title: NimbleGen Custom Mouse Hox Tiling Array
status: Public on Apr 11 2012
contact.city: London
contact.first: Pradeepa
contact.middle: M
contact.last: Madapura
contact.email: p.m.madapura@qmul.ac.uk, manthankumar.patel@qmul.ac.uk
contact.state: UK
contact.address: 4 Newark Street, Whitechapel
contact.country: United Kingdom
contact.institute: Queen Mary University of London
organism: Mus musculus
description: Custom NimbleGen tiling microarrays were designed using http://genome.ucsc.edu/MM9 NCBI37. Co ordinates of Mouse Hox A, B, C and D clusters, and several other genes were included in the design.  For genes other than Hox clusters, we have included 2 KB upstream TSS and 2KB downstream TES. We have chosen probes that may match up to 10 places in the genome as necessary to fill gaps in coverage; average probe spacing is 46 bases; four copies of each probe to be placed on the array. For details about designing and manufacture http://www.nimblegen.com/
manufacture_protocol: Nimblegen manufacture protocol