

characteristic: host disease status

text: Homo sapiens

characteristic: host scientific name

characteristic: isolate

text: Urethral swab

characteristic: isolation source host-associated

text: Neisseria gonorrhoeae

text: Neisseria gonorrhoeae

characteristic: title

text: travel-related

characteristic: travel-relation


text: UNIVERSITY OF ST ANDREWS

text: public

text: NHS Scotland

characteristic: collection date

text: Isolate

text: United Kingdom

characteristic: geographic location (country and/or sea)

text: recovered

text: gonorrhea

text: Homo sapiens

text: Cervical swab

text: Neisseria gonorrhoeae

characteristic: organism

text: Neisseria gonorrhoeae

text: not travel-related


characteristic: ENA first public

text: public

text: ena-SAMPLE-TAB-01-03-2024-06:51:06:555-71698

text: Germany

text: not applicable

characteristic: host health state

text: Homo sapiens

text: human

text: Staphylococcus aureus

text: Staphylococcus aureus

characteristic: serovar

characteristic: strain


characteristic: ENA-CHECKLIST

text: Ifremer

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: SeBiMER

characteristic: broker name

text: Ifremer

characteristic: collecting institution

text: Chin-Long Ky

characteristic: collector name

text: Pacific pearl-oyster

characteristic: common name

text: adult

text: wild specimen

characteristic: experimental factor

text: French Polynesia

unit: m

characteristic: geographic location (depth)

characteristic: geographic location (elevation)

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Rikitea, Gambier archipelago

characteristic: geographic location (region and locality)

text: eukaryote

characteristic: investigation type

text: wild individual

text: lagoon of rikitea

text: Pinctada margaritifera

text: diploid

characteristic: ploidy

characteristic: project name

text: An individual from Rikitea, Gambier

text: Pinctada margaritifera

text: hermaphrodite

characteristic: sex

text: adductor muscle

text: Short and long read used for genome contig production


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724190 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Micromonas commoda

characteristic: organism

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: sample derived from

text: Micromonas commoda

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3724190_concoct_134

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719566 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

text: marine metagenome

text: Micromonas commoda

characteristic: project name

text: Micromonas commoda

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719566_metabat2_96


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719539 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriales bacterium

characteristic: organism

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719539_binner12_Refined_100


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_binner13_Refined_84

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719506 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured euryarchaeote

characteristic: organism

characteristic: project name

text: uncultured euryarchaeote

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719506_binner13_Refined_92


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719544 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719544_binner13_Refined_49


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719279 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719279_concoct_40

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Gammaproteobacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719539_binner13_Refined_47


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Rhodospirillaceae bacterium

characteristic: sample derived from

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719544_concoct_42


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719568 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Opitutae bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

text: uncultured Opitutae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719568_concoct_99

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719505 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Prolixibacteraceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Prolixibacteraceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_concoct_111


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719545 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Planctomycetaceae bacterium

characteristic: sample derived from

text: uncultured Planctomycetaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719545_binner13_Refined_71


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719539 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_concoct_17

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719544 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Planctomycetaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Planctomycetaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719544_binner12_Refined_113


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Rhodopirellula sp.

characteristic: sample derived from

text: uncultured Rhodopirellula sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719545_binner13_Refined_75


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719505_binner123_Refined_33

characteristic: title


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719574 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Microbacteriaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Microbacteriaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719574_binner12_Refined_79


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719368 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Campylobacteraceae bacterium

characteristic: sample derived from

text: uncultured Campylobacteraceae bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719368_concoct_34


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719505 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Nitrospina sp.

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

text: uncultured Nitrospina sp.

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719505_binner13_Refined_91

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719539_binner123_Refined_27


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719563 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Rhodospirillaceae bacterium

characteristic: sample derived from

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719563_concoct_5


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719539 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Alphaproteobacteria bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_maxbin2_33

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Phycisphaerales bacterium

characteristic: organism

characteristic: project name

text: uncultured Phycisphaerales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_metabat2_4


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719562 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Bacillus sp.

characteristic: sample derived from

text: uncultured Bacillus sp.

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719562_concoct_5


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured euryarchaeote

text: uncultured euryarchaeote

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_binner23_Refined_66

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719545 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Rhodospirillaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719545_metabat2_4


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719505 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Clostridia bacterium

characteristic: sample derived from

text: uncultured Clostridia bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_concoct_8


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Rhodobacterales bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

text: uncultured Rhodobacterales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_concoct_133

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Acidimicrobiaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Acidimicrobiaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719539_binner13_Refined_83


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Rhodospirillaceae bacterium

characteristic: sample derived from

text: uncultured Rhodospirillaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719562_concoct_113


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719646 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Acidiferrobacteraceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719646_concoct_7

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724310 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Bdellovibrionales bacterium

characteristic: organism

characteristic: project name

text: uncultured Bdellovibrionales bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724310_binner23_Refined_26


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719562 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Candidatus Woesearchaeota archaeon

characteristic: sample derived from

text: Candidatus Woesearchaeota archaeon

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719562_concoct_10


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719539 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Burkholderiales bacterium

text: uncultured Burkholderiales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_concoct_135

characteristic: title


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719545 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Planctomycetaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Planctomycetaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719545_binner12_Refined_59


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719566 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured euryarchaeote

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: sample derived from

text: uncultured euryarchaeote

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719566_binner13_Refined_14


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_binner123_Refined_24

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719574 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Cellvibrionales bacterium

characteristic: organism

characteristic: project name

text: uncultured Cellvibrionales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719574_binner12_Refined_32


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719505 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_concoct_113


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Opitutaceae bacterium

text: uncultured Opitutaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_metabat2_52

characteristic: title


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Desulfobacteraceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Desulfobacteraceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_binner13_Refined_55


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719535 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Flavobacteriales bacterium

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719535_concoct_12


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719566_binner12_Refined_5

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719544 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: organism

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719544_binner13_Refined_46


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719545 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Phycisphaerae bacterium

characteristic: sample derived from

text: uncultured Phycisphaerae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719545_concoct_51


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719565 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Lentimicrobiaceae bacterium

text: uncultured Lentimicrobiaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719565_binner12_Refined_77

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719544_binner12_Refined_135


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719539 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured euryarchaeote

characteristic: sample derived from

text: uncultured euryarchaeote

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719539_concoct_136


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719505 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719505_concoct_29

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719478 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Opitutae bacterium

characteristic: organism

characteristic: project name

text: uncultured Opitutae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719478_concoct_13


text: EMG

text: public

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719510 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Thiotrichales bacterium

characteristic: sample derived from

text: uncultured Thiotrichales bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719510_maxbin2_3


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Flavobacteriales bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719539_binner13_Refined_55

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719625 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719625_binner12_Refined_134


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719565 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Gammaproteobacteria bacterium

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719565_concoct_124


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719505_concoct_100

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3724308 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Oceanospirillaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Oceanospirillaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3724308_binner123_Refined_48


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719657 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: sample derived from

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719657_concoct_154


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719504 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719504_binner13_Refined_5

characteristic: title


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719478 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Acidiferrobacteraceae bacterium

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719478_maxbin2_11


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719505 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_maxbin2_25


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719566 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Puniceispirillum sp.

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719566_concoct_145

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719365 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Oceanospirillaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Oceanospirillaceae bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719365_concoct_13


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719511 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719511_metabat2_12


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Flavobacteriales bacterium

text: uncultured Flavobacteriales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719566_maxbin2_15

characteristic: title


text: EMG

text: public

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719657 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719657_binner12_Refined_123


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719478 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Rhodospirillales bacterium

characteristic: sample derived from

text: uncultured Rhodospirillales bacterium

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719478_binner12_Refined_80


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719505 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719505_concoct_110

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719464 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured archaeon

characteristic: organism

characteristic: project name

text: uncultured archaeon

text: Illumina HiSeq 2000

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719464_concoct_71


text: EMG

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Candidatus Woesearchaeota archaeon

characteristic: sample derived from

text: Candidatus Woesearchaeota archaeon

text: Illumina HiSeq 2000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719505_concoct_78


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719545 of study SRP043213.

text: fjord

text: not provided

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Opitutales bacterium

text: uncultured Opitutales bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719545_concoct_26

characteristic: title


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719568 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719568_binner13_Refined_36


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719565 of study SRP043213.

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719565_binner13_Refined_78


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR3719504 of study SRP043213.

characteristic: description

text: fjord

characteristic: environmental medium

text: not provided

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina HiSeq 2000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR3719504_binner123_Refined_19

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: water

text: EBI-EMG

characteristic: broker name

text: not provided

text: fjord

text: Canada

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

text: marine metagenome

text: marine

text: marine metagenome

text: uncultured Nitrospinaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Nitrospinaceae bacterium

text: Illumina HiSeq 2500

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719565_binner13_Refined_76


text: EMG

text: public

text: default

characteristic: binning software

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

text: not provided

characteristic: collection date

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

characteristic: description

text: fjord

characteristic: environmental medium

text: Canada

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: marine

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Planctomycetaceae bacterium

text: Saanich Inlet is a seasonally anoxic fjord opening to the Strait of Georgia on the southeast coast of Vancouver Island, British Columbia. It is approximately 24 kilometers long with a maximal basin depth of 234 meters and receives limited freshwater input from the surrounding watershed. A shallow glacial entrance sill 75 meters deep restricts circulation within interior and basin waters for most of the year. During spring and summer months, restricted circulation combined with high levels of primary productivity in surface waters lead to oxygen loss with concomitant water column stratification indicated by accumulation of methane (CH4), Ammonia (NH3) and Hydrogen Sulfide (H2S). In late summer and fall, oxygenated nutrient-rich ocean waters upwelling through the Strait cascade into Saanich Inlet shoaling anoxic bottom waters upward and transforming the redox chemistry of the water column. This process is stable on decadal time scales exhibiting a relatively narrow deviation in the depth distribution of the oxycline at different times of year. The recurring seasonal development of water column anoxia followed by deep-water renewal enables spatiotemporal profiling of microbial community structure and function across a wide range of water column redox states.

characteristic: sample derived from

text: uncultured Planctomycetaceae bacterium

text: Illumina HiSeq 2500

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR3719568_binner12_Refined_22