title: Arabidopsis thaliana SNP-tiling array AtSNPtile ver. 2
status: Public on Sep 01 2010
contact.city: Chicago
contact.first: Justin
contact.last: Borevitz
contact.email: borevitz@uchicago.edu
contact.state: IL
contact.address: 1101 E.57th St.
contact.department: Ecology and Evolution
contact.country: USA
contact.web_link: http://naturalsystems.org/lab
contact.institute: University of Chicago
contact.phone: (773)702-5948
organism: Arabidopsis thaliana
description: This array contains both SNP probes and tiling probes. SNP probes interrogate ~250K SNPs obtained from resequencing of 20 diverse A. thaliana strains (Clark et al. 2007). Each SNP is interrogated by the middle base of four 25mer probes, representing 2 alleles on 2 strands. Tiling probes interrogate ~1.5M unique sequences tiled along the A. thaliana genome with ~35 bp resolution. The reference genome for the array design is Columbia-0. The array is based on The Arabidopsis Information Resource (TAIR) genome release TAIR9.
manufacture_protocol: See manufacturer's web site.