title: NimbleGen P. falciparum 72K array [100712_Pfal_3D7_JM_exp_72K]
status: Public on Jul 06 2012
contact.city: Tampa
contact.first: JUN
contact.last: MIAO
contact.email: jmiao1@usf.edu
contact.state: Florida
contact.address: 3720 Spectrum Boulevard, MDC84
contact.department: Internal Medicine
contact.country: USA
contact.institute: University of South Florida
contact.phone: 8139747374
organism: Plasmodium falciparum 3D7
description: NimbleGen design name 100712_Pfal_3D7_exp, NimbleGen design ID 05327954001.  A 35809 45-60mer probes were selected with two replicates on final array for a total of 71618 probes. For transcripts between 1-299bp, 3 probes were selected per transcript. For transcripts between 300-3999bp, 6 probes were selected per transcript.  For transcripts >4000bp, 11 probes were selected per transcript.  No 3' bias was used during probe selection.  Tm weighting parameter (500) was used when selecting the final probes (Tm distribution between 60.90 and 77.80). It was design for 5367 genes from Plasmodium falciparum 3D7.
  The  probes were designed based on the NCBI genomic sequence (July 2010), and these genomic sequence accession numbers are NC_004314 -004318,  NC_004325-004331, NC_002375, NC_000910, NC_000521, X95276.
  The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.
  
  native array description file: 100712_Pfal_3D7_JM_exp.ndf
  native array description file: 100712_Pfal_3D7_JM_exp.ngd
  
  DesignID: 539063
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.