title: Agilent custom 2 x 415K human CGH
status: Public on Mar 31 2011
contact.city: Houston
contact.first: Alexei
contact.last: Protopopov
contact.state: TX
contact.address: 1901 East Rd
contact.department: IACS
contact.country: USA
contact.institute: UT MD Anderson Cancer Center
organism: Homo sapiens
description: Belfer Institute for Applied Cancer Sciences
  Custom 2x415K array for human array-CGH
  Arrays of this design have barcodes that begin with 16023357 or 2523357.
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  Probe coordinates are based on genome build UCSC hg18
  The ID column represents the Agilent Feature Extraction feature number.
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/