title: Agilent-031125 Desulfitobacterium hafniense oligonucleotide microarray 8x60k
status: Public on Nov 21 2017
contact.city: Wageningen
contact.first: Ye
contact.last: Tian
contact.email: ye.tian@wur.nl
contact.address: Stippeneng 4
contact.department: AFSG
contact.country: Netherlands
contact.institute: Wageningen University
contact.phone: +31317480046
organism: Desulfitobacterium hafniense
description: A custom-designed based on the complete genome sequences of D. hafniense DCB-2 and Y51 (NCBI Genbank accession numbers NC_007907 and NC_011830, respectively). The array contains 21905 distinct 45 to-60 oligonucleotides designed with PICKY (Chou et al., 2004; Chou et al., 2009), including two or three probes per target transcript, as well as sense and antisense probes targeting intergenic regions that were larger than 60 oligonucleotides. In total, 11652 probes targeting genes and intergenic regions shared by both genomes. Probes were printed in duplicate on the Agilent 8 x 60 K custom gene expression microarray platform, containing in addition 1319 Agilent control probes.
manufacture_protocol: Array was designed by using Agilent eArray software. Custom gene expression arrays were generated by Agilent Technologies in 8X60K format. See manufacturer's web site at http://www.agilent.com/.