title: Nimblegen Naegleria gruberi 385K array, v1.0
status: Public on Sep 01 2010
contact.city: Berkeley
contact.first: Lillian
contact.last: Fritz-Laylin
contact.email: naegleria@berkeley.edu
contact.state: CA
contact.address: 345 LSA, UC Berkeley MCB
contact.department: MCB
contact.country: USA
contact.institute: UC Berkeley
organism: Naegleria gruberi
description: NimbleGen design name 080519_N_gruberi_UCBerk_LFL_expr, NimbleGen design ID 2451.   Array consists of 182,813 probes corresponding to 15,777 gene models predicted on the N.gruberi genome sequence version 1.0 (http://genome.jgi-psf.org/Naegr1/Naegr1.home.html), and an additional 963 orfs identified in intergenic regions (these orf ids can also be accessed via http://genome.jgi-psf.org/Naegr1/Naegr1.home.html).  Each gene is represented by 11 60-mer probes, and each probe set is replicated twice on the array.  The design includes control probes.
  
  Oligonucleotide sequences are available in the supplementary 'GPL10350_080519_N_gruberi_UCBerk_LFL_expr.ndf' file.
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/ .