title: Agilent-031243 Clostridium perfringens pangenome
status: Public on Dec 31 2014
contact.city: Wageningen
contact.first: Yinghua
contact.last: Xiao
contact.email: yinghua.xiao@wur.nl
contact.address: Bornse Weilanden 9
contact.country: Netherlands
contact.institute: Wageningen University
organism: Clostridium perfringens
description: TIFN C1056 project. Contains probes for ATCC13124, SM101, strain 13; incomplete: ATCC3626, F4969, JGS1495, JGS1721, JGS1987, NCTC8239; plasmids: pBCNF5603, pCP13, pCP8533etx, pCPF4969, pCPF5603, pCW3, pSM101A, pSM101B
  
  Arrays of this design have barcodes that begin with 16031243 or 2531243.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Feature Extraction feature number.
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
  The scan files were dissected into the 4 slide regions  which generates a data file for each hybridization
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/