title: NimbleGen Mouse CGH 385K Array [090128_Montreal_JRL_CGH]
status: Public on Jul 01 2012
contact.city: Montreal
contact.first: Brian
contact.last: Wilhelm
contact.email: brian.wilhelm@umontreal.ca
contact.address: 2950 Chemin Polytechnique
contact.country: Canada
contact.institute: University of Montreal
organism: Mus musculus
description: Genome Build: NCBI37, MM9
  
  This array type was designed from mm9 and uses c57bl/6 mouse strain chr 6 sequence (~2Mbp) from chr6 and also uses ~700kb of sequence from the 129 mouse strain for the NKC region.
  
  The probes in the .ndf file are designated as _b6 or _129 depending on the origin of the sequence.
  
  The 60bp probes on the array overlap one another by 45bp (i.e. there are 15bp increments in the position of each probe).
  
  For the 129 sequence coordinates, they are derived from the following contigs in Genbank: AY686474, AY686475, AY686476, AY686477, AY686478, which were published as part of this paper: http://www.ncbi.nlm.nih.gov/pubmed/15674375
  The sequences of the assembled contig used are provided in the '129-Ly49_total.txt' file.
  
  Since all of the probes appear twice one the array (ie. replicated), unique identifiers were assigned by appending X (ROW) and Y (COL) coordinates on the .NDF file to each probe_ID.
  
  DesignID: 9080
  
  NimbleGen description files linked below:
  native array description file: 090128_Montreal_JRL_CGH.ndf
  native array description file: Andrew_corrected_posfile.pos
manufacture_protocol: See www.nimblegen.com