title: Nimblegen T.reesei & T.virens Trichochip-1 393K v1.0
status: Public on Jun 01 2011
contact.city: Salamanca
contact.first: Enrique
contact.last: Monte
contact.email: emv@usal.es
contact.state: Salamanca
contact.address: Rio Duero
contact.department: Spanish-Portuguese Centre for Agricultural Research
contact.country: Spain
contact.institute: University of Salamanca
contact.phone: 34923294500 (5119)
organism: Trichoderma virens
  Trichoderma reesei
description: The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.
  SPOT_ID column:
  Annotations beginning with jgi stands for the annotation made by the Joint Genome Institute for these genomes. It has the following format: jgi | <genus and species abbreviation followed by release number> | <seq id number within this sequencing project> | <gene prediction or functional annotation>.
  ESTs begin with L (stands for Library) in the chip design; contigs consensus sequences begin with T (stands for Trichoderma).
manufacture_protocol: 090209_Tricho_FG_exp: The  microarray was composed of 374,824 60-mer probes designed against 14,081  EST-derived transcripts and the genomes of T. reesei (9,129 genes) and T.  virens (11,643 genes). Selected 11 probes per gene set on the final array.