title: Phytophthora ramorum 4x72K v1.0
status: Public on Mar 01 2012
contact.city: Davis
contact.first: Takao
contact.last: Kasuga
contact.state: CA
contact.address: 382 Huchison Hall
contact.country: USA
contact.institute: USDA-ARS
organism: Phytophthora ramorum
description: The IDs used correspond to the first 5 or 6 digits of the gene model # in the following link: http://vmd.vbi.vt.edu/download/data/prTranscript2.0Annot, which includes 15,743 gene models predicted by JGI and additional 419 models predicted by VBI.
  A few IDs of gene models have suffix M or RC as 97363M and 97571RC which corresponds to modified and reverse complement sequences of the original gene models, respectively.
manufacture_protocol: Roche NimbleGen’s proprietary Maskless Array Synthesis technology was to synthesize long oligo, high-density DNA microarrays.  Approximately four 60mer oligo probes were designed for each target on the array. Targets include 15,751 Phytophthora ramorum genome according to Gene models Phytophthora ramorum v1.0   (http://genome.jgi-psf.org/ramorum1/ramorum1.home.html).