title: Agilent-033621 Oryzon_Human_Expression_WGA_eArrayN6_2x105K_Control Grid IS-105072-2-V1_105K_GX_EQC_V20060608
status: Public on Aug 19 2018
contact.city: Cornella de Llobregat
contact.first: Tamara
contact.last: Maes
contact.state: Barcelona
contact.address: Carrer Sant Ferran 74
contact.department: R&D
contact.country: Spain
contact.institute: Oryzon Genomics S.A.
organism: Homo sapiens
description: Arrays of this design have barcodes that begin with 16033621 or 2533621.
  
  Please note that;
  [1] the AMAIDID number (014905) used for ordering corresponds to the agilent design ID (033621)
  [2] 033621_D_GEO_20110707.txt: the original Agilent design file in GEO format
  [3] AgilentOryzonCrossRef_033621.txt: the Agilent-Oryzon cross-reference file links the oligo on each spot to a corresponding ID
  [4] Oryzon_Human_Expression_WGA-geneIDTable_033621.txt: annotataio for each identifier
  
  The array is in a 2 x 105K human GE array format, each array has triplicate gene probes and a large number of replicate control probes of different kinds. Raw data are obtained by Agilent Feature extraction software but processing is done with proprietary in-house software. Each 105K array contains triplicates of each gene probe (sometimes several probes/genes); and approx. 2000-plicate of each Zea Mays control probe (used to perform spatial compensation, background assessment, variability assessment for outlier elimination). The calculations generate fold change files (only the human genes) from the raw data files. Further information on the array:
  Name: eArray-N6
  Design ID:033621
  Design Format: 2 X 105K
  Control Grid:IS-105072-2-V1_105K_GX_EQC_V20060608
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/