title: LIMA_SlideB
status: Public on May 17 2005
contact.city: New Haven
contact.first: E. Janet
contact.last: Hager
contact.email: janet.hager@yale.edu
contact.state: CT
contact.address: 300 George Street, Suite 2110
contact.department: W.M. Keck Foundation Biotechnology Resource Laboratory
contact.country: USA
contact.web_link: http://info.med.yale.edu/wmkeck/dnaarrays/index.htm
contact.institute: Yale University School of Medicine
contact.phone: (203)785-7945
organism: Oryza sativa
description: Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other public resources. Mapping to TIGR rice genome pseudommolecues release 2 is based on the BLAST results, if a oligo has greater than 97% identity to a gene sequence from TIGR pseudomolecules, the oligo represents that gene. If the oligo matches to multiple genes, only one gene ID is randomly chosen. Preference is given to a 100% match. Rice 30K Operon Version 1.0 -70 mer oligos. The array is in 48 pin conformation. It has 25 columns and 25 rows in each of 4 x 12 subarrays. This is the slideB of the two slide sets.
  Platform_catalog_number: XDEN-A
  Platform_coating: poly L lysine
  Platform_manufacture_protocol: Omnigrid 100 contact printer; TeleChem Stealth SMP3 split pins; See http://keck.med.yale.edu/dnaarrays/printing
  Platform_manufacturer: Keck Biotechnology Resource Lab at Yale
  Platform_support: glass slide
  Platform_technology: spotted oligonucleotide