E-MTAB-13126:Sample 1

status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

characteristic: External Id

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13126:Sample 1

tag: Namespace:Center for Omics Sciences, IRCCS San Raffaele Hospital

characteristic: Submitter Id

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: Fresh tumor specimens obtained from patients with liver metastatic gastrointestinal cancers were used immediately after surgery. Tissues were minced, conditioned in PBS/5mM EDTA and digested in a solution composed of PBS/1mM EDTA, 2X TrypLE™ Select Enzyme and DNAse I for 1h at 37°C. Dissociated cells were collected, resuspended in 120μl growth factor reduced Matrigel™, seeded in single domes in 24-well flat bottom cell culture plate and, after dome solidification, overlaid with 1ml of complete human organoid medium and medium replaced every two/three days. PDOs were dissociated to single cells either for passaging after reaching confluence or for the subsequent downstream applications by mechanical and enzymatic digestion. PDOs were retrieved from Matrigel™ in a solution composed of PBS/1mM EDTA and 1X TrypLE™ Select Enzyme, incubated for 20 min at 37 °C then dissociated to single cells by pipetting. Cells were harvested, resuspended in growth factor reduced Matrigel™ Nucleic acids were directly processed on permeabilized nuclei following a modification of the standard ATAC-seq protocol (doi: 10.1002/0471142727.mb2129s109) detailed in “Nuclei Isolation for Single Cell ATAC Sequencing” protocol CG000169, Rev D (10X Genomics). Target nuclei recovery was 5’000 nuclei Single-cell ATAC-seq and GET-seq were performed on Chromium platform (10x Genomics) following “Chromium Single Cell ATAC Reagent Kits” user manual version CG000168 Rev C. For GET-seq protocol, Tn5 and TnH were used in substitution of the 10X ATAC enzyme (10X Genomics) in the transposition mix assembly step. When a sequential Tn5 to TnH reaction was performed, a transposition mix containing 1.5 uL of Tn5 was incubated 30 min at 37 °C, then 1.5 uL of TnH was added and the reaction was continued for a total of 1 h incubation.

characteristic: description

text: adult

characteristic: developmental stage

text: colorectal cancer

characteristic: disease

text: wild type genotype

characteristic: genotype

text: not collected

characteristic: geographic location (country and/or sea)

text: organoid

characteristic: growth condition

text: not applicable

characteristic: isolate

text: liver

characteristic: metastatic site

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: liver

characteristic: organism part

text: neoplasm

characteristic: sampling site

text: Homo sapiens

text: Sample 1

characteristic: title


E-MTAB-13126_3:Sample 1

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: External Id

text: Center for Omics Sciences, IRCCS San Raffaele Hospital

characteristic: INSDC center name

characteristic: INSDC last update

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-13126_3:Sample 1

text: ArrayExpress

text: not collected

text: human

text: adult

text: colorectal cancer

text: wild type genotype

text: not collected

text: organoid

text: not applicable

text: liver

text: Homo sapiens

text: Homo sapiens

text: liver

text: neoplasm

text: Homo sapiens

text: Sample 1


characteristic: CheckV score

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

text: public

text: Absent

characteristic: Insertion Sequences Transposons

text: Virulent 99

characteristic: Lifestyle

text: Absent

characteristic: Lysogeny related genes

text: dsDNA

characteristic: Nucleic acid type

characteristic: Number of predicted tail depolymerases

characteristic: Predicted ORFs

characteristic: Predicted ORFs ncbi

text: Absent

characteristic: Resistance genes

characteristic: Submitter Id

text: Absent

characteristic: Virulence genes

text: HUN-REN BRC

characteristic: collecting institution

characteristic: collection date

text: Balint Eszenyi Gabor Apjok Hiba Hadj Mehdi Koncz Mihaly

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: Acinetobacter phage Fanak

characteristic: description

text: Hungary

unit: DD

text: not provided

characteristic: geographic location (region and locality)

unit: centuries

characteristic: host age

text: other

characteristic: host behaviour

text: Acinetobacter baumannii

characteristic: host common name

text: not provided

characteristic: host health state

text: Acinetobacter baumannii

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: not provided

text: not provided

characteristic: isolation source host-associated

text: not provided

characteristic: isolation source non-host-associated

text: Acinetobacter phage vB_AbaP_Fanak

text: Acinetobacter phage vB_AbaP_Fanak

text: not provided

characteristic: serotype (required for a seropositive sample)

text: Acinetobacter phage Fanak

text: not provided

characteristic: virus identifier


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

characteristic: Insertion Sequences Transposons

text: Temperate 61

characteristic: Lifestyle

text: Absent

characteristic: Lysogeny related genes

text: dsDNA

characteristic: Nucleic acid type

characteristic: Number of predicted tail depolymerases

characteristic: Predicted ORFs

characteristic: Predicted ORFs ncbi

text: Absent

characteristic: Resistance genes

characteristic: SRA accession

characteristic: Submitter Id

text: Absent

characteristic: Virulence genes

text: HUN-REN BRC

characteristic: collecting institution

text: not provided

text: Acinetobacter phage Highwayman

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: other

text: Acinetobacter baumannii

text: not provided

text: Acinetobacter baumannii

text: not provided

text: Aci 3

text: not provided

characteristic: isolate

text: not provided

text: not provided

text: Acinetobacter phage vB_AbaM_Highwayman

characteristic: organism

text: Acinetobacter phage vB_AbaM_Highwayman

text: not provided

text: Acinetobacter phage Highwayman

characteristic: title

text: not provided


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

text: Virulent 92

text: Absent

text: dsDNA

text: Absent

text: Absent

text: HUN-REN BRC

characteristic: collection date

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: Acinetobacter phage KissB

characteristic: description

text: Hungary

text: not provided

characteristic: geographic location (region and locality)

characteristic: host age

text: other

characteristic: host behaviour

text: Acinetobacter baumannii

characteristic: host common name

text: not provided

characteristic: host health state

text: Acinetobacter baumannii

characteristic: host scientific name

text: not provided

characteristic: host sex

text: Aci 131_Belgrade14

characteristic: host subject id

text: not provided

text: not provided

characteristic: isolation source host-associated

text: not provided

characteristic: isolation source non-host-associated

text: Acinetobacter phage vB_AbaM_KissB

text: Acinetobacter phage vB_AbaM_KissB

text: not provided

characteristic: serotype (required for a seropositive sample)

text: Acinetobacter phage KissB

text: not provided

characteristic: virus identifier


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

characteristic: Insertion Sequences Transposons

text: Virulent 67

characteristic: Lifestyle

text: Absent

characteristic: Lysogeny related genes

text: dsDNA

characteristic: Nucleic acid type

characteristic: Number of predicted tail depolymerases

characteristic: Predicted ORFs

characteristic: Predicted ORFs ncbi

text: Absent

characteristic: Resistance genes

characteristic: SRA accession

characteristic: Submitter Id

text: Absent

characteristic: Virulence genes

text: HUN-REN BRC

characteristic: collecting institution

text: not provided

text: Acinetobacter phage Konradin_v2

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: other

text: Acinetobacter baumannii

text: not provided

text: Acinetobacter baumannii

text: not provided

text: Aci 222

text: not provided

characteristic: isolate

text: not provided

text: not provided

text: Acinetobacter phage vB_AbaM_Konradin-v2

characteristic: organism

text: Acinetobacter phage vB_AbaM_Konradin-v2

text: not provided

text: Acinetobacter phage Konradin_v2

characteristic: title

text: not provided


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

text: Virulent 64

text: Absent

text: dsDNA

text: Absent

text: Absent

text: HUN-REN BRC

characteristic: collection date

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: Acinetobacter phage PhT2_v2

characteristic: description

text: Hungary

text: not provided

characteristic: geographic location (region and locality)

characteristic: host age

text: other

characteristic: host behaviour

text: Acinetobacter baumannii

characteristic: host common name

text: not provided

characteristic: host health state

text: Acinetobacter baumannii

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: not provided

text: not provided

characteristic: isolation source host-associated

text: not provided

characteristic: isolation source non-host-associated

text: Acinetobacter phage vB_AbaM_PhT2-v2

text: Acinetobacter phage vB_AbaM_PhT2-v2

text: not provided

characteristic: serotype (required for a seropositive sample)

text: Acinetobacter phage PhT2_v2

text: not provided

characteristic: virus identifier


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

characteristic: Insertion Sequences Transposons

text: Virulent 64

characteristic: Lifestyle

text: Present

characteristic: Lysogeny related genes

text: dsDNA

characteristic: Nucleic acid type

characteristic: Number of predicted tail depolymerases

characteristic: Predicted ORFs

characteristic: Predicted ORFs ncbi

text: Absent

characteristic: Resistance genes

characteristic: SRA accession

characteristic: Submitter Id

text: Absent

characteristic: Virulence genes

text: HUN-REN BRC

characteristic: collecting institution

text: not provided

text: Acinetobacter phage Porter

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: other

text: Acinetobacter baumannii

text: not provided

text: Acinetobacter baumannii

text: not provided

text: Aci 15

text: not provided

characteristic: isolate

text: not provided

text: not provided

text: Acinetobacter phage vB_AbaM_Porter

characteristic: organism

text: Acinetobacter phage vB_AbaM_Porter

text: not provided

text: Acinetobacter phage Porter

characteristic: title

text: not provided


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

text: Virulent 70

text: Absent

text: dsDNA

text: Absent

text: Absent

text: HUN-REN BRC

characteristic: collection date

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: Acinetobacter phage Silvergun

characteristic: description

text: Hungary

text: not provided

characteristic: geographic location (region and locality)

characteristic: host age

text: other

characteristic: host behaviour

text: Acinetobacter baumannii

characteristic: host common name

text: not provided

characteristic: host health state

text: Acinetobacter baumannii

characteristic: host scientific name

text: not provided

characteristic: host sex

text: Aci 108_AB198

characteristic: host subject id

text: not provided

text: not provided

characteristic: isolation source host-associated

text: not provided

characteristic: isolation source non-host-associated

text: Acinetobacter phage vB_AbaS_Silvergun

text: Acinetobacter phage vB_AbaS_Silvergun

text: not provided

characteristic: serotype (required for a seropositive sample)

text: Acinetobacter phage Silvergun

text: not provided

characteristic: virus identifier


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

characteristic: Insertion Sequences Transposons

text: Virulent 100

characteristic: Lifestyle

text: Absent

characteristic: Lysogeny related genes

text: dsDNA

characteristic: Nucleic acid type

characteristic: Number of predicted tail depolymerases

characteristic: Predicted ORFs

characteristic: Predicted ORFs ncbi

text: Absent

characteristic: Resistance genes

characteristic: SRA accession

characteristic: Submitter Id

text: Absent

characteristic: Virulence genes

text: HUN-REN BRC

characteristic: collecting institution

text: not provided

text: Acinetobacter phage Dino

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: other

text: Acinetobacter baumannii

text: not provided

text: Acinetobacter baumannii

text: not provided

text: Aci 101_AB93

text: not provided

characteristic: isolate

text: not provided

text: not provided

text: Acinetobacter phage vB_AbaP_Dino

characteristic: organism

text: Acinetobacter phage vB_AbaP_Dino

text: not provided

text: Acinetobacter phage Dino

characteristic: title

text: not provided


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

text: Virulent 100

text: Absent

text: dsDNA

text: Absent

text: Absent

text: HUN-REN BRC

characteristic: collection date

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: Acinetobacter phage Fishpie

characteristic: description

text: Hungary

text: not provided

characteristic: geographic location (region and locality)

characteristic: host age

text: other

characteristic: host behaviour

text: Acinetobacter baumannii

characteristic: host common name

text: not provided

characteristic: host health state

text: Acinetobacter baumannii

characteristic: host scientific name

text: not provided

characteristic: host sex

text: Aci 7

characteristic: host subject id

text: not provided

text: not provided

characteristic: isolation source host-associated

text: not provided

characteristic: isolation source non-host-associated

text: Acinetobacter phage vB_AbaP_Fishpie

text: Acinetobacter phage vB_AbaP_Fishpie

text: not provided

characteristic: serotype (required for a seropositive sample)

text: Acinetobacter phage Fishpie

text: not provided

characteristic: virus identifier


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

characteristic: Insertion Sequences Transposons

text: Virulent 99

characteristic: Lifestyle

text: Absent

characteristic: Lysogeny related genes

text: dsDNA

characteristic: Nucleic acid type

characteristic: Number of predicted tail depolymerases

characteristic: Predicted ORFs

characteristic: Predicted ORFs ncbi

text: Absent

characteristic: Resistance genes

characteristic: SRA accession

characteristic: Submitter Id

text: Absent

characteristic: Virulence genes

text: HUN-REN BRC

characteristic: collecting institution

text: not provided

text: Acinetobacter phage ABW311

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: other

text: Acinetobacter baumannii

text: not provided

text: Acinetobacter baumannii

text: not provided

text: Aci 311

text: not provided

characteristic: isolate

text: not provided

text: not provided

text: Acinetobacter phage vB_AbaP_ABW311

characteristic: organism

text: Acinetobacter phage vB_AbaP_ABW311

text: not provided

text: Acinetobacter phage ABW311

characteristic: title

text: not provided


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

text: Virulent 99

text: Absent

text: dsDNA

text: Absent

text: Absent

text: HUN-REN BRC

characteristic: collection date

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: Acinetobacter phage ABW132

characteristic: description

text: Hungary

text: not provided

characteristic: geographic location (region and locality)

characteristic: host age

text: other

characteristic: host behaviour

text: Acinetobacter baumannii

characteristic: host common name

text: not provided

characteristic: host health state

text: Acinetobacter baumannii

characteristic: host scientific name

text: not provided

characteristic: host sex

text: Aci 132_Belgrade15

characteristic: host subject id

text: not provided

text: not provided

characteristic: isolation source host-associated

text: not provided

characteristic: isolation source non-host-associated

text: Acinetobacter phage vB_AbaP_ABW132

text: Acinetobacter phage vB_AbaP_ABW132

text: not provided

characteristic: serotype (required for a seropositive sample)

text: Acinetobacter phage ABW132

text: not provided

characteristic: virus identifier


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

characteristic: Insertion Sequences Transposons

text: Virulent 99

characteristic: Lifestyle

text: Absent

characteristic: Lysogeny related genes

text: dsDNA

characteristic: Nucleic acid type

characteristic: Number of predicted tail depolymerases

characteristic: Predicted ORFs

characteristic: Predicted ORFs ncbi

text: Absent

characteristic: Resistance genes

characteristic: SRA accession

characteristic: Submitter Id

text: Absent

characteristic: Virulence genes

text: HUN-REN BRC

characteristic: collecting institution

text: not provided

text: Acinetobacter phage vB_AbaP_Margaret

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: other

text: Acinetobacter baumannii

text: not provided

text: Acinetobacter baumannii

text: not provided

text: Aci 7

text: not provided

characteristic: isolate

text: not provided

text: not provided

text: Acinetobacter phage vB_AbaP_Margaret

characteristic: organism

text: Acinetobacter phage vB_AbaP_Margaret

text: not provided

text: Acinetobacter phage Margaret

characteristic: title

text: not provided


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

text: Virulent 99

text: Absent

text: dsDNA

text: Absent

text: Absent

text: HUN-REN BRC

characteristic: collection date

characteristic: collector name

text: not provided

characteristic: definition for seropositive sample

text: Acinetobacter phage Tama

characteristic: description

text: Hungary

text: not provided

characteristic: geographic location (region and locality)

characteristic: host age

text: other

characteristic: host behaviour

text: Acinetobacter baumannii

characteristic: host common name

text: not provided

characteristic: host health state

text: Acinetobacter baumannii

characteristic: host scientific name

text: not provided

characteristic: host sex

characteristic: host subject id

text: not provided

text: not provided

characteristic: isolation source host-associated

text: not provided

characteristic: isolation source non-host-associated

text: Acinetobacter phage vB_AbaP_Tama

text: Acinetobacter phage vB_AbaP_Tama

text: not provided

characteristic: serotype (required for a seropositive sample)

text: Acinetobacter phage Tama

text: not provided

characteristic: virus identifier


characteristic: CheckV score

characteristic: ENA-CHECKLIST

text: Present

characteristic: Endonucleases

characteristic: GC

characteristic: Genome size

text: HUN-REN BRC

characteristic: INSDC center name

text: Absent

characteristic: Insertion Sequences Transposons

text: Virulent 89

characteristic: Lifestyle

text: Absent

characteristic: Lysogeny related genes

text: dsDNA

characteristic: Nucleic acid type

characteristic: Number of predicted tail depolymerases

characteristic: Predicted ORFs

characteristic: Predicted ORFs ncbi

text: Absent

characteristic: Resistance genes

characteristic: SRA accession

characteristic: Submitter Id

text: Absent

characteristic: Virulence genes

text: HUN-REN BRC

characteristic: collecting institution

text: not provided

text: Acinetobacter phage Rocket

text: Hungary

characteristic: geographic location (country and/or sea)

text: not provided

text: other

text: Acinetobacter baumannii

text: not provided

text: Acinetobacter baumannii

text: not provided

text: not provided

characteristic: isolate

text: not provided

text: not provided

text: Acinetobacter phage vB_AbaM_Rocket

characteristic: organism

text: Acinetobacter phage vB_AbaM_Rocket

text: not provided

text: Acinetobacter phage Rocket

characteristic: title

text: not provided


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: IRD-MIVEGEC

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: collection date

text: human

characteristic: common name

text: Spatial transcriptomics data of sample A

characteristic: description

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample B

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample C

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample D

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample E

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample F

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample G

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample H

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample I

text: Benin

text: Homo sapiens

text: Homo sapiens


text: IRD-MIVEGEC

text: public

text: human

text: Spatial transcriptomics data of sample J

text: Benin

text: Homo sapiens

text: Homo sapiens


DCL CMV RNA 2 r1

text: Martin Luther University Halle-Wittenberg

text: public

text: DCL CMV RNA 2 r1

text: missing: lab stock

text: common tobacco

text: double-stranded RNA 2 of Cucumber mosaic virus (CMV) was processed into siRNAs by DCLs present in cytoplasmic extract (BYL) of N. tabacum BY-2 protoplasts, total RNA was isolated, small RNA libraries were prepared and sequenced

text: missing: lab stock

text: Nicotiana tabacum

text: Nicotiana tabacum

text: small RNA-seq of siRNAs derived from CMV RNA 2, replicate 1


text: University Hospital of North Norway

text: public

text: Bacterial culture

text: Norway

text: Klebsiella michiganensis

text: Klebsiella michiganensis


text: University Hospital of North Norway

text: public

text: Bacterial culture

text: Norway

text: Klebsiella oxytoca

text: Klebsiella oxytoca


text: NIPH

text: public

text: ELIXIR-Norway

characteristic: broker name

text: N. meningitidis

text: Norway

text: not provided

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: Blood

text: Neisseria meningitidis

text: Neisseria meningitidis


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Hospital Universitario Virgen del Rocio, Sevilla, Spain

text: not provided

characteristic: collector name

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolation source host-associated

text: active surveillance in response to outbreak

characteristic: sample capture status

characteristic: sample storage conditions

text: AND39999, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

text: AND40000, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

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characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

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characteristic: host health state

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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characteristic: isolate

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characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

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characteristic: host health state

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

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characteristic: geographic location (country and/or sea)

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characteristic: isolate

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characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (latitude)

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

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text: ena-upload-cli

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characteristic: collecting institution

characteristic: collection date

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characteristic: geographic location (country and/or sea)

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characteristic: isolate

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characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

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characteristic: host health state

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

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text: not provided

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

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characteristic: isolate

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characteristic: title


text: Clinical Bioinformatics Area

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characteristic: SRA accession

text: ena-upload-cli

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text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

characteristic: collecting institution

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characteristic: geographic location (country and/or sea)

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characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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text: Servicio de Microbiologia, Hospital Universitario San Cecilio, Granada, Spain

text: not provided

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text: Spain

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

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text: Clinical Bioinformatics Area

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text: ena-upload-cli

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characteristic: title


text: Clinical Bioinformatics Area

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text: ena-upload-cli

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text: not provided

characteristic: collector name

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text: Spain

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characteristic: ENA first public

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text: public

text: ena-upload-cli

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text: Human

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

characteristic: collecting institution

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characteristic: isolate

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text: AND40024, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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text: not provided

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text: ena-upload-cli

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

characteristic: collecting institution

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text: Human

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text: Homo Sapiens

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characteristic: isolate

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text: AND40027, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

characteristic: collector name

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

characteristic: description

text: Spain

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

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text: ena-upload-cli

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characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

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text: Spain

characteristic: geographic location (latitude)

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

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text: not provided

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

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text: ena-upload-cli

characteristic: collecting institution

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characteristic: geographic location (country and/or sea)

text: Human

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text: Homo Sapiens

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characteristic: isolate

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text: AND40033, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

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text: not provided

characteristic: host health state

text: Homo Sapiens

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

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text: Spain

text: Human

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text: not provided

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text: AND40035, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

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text: ena-upload-cli

characteristic: collecting institution

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text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

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text: not provided

characteristic: isolate

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text: AND40036, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (latitude)

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text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

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text: not provided

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

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text: not provided

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text: not provided

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text: AND40038, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

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text: not provided

characteristic: isolate

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text: AND40039, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: Servicio de Microbiologia, Complejo Hospitalario Torrecardenas, Almeria, Spain

text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

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text: not provided

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

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text: not provided

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text: not provided

characteristic: isolation source host-associated

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text: AND40041, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

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characteristic: isolate

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text: AND40042, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (latitude)

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text: Human

text: not provided

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text: not provided

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

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text: Spain

text: Human

characteristic: host common name

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text: not provided

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text: not provided

characteristic: isolation source host-associated

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text: AND40044, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

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text: not provided

characteristic: isolate

characteristic: organism

text: AND40045, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

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text: AND40046, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

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text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolation source host-associated

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text: AND40047, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

text: AND40048, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: not provided

text: not provided

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text: AND40049, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

text: Spain

text: Human

characteristic: host common name

text: not provided

text: Homo Sapiens

text: not provided

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

characteristic: isolation source host-associated

characteristic: sample capture status

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text: AND40050, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: not provided

text: not provided

text: not provided

characteristic: isolate

characteristic: organism

text: AND40051, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

characteristic: Submitter Id

text: not provided

characteristic: collector name

characteristic: description

text: Spain

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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characteristic: collecting institution

characteristic: collection date

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characteristic: geographic location (country and/or sea)

text: Human

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text: Homo Sapiens

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characteristic: title


text: Clinical Bioinformatics Area

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characteristic: SRA accession

text: ena-upload-cli

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text: not provided

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text: Spain

characteristic: geographic location (latitude)

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characteristic: host health state

text: Homo Sapiens

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

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text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

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text: Clinical Bioinformatics Area

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characteristic: title


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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: collecting institution

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characteristic: geographic location (country and/or sea)

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characteristic: title


text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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characteristic: geographic location (latitude)

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

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text: Clinical Bioinformatics Area

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characteristic: INSDC status

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text: ena-upload-cli

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characteristic: title


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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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characteristic: SRA accession

text: ena-upload-cli

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characteristic: ENA first public

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text: ena-upload-cli

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characteristic: title


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characteristic: INSDC center name

text: public

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text: ena-upload-cli

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

characteristic: Submitter Id

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text: not provided

text: Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region. Sequencing supported by RELECOV consortium, funded by the European Centre for Diseases Prevention and Control (ECDC) under Grant Agreement ECDC/HERA/2021/024 ECDC.12241

text: Spain

characteristic: geographic location (country and/or sea)

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characteristic: ENA first public

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characteristic: Submitter Id

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characteristic: title


text: Clinical Bioinformatics Area

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text: ena-upload-cli

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

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text: ena-upload-cli

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text: Human

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characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

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characteristic: INSDC center name

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text: ena-upload-cli

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: Submitter Id

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text: not provided

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text: Human

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characteristic: isolate

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characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

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text: ena-upload-cli

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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characteristic: host common name

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: Submitter Id

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text: not provided

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text: Human

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characteristic: title


characteristic: ENA first public

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text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

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characteristic: collector name

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text: Human

text: not provided

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text: Homo Sapiens

characteristic: host scientific name

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

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text: Spain

text: Human

characteristic: host common name

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

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text: Homo Sapiens

text: female

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characteristic: isolate

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text: active surveillance in response to outbreak

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characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

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text: ena-upload-cli

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text: Spain

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text: Human

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text: Homo Sapiens

characteristic: host scientific name

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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characteristic: host common name

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text: Homo Sapiens

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text: not provided

characteristic: host subject id

text: not provided

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: Submitter Id

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text: not provided

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characteristic: geographic location (country and/or sea)

text: Human

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text: Homo Sapiens

text: female

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characteristic: isolate

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text: AND40087, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA first public

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text: Clinical Bioinformatics Area

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characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

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text: Human

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text: Homo Sapiens

characteristic: host scientific name

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text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

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text: ena-upload-cli

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characteristic: host common name

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characteristic: ENA first public

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text: Clinical Bioinformatics Area

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text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

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characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: male

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characteristic: isolate

text: Nasopharynx swab

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text: AND40090, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

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text: ena-upload-cli

text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

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characteristic: host age

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: male

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characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

characteristic: SRA accession

text: ena-upload-cli

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characteristic: host common name

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text: Homo Sapiens

text: female

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text: not provided

characteristic: host subject id

text: not provided

text: Nasopharynx swab

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text: AND40092, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: male

text: not provided

text: not provided

characteristic: isolate

text: Nasopharynx swab

characteristic: organism

text: AND40093, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

text: not provided

characteristic: collector name

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text: Spain

characteristic: geographic location (latitude)

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characteristic: host age

text: Human

text: not provided

characteristic: host health state

text: Homo Sapiens

characteristic: host scientific name

text: female

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text: Nasopharynx swab

text: AND40094, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


text: Clinical Bioinformatics Area

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: ena-upload-cli

text: not provided

text: Spain

text: Human

characteristic: host common name

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text: Homo Sapiens

text: male

characteristic: host sex

text: not provided

characteristic: host subject id

text: not provided

text: Nasopharynx swab

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text: AND40095, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Clinical Bioinformatics Area

text: public

text: ena-upload-cli

characteristic: Submitter Id

characteristic: collecting institution

characteristic: collection date

text: not provided

text: Spain

characteristic: geographic location (country and/or sea)

text: Human

text: not provided

text: Homo Sapiens

text: female

text: not provided

text: not provided

characteristic: isolate

text: Nasopharynx swab

characteristic: organism

text: AND40096, Severe acute respiratory syndrome coronavirus 2, WGS, Andalusia Region

characteristic: title


text: Anthony Smith, NICD

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: EnteroBase

characteristic: broker name

text: EnteroBase

text: A. Smith, National Institute for Communicable Diseases

text: Whole genome sequencing data uploaded by EnteroBase user

characteristic: description

text: South Africa

text: Gauteng

characteristic: geographic location (region and locality)

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis

characteristic: serovar

characteristic: strain


text: Anthony Smith, NICD

text: public

characteristic: SRA accession

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


characteristic: ENA first public

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: KwaZulu-Natal

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


characteristic: ENA-CHECKLIST

text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: sub species Salamae


text: Anthony Smith, NICD

text: public

characteristic: Submitter Id

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Umbilo


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Infantis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Blood culture

text: Salmonella enterica

text: Salmonella enterica

text: Enteritidis


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Eastern Cape

text: Human, Stool

text: Salmonella enterica

text: Salmonella enterica

text: Typhimurium


text: Anthony Smith, NICD

text: public

text: EnteroBase

text: EnteroBase

text: South Africa

text: Gauteng

text: Human, Urine

text: Salmonella enterica

text: Salmonella enterica

text: Paratyphi C


text: HUG

text: public

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

characteristic: collecting institution

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

characteristic: collector name

text: Switzerland

text: GE

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/GE-HUG-44805599/2024

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance not initiated by an outbreak

characteristic: sample capture status


text: HUG

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: SG

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/SG-SNRCI-HUG-44615461/2024

characteristic: isolate

characteristic: organism

text: other

characteristic: title


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: HUG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Switzerland

text: TI

characteristic: geographic location (region and locality)

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-SNRCI-HUG-44625599/2024

text: other


text: Institute of Medical Virology, Zürich, Switzerland

text: public

text: SIB

text: Universität Zürich, Zürich, Switzerland

characteristic: collecting institution

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Annette Audigé, Guido Bloemberg, Michael Huber, Alexandra Trkola

characteristic: collector name

text: Switzerland

text: ZH

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6db56/2024


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

text: Universität Zürich, Zürich, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-4846f06f/2024

characteristic: sample capture status


text: public

text: SIB

characteristic: broker name

text: Universität Zürich, Zürich, Switzerland

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-485b26d6/2024

characteristic: isolate

characteristic: organism


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Universitäts-Kinderspital Zürich, Zürich, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6db6f/2024

characteristic: title


text: public

text: SIB

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

characteristic: host health state

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6dc8f/2024


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

text: Universität Zürich, Zürich, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/ZH-UZH-IMV-485cc4b7/2024


text: HUG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: TI

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/TI-SNRCI-HUG-44644988/2024

characteristic: isolate

text: other

characteristic: sample capture status


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: HUG

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Laboratoire de virologie, Geneva, Switzerland

text: Switzerland

text: GE

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/GE-HUG-44468194/2024

characteristic: organism


text: HUG

text: public

text: SIB

characteristic: collecting institution

text: Samuel Cordey, Aline Mamin, Francisco Perez, Ana Rita Goncalves, Laurent Kaiser, Lorenzo Cerutti, Cedric Howald, Henri Pegeot, Melyssa Elies, Deborah Penet, Keith Harshman, Ioannis Xenarios

characteristic: collector name

text: Switzerland

text: VD

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/VD-HUG-44708560/2024

characteristic: title


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

text: Universität Zürich, Zürich, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

characteristic: host sex

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-485bb547/2024

text: Severe acute respiratory syndrome coronavirus 2

text: active surveillance not initiated by an outbreak


text: HUG

text: public

text: SIB

characteristic: broker name

characteristic: collection date

text: Switzerland

characteristic: geographic location (country and/or sea)

text: VD

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

characteristic: host subject id

text: hCoV-19/Switzerland/VD-HUG-44765729/2024

characteristic: isolate


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Institute of Medical Virology, Zürich, Switzerland

text: public

characteristic: SRA accession

characteristic: Submitter Id

text: SIB

text: Universität Zürich, Zürich, Switzerland

text: Verena Kufner, Maryam Zaheri, Stefan Schmutz, Kevin Steiner, Annette Audigé, Guido Bloemberg, Michael Huber, Alexandra Trkola

text: Switzerland

text: ZH

text: Human

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-4860096a/2024

characteristic: sample capture status


text: public

text: SIB

text: Universität Zürich, Zürich, Switzerland

characteristic: collecting institution

characteristic: collector name

text: Switzerland

text: ZH

characteristic: geographic location (region and locality)

text: Human

characteristic: host common name

text: restricted access

text: Homo sapiens

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6dcdb/2024

characteristic: organism


characteristic: INSDC center name

text: public

characteristic: INSDC status

text: SIB

text: Universität Zürich, Zürich, Switzerland

text: Switzerland

text: ZH

text: Human

text: restricted access

characteristic: host health state

text: Homo sapiens

characteristic: host scientific name

text: restricted access

text: restricted access

text: hCoV-19/Switzerland/ZH-UZH-IMV-3ba6d842/2024

characteristic: title


characteristic: External Id

text: taizhou hospital

characteristic: INSDC last update

text: public

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8027

tag: Namespace:taizhou hospital

text: human

characteristic: common name

text: Bacteria, viruses, fungi

characteristic: description

text: Homo sapiens

text: Homo sapiens


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: taizhou hospital

text: public

characteristic: SRA accession

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8028

text: human

text: Bacteria, viruses, fungi

text: Homo sapiens

text: Homo sapiens


text: taizhou hospital

text: public

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8029

characteristic: Submitter Id

text: human

text: Bacteria, viruses, fungi

text: Homo sapiens

text: Homo sapiens


text: taizhou hospital

text: public

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8030

text: human

text: Bacteria, viruses, fungi

text: Homo sapiens

text: Homo sapiens


text: taizhou hospital

text: public

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8031

text: human

text: Bacteria, viruses, fungi

text: Homo sapiens

text: Homo sapiens


text: taizhou hospital

text: public

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8032

text: human

text: Bacteria, viruses, fungi

text: Homo sapiens

text: Homo sapiens


text: taizhou hospital

text: public

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8033

text: human

text: Bacteria, viruses, fungi

text: Homo sapiens

text: Homo sapiens


text: taizhou hospital

text: public

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8034

text: human

text: Bacteria, viruses, fungi

text: Homo sapiens

text: Homo sapiens


text: taizhou hospital

text: public

text: ena-SAMPLE-TAB-03-06-2022-15:07:30:187-8035

text: human

text: Bacteria, viruses, fungi

text: Homo sapiens

text: Homo sapiens