title: Agilent-046004 Homo sapiens PD genes dec12 array
status: Public on Feb 01 2016
contact.city: London
contact.first: Christos
contact.last: Proukakis
contact.email: c.proukakis@ucl.ac.uk
contact.address: Rowland Hill Street
contact.department: Clinical Neuroscience
contact.country: United Kingdom
contact.institute: UCL Institute of Neurology
organism: Homo sapiens
description: 16 PD relevant genes, filter quality >0.5, 20 kb aroud each gene (30 for NCA and park2, 50 for GBA), and 1 Mb at 10kb probe density around SNCA, park2, GBA
  
  Arrays of this design have barcodes that begin with 16046004 or 2546004.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Feature Extraction feature number.
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/