title: NimbleGen 12-plex Gene Expression Array for Cynomolgus monkey (135K)
status: Public on Aug 25 2011
contact.city: Basel
contact.first: Tobias
contact.last: Heckel
contact.address: Grenzacherstr. 124
contact.country: Switzerland
contact.institute: F.Hoffmann-La Roche AG
organism: Macaca fascicularis
description: The NimbleGen design is based on the Cynomolgus monkey genome/transcriptome version: v3 transcriptome.  An expression design with 20,047 probe sets for 25,798 transcripts including transcript variants covering 16,896 genes with six 60-mer probes (PM) per probe set. The number of replicates is 1 - i.e., only one set of probes on the array. The design includes random GC and other control probes.
  
  NimbleGen design name: 091006_Cynomolgus_ERCC_expr_HX12
  
  Native array description files:
  091006_Cynomolgus_ERCC_expr.ndf
  091006_Cynomolgus_ERCC_expr.ngd
  
  The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.
  
  Transcript identifiers are composed as follows:
  
  The Macaca fascicularis ID_REF is composed of a human NCBI GeneID and a human NCBI RefSeq transcript ID orthologous to the Macaca fascicularis transcript (note that the category NM is omitted for the predicted Cynomolgus transcripts).
  
  Example: ID_REF = 10000_005465_cyno_0m0 = Cynomolgus transcript orthologous to human NCBI GeneID 10000 and human NCBI RefSeq ID NM_005465.
manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.