title: Nimblegen Dana expression custom array/2005-06-03_D_ananassae_50mer
status: Public on Nov 08 2007
contact.city: Bethesda
contact.first: Brian
contact.last: Oliver
contact.email: briano@nih.gov
contact.state: MD
contact.address: 50 South Drive
contact.department: LBG
contact.country: USA
contact.institute: NIDDK, NIH
contact.phone: 301-204-9463
organism: Drosophila ananassae
description: Nimblegen custom design array for Drosophila species expression: An average of 10 array element probes per predicted genes was selected without-bias vis-a-vis position within the gene model. Sources of gene predictions include EIS (Annotations from Eisen lab v.1.0, Feb. 2005), GID (ab-initio GeneID predictions on draft assembly), and GBK (EST sequence from GeneBank). Probes have been remapped to final genome assemblies (Comparative Assembly Freeze 1 CAF1, http://rana.lbl.gov/drosophila/caf1.html) and  genome annotation (GLEANR set, http://rana.lbl.gov/~venky/AAA/freeze_20061030/protein_coding_gene/GLEANR/annotation). Arrays are described in detail on http://intramural.niddk.nih.gov/research/multifly/multifly.htm.
manufacture_protocol: Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html