title: 2004_02_03_Hogenhout_24mer
status: Public on May 21 2009
contact.city: Wooster
contact.first: Esther
contact.last: van der Knaap
contact.email: vanderknaap.1@osu.edu
contact.state: OH
contact.address: 1680 Madison Ave.
contact.department: Horticulture and crop science
contact.country: USA
contact.web_link: http://www.oardc.ohio-state.edu/vanderknaap/
contact.institute: The Ohio State University
contact.phone: 330 263 2821
organism: Solanum lycopersicum
description: 2004_02_03_Hogenhout platform was custom-designed oligoarray manufactured by Nimblegen (Nimblegen Systems Inc. http://www.nimblegen.com) based on TIGR (now Computational Biology and Functional Genomics Laboratory: http://compbio.dfci.harvard.edu/tgi/) tomato Tentative Contigs sequences (release 9). It consists of 15270 Tentaive Clsuters (TC) corresponding to 7600 different clusters (transcripts) and each TC was represented by 12 pairs of perfect and mismatch probes of 24-mers.
  The .ndf and .ngd files are linked below as supplementary files.
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.