title: Dmel.testis.1.0
status: Public on Oct 08 2000
contact.city: Bethesda
contact.first: Brian
contact.last: Oliver
contact.email: briano@nih.gov
contact.state: MD
contact.address: 50 South Drive
contact.department: LBG
contact.country: USA
contact.institute: NIDDK, NIH
contact.phone: 301-204-9463
organism: Drosophila melanogaster
description: The array was assembled using 1,681 testes ESTs, representing 1,527 Drosophila melanogaster EST sequences and 144 anonymous clones from the bs collection (CLONE_ID).
  An aliquot of the same DNA preparation used in the sequencing reactions (GB_ACC), diluted 2/50 in TE, provided material for the PCRs.
  Inserts were PCR amplified (1X PCR buffer [Life Technologies], 1.5 mM MgCl2, 0.2 mM dNTPs, 1 µM T7 22-mer primer, 1 µM T3 20-mer primer, 2 µl of plasmid DNA dilution [approximately 10 ng], 0.035 U/µl recombinant Taq DNA polymerase [Life Technologies], in a volume of 100 µl, cycled 94C 2 min, 30X[94 C 0.5 min, 55 C 0.5 min, 2.5 min 72 C], 10 min 72 C in a PTC-225 DNA Engine Tetrad [MJ Research]), and successful amplification was confirmed by agarose gel electrophoresis (PCR-QC:  passed = product present, failed = no product).
  Samples of approximately 5 nl of 250 µg/ml DNA, in 0.1 N NaOH were printed in 300 µm spots in subarrays (SUB-ARRAY) of 12 x 12 clones (ROW and COLUMN indicated) at 665 µm spacing on Supercharge nytran membranes (Schleicher & Schuell) using a GMS 417 arrayer (Genetic Microsystems).
  Subarrays were printed in duplicate (DUPLICATE a or b).
  Printing was validated (SPOT_QC) by hybridization of one array with the short vector sequence common to all amplicons (pBluescript SK, 626-791 bp).
  SPOT_QC values are hybridization intensity.  BEST-HIT and associated E value for ESTs aligned with the nr database are given.
  Keywords = germline sex testis, membrane, filter