E-MTAB-14179:sAD 10 Cbl

text: public

text: E-MTAB-14179:sAD 10 Cbl

text: ArrayExpress

text: not collected

text: human

text: adult

text: Alzheimer's disease

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: cerebellum

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: sAD 10 Cbl


E-MTAB-14179:sAD 10 Ctx

status: PUBLIC

characteristic: ENA first public

tag: attribute

characteristic: ENA-CHECKLIST

text: The University of Southern California Leonard Davis School of Gerontology

characteristic: INSDC center name

text: public

characteristic: INSDC status

characteristic: SRA accession

text: E-MTAB-14179:sAD 10 Ctx

characteristic: Submitter Id

unit: year

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

characteristic: collection date

text: human

characteristic: common name

text: Protocols: Tissues were received from NIH brain banks from postmortem individuals. Diagnoses were assigned by a pathologist.  20mg of brain tissue was homogenized in TRIzol reagent using a BeadBug Benchtop Homogenizer. Brain tissue was suspended in 1 mL of TRIzol and homogenized for 6 rounds of 10 s homogenization and 60 s holds between each round. 300 µL of chloroform was added to the sample and aqueous separation of RNA was performed using centrifugation in a heavy gel phase-lock tube (VWR, 10847-802). The aqueous phase was applied to a standard column-based RNA purification kit (Quantabio, Extracta Plus, Cat# 95214-050) following the manufacturer’s protocol.  Preparation of libraries for sequencing was handled by Novogene.

characteristic: description

text: adult

characteristic: developmental stage

text: Alzheimer's disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prefrontal cortex

text: Homo sapiens

text: male

text: sAD 10 Ctx

characteristic: title


E-MTAB-14179:sAD 11 Ctx

text: public

text: E-MTAB-14179:sAD 11 Ctx

text: ArrayExpress

text: not collected

text: human

text: adult

text: Alzheimer's disease

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: prefrontal cortex

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: sAD 11 Ctx


E-MTAB-14179:sAD 13 Cbl

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-14179:sAD 13 Cbl

text: ArrayExpress

text: not collected

text: human

text: adult

text: Alzheimer's disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: cerebellum

text: Homo sapiens

text: female

text: sAD 13 Cbl


E-MTAB-14179:sAD 13 Ctx

text: public

characteristic: SRA accession

text: E-MTAB-14179:sAD 13 Ctx

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: adult

text: Alzheimer's disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: prefrontal cortex

text: Homo sapiens

text: female

text: sAD 13 Ctx


E-MTAB-14179:sAD 14 Cbl

text: public

text: E-MTAB-14179:sAD 14 Cbl

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Alzheimer's disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: cerebellum

text: Homo sapiens

text: female

text: sAD 14 Cbl


E-MTAB-14179:sAD 14 Ctx

text: public

text: E-MTAB-14179:sAD 14 Ctx

text: ArrayExpress

text: not collected

text: human

text: adult

text: Alzheimer's disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: prefrontal cortex

text: Homo sapiens

text: female

text: sAD 14 Ctx

characteristic: title


E-MTAB-14179:sAD 15 Cbl

text: public

text: E-MTAB-14179:sAD 15 Cbl

text: ArrayExpress

text: not collected

text: human

text: adult

text: Alzheimer's disease

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: cerebellum

characteristic: organism part

text: Homo sapiens

text: female

characteristic: sex

text: sAD 15 Cbl


E-MTAB-14179:sAD 15 Ctx

characteristic: ENA first public

characteristic: ENA-CHECKLIST

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: E-MTAB-14179:sAD 15 Ctx

text: ArrayExpress

text: not collected

text: human

text: adult

text: Alzheimer's disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: prefrontal cortex

text: Homo sapiens

text: female

text: sAD 15 Ctx


E-MTAB-14179:sAD 16 Cbl

text: public

characteristic: SRA accession

text: E-MTAB-14179:sAD 16 Cbl

characteristic: Submitter Id

characteristic: age

text: ArrayExpress

characteristic: broker name

text: not collected

text: human

text: adult

text: Alzheimer's disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: cerebellum

text: Homo sapiens

text: female

text: sAD 16 Cbl


E-MTAB-14179:sAD 16 Ctx

text: public

text: E-MTAB-14179:sAD 16 Ctx

text: ArrayExpress

text: not collected

characteristic: collection date

text: human

characteristic: common name

characteristic: description

text: adult

characteristic: developmental stage

text: Alzheimer's disease

text: not collected

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: prefrontal cortex

text: Homo sapiens

text: female

text: sAD 16 Ctx


E-MTAB-14179:sAD 9 Cbl

text: public

text: E-MTAB-14179:sAD 9 Cbl

text: ArrayExpress

text: not collected

text: human

text: adult

text: Alzheimer's disease

text: not collected

characteristic: geographic location (country and/or sea)

text: not applicable

characteristic: isolate

text: Homo sapiens

characteristic: organism

text: Homo sapiens

text: cerebellum

text: Homo sapiens

text: male

text: sAD 9 Cbl

characteristic: title


E-MTAB-14179:sAD 9 Ctx

text: public

text: E-MTAB-14179:sAD 9 Ctx

text: ArrayExpress

text: not collected

text: human

text: adult

text: Alzheimer's disease

characteristic: disease

text: not collected

characteristic: individual

text: not applicable

text: Homo sapiens

text: Homo sapiens

text: prefrontal cortex

characteristic: organism part

text: Homo sapiens

text: male

characteristic: sex

text: sAD 9 Ctx


characteristic: ENA first public

characteristic: ENA-CHECKLIST

text: Leibniz Institute for the Analysis of Biodiversity Change

characteristic: INSDC center name

text: public

characteristic: INSDC status

text: ena-SAMPLE-TAB-18-06-2024-11:38:38:499-41434

characteristic: broad-scale environmental context

unit: m

characteristic: depth

text: EDNA metabarcoding from ponds

characteristic: environmental medium

text: Germany

unit: DD

characteristic: geographic location (latitude)

characteristic: geographic location (longitude)

characteristic: local environmental context

text: pond metagenome

text: eDNA metabarcoding vs. transect walks

characteristic: project name

text: pond metagenome

characteristic: target gene


text: public

characteristic: SRA accession

characteristic: Submitter Id

characteristic: collection date

text: EDNA metabarcoding from ponds

characteristic: description

text: Germany

characteristic: geographic location (country and/or sea)

text: pond metagenome

characteristic: organism

text: eDNA metabarcoding vs. transect walks

text: pond metagenome

characteristic: title