title: Agilent-044804 Custom Mouse Coding and LncRNA array 028005 (Feature Number version)
status: Public on Nov 21 2013
contact.city: University Park
contact.first: Ross
contact.last: Hardison
contact.email: rch8@psu.edu
contact.state: PA
contact.address: 303 Wartik Lab
contact.country: USA
contact.institute: Pennsylvania State University
organism: Mus musculus
description: SurePrint G3 Mouse GE 8x60K Microarray customized by Vikram
  The Agilent eArray platform was used to customize the SurePrint G3 Mouse GE 8x60K microarray to add 3 custom-designed probes (60nt length) each against several categories of genes, namely pseudogene, genes with small RNA overlap, low stringency lncRNAs and high stringency lncRNAs.
  Arrays of this design have barcodes that begin with 16044804 or 2544804.
  
  Orientation:
  Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
  
  The ID column represents the Agilent Feature Extraction feature number.
  
  Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
  
  To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
  
manufacture_protocol: see manufacturer's web site at http://www.agilent.com/