title: Agilent-049690 Krill 2.0 [Probe Name]
status: Public on Dec 31 2017
contact.city: Padova
contact.first: Cristiano
contact.last: De Pitta
contact.email: cristiano.depitta@unipd.it
contact.address: Via U. Bassi, 58/B
contact.department: Biology
contact.country: Italy
contact.institute: University of Padova
contact.phone: +390498276210
organism: Euphausia superba
description: Euphausia superba microarray
  
  Arrays of this design have barcodes that begin with 16049690 or 2549690.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Probe Name
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
  
  "Nnnnn" accessions in the Platform represent the contig number of our krill 'master' transcriptome as described in Meyer et al (2015, PMID:25818178). One probe for each consensus sequence was designed to construct the custom high-density oligo DNA microarray platform. Probe design was carried out using the Agilent eArray Custom Microarray Design Service. Microarrays were synthesized in situ using the Agilent ink-jet technology with 8 x 60 K format. Microarray custom platform, named ?Krill 2.0? (eArray Design ID: 049690), showed 57,358 probes and 1,319 controls.
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/