title: UGAmamlab_Roseoarray_12k_v2
status: Public on Aug 05 2010
contact.city: Athens
contact.first: Shalabh
contact.last: Sharma
contact.email: ssharmai@uga.edu
contact.state: GA
contact.address: Department of Marine Science
contact.department: Marine Science
contact.country: USA
contact.institute: UGA
contact.phone: 706-542-0341
organism: Sulfitobacter sp. EE-36
  Roseovarius nubinhibens ISM
  Ruegeria pomeroyi DSS-3
  Pseudooceanicola batsensis HTCC2597
  Jannaschia sp. CCS1
  Ruegeria sp. TM1040
  Yoonia vestfoldensis SKA53
  Oceanicola granulosus HTCC2516
  Roseobacter sp. MED193
  Roseovarius sp. 217
  Sulfitobacter sp. NAS-14.1
  Sagittula stellata E-37
  Maritimibacter alkaliphilus
description: The microarray was designed based on selected Ruegeria pomeroyi DSS-3 genes and their orthologs in 12 other sequenced Roseobacter genomes. Probes were designed based on the DNA sequences of the orthologs using the Hierarchical Probe Design (HPD) algorithm. The array consists of 1,578 probes to 431 genes.
manufacture_protocol: See manufacturer website.