title: Arabidopsis thaliana AtSNPtile 1
status: Public on Jul 27 2011
contact.city: Münster
contact.first: Fei
contact.last: He
contact.email: fei.he@uni-muenster.de
contact.address: Hüfferstr. 1
contact.department: Münster University
contact.country: Germany
contact.institute: Institute for Evolution and Biodiversity
organism: Arabidopsis thaliana
description: This array contains both SNP probes and tiling probes. SNP probes interrogate ~250K SNPs obtained from resequencing of 20 diverse Arabidopsis thaliana strains (Clark et al. 2007). Each SNP is interrogated by the middle base of four 25mer probes, representing 2 alleles on 2 strands. Tiling probes interrogate ~1.5M unique sequences tiled along the Arabidopsis thaliana genome with ~35 bp resolution. The reference genome for the array design is Columbia-0. The array is based on The Arabidopsis Information Resource (TAIR) genome release TAIR9.
manufacture_protocol: see web site