title: NimbleGen 12-plex Gene Expression Array for Cynomolgus monkey (135K) [120419_Cynomolgus_v5_TH_exp]
status: Public on Feb 24 2016
contact.city: Basel
contact.first: Tobias
contact.last: Heckel
contact.email: tobias-heckel@t-online.de
contact.address: Grenzacherstr. 124
contact.department: pRED
contact.country: Switzerland
contact.institute: Roche
organism: Macaca fascicularis
description: Cynomolgus monkey
  
  NimbleGen design name: 120419_Cynomolgus_v5_TH_exp
  The NimbleGen design is based on Cynomolgus genome/transcriptome version: v5 transcriptome. An expression design with 22,731 probe sets for 22,286 transcripts including transcript variants covering 18,943 genes with six 60-mer probes (PM) per probe set. The number of replicates is 1 - i.e., only one set of probes on the array. The design includes 348 probe sets for viral RNA transcripts, 3420 RANDOM_MK1 control probes for the estimation of the signal threshold, and 1536 ERCC probes for ERCC RNA Spike-In Control Mixes (Ambion/Life Technologies Catalog Numbers 4456740, 4456739).
  
  The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
  
  Native array description file: 120419_Cynomolgus_v5_TH_exp.ndf
  Native array description file: 120419_Cynomolgus_v5_TH_exp.ngd
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at: http://www.nimblegen.com/