title: Nimblegen custom human chromosome 1 high density 385K oligonucleotide array
status: Public on Jun 09 2009
contact.city: Seattle
contact.first: Barbara
contact.middle: J.
contact.last: Trask
contact.email: btrask@fhcrc.org
contact.state: WA
contact.address: 1100 Fairview Avenue N., C3-168, P.O. Box 19024
contact.department: Division of Human Biology
contact.country: USA
contact.web_link: http://labs.fhcrc.org/trask/
contact.institute: Fred Hutchinson Cancer Research Center
contact.phone: +1 206 667 1470
organism: Homo sapiens
description: A custom array of 385,001 isothermic oligomers representing the euchromatic portions of chromosome 1 was designed and fabricated by Nimblegen using the methods described previously (R.R. Selzer et al., Genes Chromosomes Cancer, 2005). The array was designed to maximize representation of HpaII fragments of size between 25 bp and 2500 bp. Of the 151,812 predicted HpaII fragments on chromosome 1 in that size range, 120,532 are represented on the array by at least one probe, and ~30% of these are represented by four probes.
  array map file 2006-01-12_HG17_DeBustos_HpaII.ndf
manufacture_protocol: As described in R.R. Selzer et al., Genes Chromosomes Cancer, 2005