text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Poseidoniales archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122036_maxbin2_6

characteristic: title


status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480345 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

unit: DD

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Opitutae bacterium

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

characteristic: sample derived from

text: uncultured Opitutae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480345_binner12_Refined_5


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122278 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Acidimicrobiales bacterium

text: uncultured Acidimicrobiales bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122278_binner12_Refined_29

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480348 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Prochlorococcus sp.

characteristic: organism

characteristic: project name

text: uncultured Prochlorococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480348_binner13_Refined_1


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480361 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Opitutae bacterium

characteristic: sample derived from

text: uncultured Opitutae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480361_concoct_45


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480358 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Actinomarinales bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480358_metabat2_2

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122036 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured euryarchaeote

characteristic: organism

characteristic: project name

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122036_binner12_Refined_4


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480362 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Pseudoalteromonas sp.

characteristic: sample derived from

text: uncultured Pseudoalteromonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480362_binner123_Refined_10


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122271 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122271_binner13_Refined_2

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479788 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479788_metabat2_5


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479794 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Campylobacterales bacterium

characteristic: sample derived from

text: uncultured Campylobacterales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479794_binner13_Refined_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479796 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriaceae bacterium

text: uncultured Flavobacteriaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479796_concoct_36

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479795 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Synechococcus sp.

characteristic: organism

characteristic: project name

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479795_concoct_24


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479805 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Vibrio harveyi

characteristic: sample derived from

text: Vibrio harveyi

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479805_maxbin2_2


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479814 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Poseidoniales archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479814_binner123_Refined_6

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479805_concoct_24


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured euryarchaeote

characteristic: sample derived from

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479814_binner13_Refined_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479819 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479819_binner12_Refined_5

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479820 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479820_maxbin2_4


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479814_concoct_22


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479876 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479876_concoct_43

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479900 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Southern Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479900_metabat2_5


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479897 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Planctomycetaceae bacterium

characteristic: sample derived from

text: uncultured Planctomycetaceae bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479897_metabat2_4


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479901 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Southern Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Flavobacteriaceae bacterium

text: uncultured Flavobacteriaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479901_binner23_Refined_6

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479903 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Rhodobacterales bacterium

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: uncultured Rhodobacterales bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479903_binner12_Refined_5


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Southern Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479900_concoct_23


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479905 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479905_concoct_37

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479918 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured euryarchaeote

characteristic: organism

characteristic: project name

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479918_binner123_Refined_2


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479911 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Cellvibrionales bacterium

characteristic: sample derived from

text: uncultured Cellvibrionales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479911_binner12_Refined_9


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Poseidoniales archaeon

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479918_metabat2_7

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479919 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Flavobacteriaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Flavobacteriaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479919_binner12_Refined_28


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Cellvibrionales bacterium

characteristic: sample derived from

text: uncultured Cellvibrionales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479919_maxbin2_1


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479921 of study SRP278138.

text: go-ship

text: Pacific Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Synechococcus sp.

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479921_concoct_7

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479923 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Puniceicoccaceae bacterium

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: uncultured Puniceicoccaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479923_maxbin2_2


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479933 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Deferribacteres bacterium

characteristic: sample derived from

text: uncultured Deferribacteres bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479933_maxbin2_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479922 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Pacific Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Puniceicoccaceae bacterium

text: uncultured Puniceicoccaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479922_concoct_25

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479933_metabat2_5


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479937 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: sample derived from

text: uncultured bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479937_concoct_7


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479888 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479888_binner12_Refined_4

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479897 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Synechococcus sp.

characteristic: organism

characteristic: project name

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479897_metabat2_3


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479895 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Poseidoniales archaeon

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12479895_binner123_Refined_6


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122146 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Synechococcus sp.

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122146_concoct_47

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122150 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122150_concoct_3


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122161 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Gammaproteobacteria bacterium

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122161_metabat2_3


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122151 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122151_concoct_14

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122179 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122179_concoct_2


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122166 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122166_concoct_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12479997 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479997_concoct_11

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122177 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured bacterium

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122177_binner12_Refined_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480004 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Actinomarinales bacterium

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480004_metabat2_3


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12479997_concoct_48

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480037 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480037_metabat2_1


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480014 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Pseudoalteromonas sp.

characteristic: sample derived from

text: uncultured Pseudoalteromonas sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480014_metabat2_3


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480052 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480052_concoct_0

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480065 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Flammeovirgaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Flammeovirgaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480065_binner23_Refined_10


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122132 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Poseidoniales archaeon

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122132_metabat2_4


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480071 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480071_binner12_Refined_1

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122137 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122137_concoct_64


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122118 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Prochlorococcus sp.

characteristic: sample derived from

text: uncultured Prochlorococcus sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122118_binner123_Refined_1


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Alphaproteobacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122137_metabat2_7

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122139 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Puniceicoccaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Puniceicoccaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122139_concoct_37


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Candidatus Nitrosopelagicus sp.

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122139_concoct_17


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122140 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured euryarchaeote

text: uncultured euryarchaeote

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122140_concoct_29

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122143 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122143_concoct_13


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Flavobacteriales bacterium

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: sample derived from

text: uncultured Flavobacteriales bacterium

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122139_concoct_40


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122144 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Synechococcus sp.

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122144_binner13_Refined_5

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Puniceicoccaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Puniceicoccaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122144_binner12_Refined_2


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: MGnify-genomes-generation-pipeline_v1.0.0

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Synechococcus sp.

characteristic: sample derived from

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122143_metabat2_2


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480156 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Gammaproteobacteria bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480156_concoct_33

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122148 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Puniceicoccaceae bacterium

characteristic: organism

characteristic: project name

text: uncultured Puniceicoccaceae bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122148_concoct_1


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480165 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Rhodobacterales bacterium

characteristic: sample derived from

text: uncultured Rhodobacterales bacterium

text: Illumina HiSeq 4000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480165_binner12_Refined_1


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480170 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Vibrio coralliilyticus

text: Vibrio coralliilyticus

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480170_concoct_26

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480198 of study SRP278138.

text: go-ship

text: Indian Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Actinomarinales bacterium

characteristic: organism

text:
The Global Ocean Shipboard Hydrographic Investigations Program (GO-SHIP) is a ship-based global survey of ocean hydrographic sections, which are repeatedly measured on a decadal time scale. The program covers a suite of physical (light, heat, currents, water column structure, etc.) and chemical (nutrients, oxygen, dissolved organic and inorganic carbon, pH, etc.) state variables over the full ocean water column, and in areas of the ocean inaccessible to other platforms. The principal scientific objectives for GO-SHIP are: (1) understanding and documenting the large-scale ocean water property distributions, their changes, and drivers of those changes, and (2) addressing questions of how a future ocean will increase in dissolved inorganic carbon, become more acidified and more stratified, and experience changes in circulation and ventilation processes due to global warming and altered water cycle.

The vision of the biological GO-SHIP initiative, or "Bio-GO-SHIP," is to develop a deep understanding of the link between the physio-chemical environment and global ocean plankton diversity, abundance, and biogeochemical roles in the context of a changing ocean. This will be achieved through systematic, high-quality, and calibrated sampling of marine 'omics products.

In this BioProject, we aim to provide a singular resource for Bio-GO-SHIP 'omics datasets. We also provide appropriate metadata such that the 'omics data may be linked to the broad range of state variables measured by GO-SHIP and associated oceanographic transects.

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480198_binner23_Refined_5


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480201 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Indian Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured Synechococcus sp.

characteristic: sample derived from

text: uncultured Synechococcus sp.

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480201_maxbin2_4


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

text: MGnify-genomes-generation-pipeline_v1.0.0

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12480209 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: Alteromonas macleodii

text: Alteromonas macleodii

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR12480209_binner123_Refined_3

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: uncultured bacterium

characteristic: organism

characteristic: project name

text: uncultured bacterium

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR12480209_concoct_16


text: EMG

characteristic: INSDC center name

text: public

text: Many fragments with little to no review of assembly other than reporting of standard assembly statistics

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122087 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

text: uncultured Candidatus Poseidoniales archaeon

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122087_concoct_35


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122109 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

text: Illumina NovaSeq 6000

text: multi-marker approach

characteristic: taxonomic identity marker

text: Metagenome-assembled genome: SRR13122109_concoct_43

characteristic: title


text: EMG

characteristic: INSDC center name

text: public

characteristic: assembly quality

characteristic: assembly software

text: default

characteristic: binning parameters

characteristic: binning software

text: water

text: EBI-EMG

characteristic: broker name

characteristic: completeness score

characteristic: completeness software

characteristic: contamination score

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122091 of study SRP278138.

text: go-ship

text: Atlantic Ocean

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: metagenome-assembled genome

characteristic: investigation type

text: marine metagenome

text: ocean

text: marine metagenome

characteristic: organism

characteristic: project name

text: Illumina NovaSeq 6000

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122091_concoct_29


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: EMG

text: public

characteristic: INSDC status

characteristic: SRA accession

characteristic: Submitter Id

text: default

text: water

characteristic: broad-scale environmental context

text: EBI-EMG

characteristic: collection date

text: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR13122114 of study SRP278138.

characteristic: description

text: go-ship

characteristic: environmental medium

text: Atlantic Ocean

characteristic: geographic location (country and/or sea)

text: metagenome-assembled genome

text: marine metagenome

text: ocean

characteristic: local environmental context

text: marine metagenome

characteristic: metagenomic source

characteristic: sample derived from

text: Illumina NovaSeq 6000

characteristic: sequencing method

text: multi-marker approach

text: Metagenome-assembled genome: SRR13122114_maxbin2_5