title: Agilent-061583 S_sala_calibration_array_1
status: Public on Jun 19 2015
contact.city: Ploen
contact.first: Till
contact.last: Czypionka
contact.address: August-Thienemann-Strasse 2
contact.department: Evolutionary Genetics
contact.country: Germany
contact.institute: MPI for Evolutionary Biology
organism: Salamandra salamandra
description: First S.salamandra array based on Illumina sequencing. For probe calibration and selection and for first body vs. tail comparison.
  
  Please note that annotation was performed by homology searches which yielded various GenBank IDs only for top BLAST hits (included in the supplementary file 'GEOplatform.supplement.txt'.
  
  Arrays of this design have barcodes that begin with 16061583 or 2561583.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Probe name
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/