title: SuperArray GEArray Q series Mouse Cancer PathwayFinder Gene Array

description:
Each GEArray Q series Mouse Cancer PathwayFinder Gene Array is designed to rapidly assess the involvement of six biological pathways frequently altered during transformation and tumorigenesis. The deregulation of these biological pathways results in the emergence of hallmarks in a cancer cell such as its infinite replicative potential, escape from apoptosis, altered (abnormal) response to growth factor signaling, angiogenesis, and invasive and metastatic potential. Included in the GEArray Q series Mouse Cancer PathwayFinder Gene Array are 96 marker genes representing six important cancer-related biological pathways. Through a simple side-by-side hybridization, you can determine simultaneously which biological pathways are altered.
Catalog number MM-006 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Mouse Cancer Drug Resistance & Metabolism Gene Array

status: Public on Apr 09 2004

city: Frederick

first: SuperArray

last: Bioscience Corporation

state: MD

address: Suite 101, 7320 Executive Way

country: USA

institute: Technical Support

organism: Mus musculus

technology: spotted DNA/cDNA

description:
The GEArray Q series Mouse Cancer Drug Resistance & Metabolism Gene Array contains 96 genes involved in the body's response to chemotherapy. The genes encoding important enzymes for drug resistance (such as the P-glycoproteins), phase I metabolism (specifically the P450 family), and phase II metabolism (such as various covalent modification enzymes) are all represented on the array. (See the list below.) The expression of certain cancer-related genes also help determine aspects of resistance, and these are also included on the array such as DNA repair enzymes, cell cycle regulators, growth factor and hormone receptors, and transcription factors. Understanding the metabolism of potential chemotherapeutic agents as well as how easily resistance can be developed against them is an important aspect of their design. Through a simple side-by-side hybridization using your experimental RNA samples and the arrays and reagents provided in the kit, you can simultaneously determine the expression profile of these genes involved in the metabolism of and the development of resistance to cancer drugs.
Catalog number MM-019 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php

distribution: commercial

manufacture_protocol: see manufacturer's web site


title: SuperArray GEArray Q series Human Cancer PathwayFinder Gene Array

organism: Homo sapiens

description:
Each GEArray Q series Human Cancer PathwayFinder Gene Array is designed to rapidly assess the involvement of six biological pathways frequently altered during transformation and tumorigenesis. The deregulation of these biological pathways results in the emergence of hallmarks in a cancer cell, such as its infinite replicative potential, escape from apoptosis, altered (abnormal) response to growth factor signaling, angiogenesis, and invasive and metastatic potential. Included in the GEArray Q series Human Cancer PathwayFinder Gene Array are 96 key genes representing the six cancer-related biological pathways. Through a simple side-by-side hybridization, you can determine simultaneously which of these pathways are altered.
Catalog number HS-006 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Human Breast Cancer and Estrogen Receptor Signaling Gene Array

description:
The GEArray Q Series Human Breast Cancer/Estrogen Receptor Signaling Gene Array is designed for the investigation of breast cancer-related gene regulation and estrogen receptor-dependent signal transduction. Although the estrogen receptor plays an important role in the pathogenesis of many breast cancers, a number of additional estrogen-independent signaling pathways are also associated with the disease. Many genes are known to be preferentially expressed in breast cancer cells and thus serve as useful markers of the disease. The expression of other genes defines the prognosis of breast cancer, while the expression of still other genes is associated with the cancer cells' response to chemotherapy. All of these genes as well as those involved in the estrogen-signaling pathway are included on this array.
Catalog number HS-020 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Mouse Genome Stability/DNA Repair Gene Array

description:
The GEArray Q Series Mouse Genome Stability / DNA Repair Gene Array kit is designed to profile the expression of human genes known to be associated with maintaining genome stability. In mammalian cells, a network of biochemical pathways exists to maintain the functional and structural integrity of genome. The DNA repair system (including base, nucleotide, and mismatch excision) is a one of the major defense mechanisms cells use to minimize DNA mutations, damage, and replication errors. On the array, human genes are also included that share sequence homology with repair genes found in other organisms but whose function has yet to be verified in mammalian systems. Through a simple side-by-side hybridization using your experimental RNA samples, the arrays provided in this kit, and a SuperArray Probe Synthesis Kit (sold separately), you can simultaneously determine the expression profile of these 96 genes important for the maintenance of the genome.
Catalog number MM-042 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Human Cancer Drug Resistance & Metabolism Gene Array

description:
The GEArray Q Series Human Cancer Drug Resistance & Metabolism Gene Array contains 96 genes involved in the body's response to chemotherapy. The genes encoding important enzymes for drug resistance (such as the P-glycoproteins), phase I metabolism (specifically the P450 family), and phase II metabolism (such as various covalent modification enzymes) are all represented on the array. (See the list below.) The expression of certain cancer-related genes also helps determine aspects of resistance, and these are also included on the array such as DNA repair enzymes, cell cycle regulators, growth factor and hormone receptors, and transcription factors. Understanding the metabolism of potential chemotherapeutic agents as well as how easily resistance can be developed against them is an important aspect of their design. Through a simple side-by-side hybridization using your experimental RNA samples and the arrays and reagents provided in the kit, you can simultaneously determine the expression profile of these genes involved in the metabolism of and the development of resistance to cancer drugs.
Catalog number HS-019 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Mouse Angiogenesis Gene Array

description:
GEArray Q Series Mouse Angiogenesis Gene Array contains 96 genes known to be involved in modulating the biological processes of angiogenesis. Angiogenesis is a hallmark in the pathology of many diseases, including cancer, ischemia, atherosclerosis, and inflammatory diseases. Importantly, angiogenesis plays additional roles in normal development and physiological processes in the adult, including wound healing and tissue regeneration. With a simple side-by-side hybridization experiment, using your RNA samples and our GEArray Q Series Mouse Angiogenesis Gene Array kit, you can easily study the expression profile of these genes in your experimental system.
Catalog number MM-009 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Human Androgen Signaling and Prostate Cancer Gene Array

description:
GEArray Q Series Androgen Signaling and Prostate Cancer Gene Array is designed to assess the role of 96 genes in androgen-regulated processes that are involved in malignant transformation of prostate gland. Androgen signaling plays an important role in the pathogenesis of prostate cancer, as exemplified by androgen ablation therapy for advanced prostate cancer. Activation of the PI3K/AKT/FRAP pathway has also been found to contribute to hormone resistant growth of recurrent prostate cancer. On the Androgen Signaling and Prostate Cancer Gene Array, 96 prostate cancer-related genes have been grouped into the following categories: androgen receptor and androgen receptor-associated proteins, androgen exclusively-responsive genes, androgen-independent genes, target genes whose responsiveness to androgen changes during the course of prostate malignant transformation, PI3K/AKT/FRAP pathway related genes that are associated with hormone-refractory cell growth, and genes associated with invasive prostate cancer.
Catalog number HS-031 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Mouse Signal Transduction in Cancer Gene Array

description:
The GEArray Q Series Mouse Signal Transduction in Cancer Gene Array contains 96 genes that are indicators or markers for the activation of 15 different signal transduction pathways involved in oncogenesis. The following signaling pathways are all represented on this array: MAP kinase, WNT, Hedgehog, STAT, stress (DNA damage, p53, hypoxia, heat shock, and p38 / JNK), inflammation (Cox-2 and NFkB), survival (NFkB and PI3K / AKT), hormonal (estrogen and androgen), and anti-proliferation (TGF-beta). The characteristics of an individual tumor depend on its tissue of origin as well as genetic and environmental factors. A unique combination of pathways is thus activated or inactivated in each tumor leading to uncontrolled growth. The ability to profile multiple pathways at once allows for a rapid assessment of all of the possible routes to tumor formation. Therefore, this GEArray is not only an effective tool to determine the pathways associated with particular tumors or immortalized cells, but could also be a novel tool for cancer typing. Through a simple side-by-side hybridization using your experimental RNA samples, the arrays provided in this kit, and a SuperArray Probe Synthesis Kit (sold separately), you can simultaneously determine the expression profile of these 96 markers of signal transduction pathways involved in tumorigenesis.
Catalog number MM-044 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Mouse Androgen Signaling and Prostate Cancer Gene Array

description:
GEArray Q Series Androgen Signaling and Prostate Cancer Gene Array is designed to assess the role of 96 genes in androgen-regulated processes that are involved in malignant transformation of prostate gland. Androgen signaling plays an important role in the pathogenesis of prostate cancer, as exemplified by androgen ablation therapy for advanced prostate cancer. Activation of the PI3K/AKT/FRAP pathway has also been found to contribute to hormone resistant growth of recurrent prostate cancer. On the Androgen Signaling and Prostate Cancer Gene Array, 96 prostate cancer-related genes have been grouped into the following categories: androgen receptor and androgen receptor-associated proteins, androgen exclusively-responsive genes, androgen-independent genes, target genes whose responsiveness to androgen changes during the course of prostate malignant transformation, PI3K/AKT/FRAP pathway related genes that are associated with hormone-refractory cell growth, and genes associated with invasive prostate cancer.
Catalog number MM-031 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Human Stress Response to Cellular Damage Gene Array

description:
The GEArray Q Series Human Stress Response to Cellular Damage Gene Array is designed to systematically analyze the cellular stress response by profiling the expression level of genes encoding antioxidant and pro-oxidant enzymes, molecular chaperones and proteins involved in xenobiotic metabolism. Oxidative stress, hyperthermia, exercise, metabolic challenge, and aging are the major sources of stress that cause cellular damage. Prolonged and uncontrolled cellular damage contributes to a variety of diseases including atherosclerosis, diabetes, pulmonary fibrosis, neurodegeneration, and arthritis. To control and repair damage, cells respond to stress by increasing the expression of antioxidant enzymes to combat oxidative stress, chaperones and heat shock proteins to refold or sequester damaged proteins, and xenobiotic enzymes and transporters to eliminate foreign, unwanted and potentially cytotoxic molecules. This GEArray allows you to monitor the responses to specific stresses by detecting differences in the expression level of these genes between stressed and unstressed cells.
Catalog number HS-053 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Mouse Breast Cancer and Estrogen Receptor Signaling Gene Array

description:
The GEArray Q Series Mouse Breast Cancer/Estrogen Receptor Signaling Gene Array is designed for the investigation of breast cancer-related gene regulation and estrogen receptor-dependent signal transduction. Although the estrogen receptor plays an important role in the pathogenesis of many breast cancers, a number of additional estrogen-independent signaling pathways are also associated with the disease. Many genes are known to be preferentially expressed in breast cancer cells and thus serve as useful markers of the disease. The expression of other genes defines the prognosis of breast cancer, while the expression of still other genes is associated with the cancer cells' response to chemotherapy. All of these genes as well as those involved in the estrogen-signaling pathway are included on this array.
Catalog number MM-020 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Human Growth Factor Gene Array

description:
The GEArray Q Series Human Growth Factor Gene Array is designed to analyze the gene expression of common growth factors in your experimental model system. Growth factors play a vital role in various normal biological processes such as embryogenesis, wound healing and inflammation. These secreted proteins induce proliferation by binding to their cognate cell surface receptors. Many growth factors have very versatile functions. Besides inducing growth in one cell type, the same factors may also induce other responses (such as differentiation or migration) in different cell types. Unregulated expression of these growth factors often leads to the progression of certain disease states (such as atherosclerosis and tumorigenesis). This array includes genes encoding for members of the epidermal, fibroblast, platelet-derived, tumor, and neuronal growth factor families as well as a number of cytokines, the growth factors for immune cells. Through a simple side-by-side hybridization using your experimental RNA samples, the arrays provided in this kit, and a SuperArray Probe Synthesis Kit (sold separately), you can simultaneously determine the expression profile of these 96 growth factor genes.
Catalog number HS-041 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q series Human Stress & Toxicity PathwayFinder Gene Array

description:
GEArray Q series Human Stress & Toxicity PathwayFinder Gene Array contains 96 genes whose expression change is indicative for stress and toxicity. The cellular response to toxicity is commonly manifested as one of four physiological processes: proliferation/carcinogenesis, growth arrest/senescence, inflammation or cell death. Cell death can occur by apoptosis or necrosis. Depending on the mechanism, the genes involved in apoptosis or necrosis can be grouped into four categories: oxidative and metabolic stress, heat shock, DNA damage and repair, and apoptotic signaling. The GEArray Q series Human Stress & Toxicity PathwayFinder Gene Array kit is designed to include only those genes that have been reported in the literature to respond to a toxic compound at the transcriptional level. Through a simple side-by-side hybridization, using your RNA and the arrays and reagents provided, you can determine which genes are involved in your experimental system.
Catalog number HS-012 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Mouse DNA Damage Signaling Pathways Gene Array

description:
GEArray Q Series Mouse DNA Damage Signaling Pathway gene array kit was designed to profile the expression of 96 key genes involved in DNA damage signaling pathways. The genes featured are those associated with the ATR/ATM signaling network and transcriptional targets of DNA damage response. These DNA damage-signaling pathways can be categorized into three functional groups: cell cycle arrest, apoptosis, and genome stability & repair pathways. Through a simple side-by-side hybridization, using your RNA samples and the arrays and reagents provided in the kit, you can simultaneously determine the expression profile of these 96 genes.
Catalog number MM-029 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q series Human Apoptosis Gene Array

description:
GEArray Q series Human Apoptosis Gene Array is designed to profile the expression of 96 key genes involved in apoptosis. The genes are grouped into eleven categories according to their functional and structural features, and include the TNF ligands, TNF receptors, bcl-2, caspases, IAP, TRAF, CARD, death domain family members, death effector domain family members, CIDE domain family members, as well as genes involved in the p53 and ATM pathways. Through a simple side-by-side hybridization, using your experimental RNA samples and the arrays and reagents provided in the kit, you can determine simultaneously the expression profile of these 96 genes involved in apoptosis.
Catalog number HS-002 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q series Mouse Stress & Toxicity PathwayFinder Gene Array

description:
Each GEArray Q series Mouse Stress & Toxicity PathwayFinder Gene Array contains 96 genes whose expression change is indicative for stress and toxicity. The cellular response to toxicity is commonly manifested as one of four physiological processes: proliferation/carcinogenesis, growth arrest/senescence, inflammation or cell death. Cell death can occur by apoptosis or necrosis. Depending on the mechanism, the genes involved in apoptosis or necrosis can be grouped into four categories: oxidative and metabolic stress, heat shock, DNA damage and repair, and apoptotic signaling. The GEArray Q series Mouse Stress & Toxicity PathwayFinder Gene Array kit is designed to include only those genes that have been reported in the literature to respond to a toxic compound at the transcriptional level. Through a simple side-by-side hybridization, using your RNA and the arrays and reagents provided, you can determine which genes are involved in your experimental system.
Catalog number MM-012 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray Nylon-on-Glass GEArray: Human Apoptosis & Cell Cycle Gene Array

description:
The Nylon-on-Glass GEArray Human Apoptosis & Cell Cycle Gene Array provides you with an effective tool to evaluate cellular responses to various potential stresses and toxic agents. Apoptosis and cell cycle regulation are the final arbiters of cell fate based on stress and toxicity signaling. These signals include exogenous agents such as drugs, temperature, radiation, hypoxia and nutrients that stimulate the cellular adaptive, sensory and signaling machinery. Signals may also include endogenous agents such as oncogenic proteins and cytokines. The stress response may influence cell cycle regulation, cellular differentiation, oncogenesis, cell survival and apoptosis. Also, the stress tolerances of cancer cells are directly linked to anticancer drug effectiveness and resistance. This GEArray contains 96 key apoptosis genes, 96 key cell cycle regulation genes and 75 stress & toxicity genes. Through a side-by-side hybridization using your experimental and control samples, you can simultaneously determine the gene expression of various cell fate-determining genes in your target cells or tissue and the type of cellular stress to which they have been exposed.
Catalog number HSV-603 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray S Series Human Apoptosis & Cell Cycle Gene Array

description:
The GEArray S Series Human Apoptosis & Cell Cycle Gene Array provides you with an effective tool to evaluate cellular responses to various potential stresses and toxic agents. Apoptosis and cell cycle regulation are the final arbiters of cell fate based on stress and toxicity signaling. These signals include exogenous agents such as drugs, temperature, radiation, hypoxia and nutrients that stimulate the cellular adaptive, sensory and signaling machinery. Signals may also include endogenous agents such as oncogenic proteins and cytokines. The stress response may influence cell cycle regulation, cellular differentiation, oncogenesis, cell survival and apoptosis. Also, the stress tolerances of cancer cells are directly linked to anticancer drug effectiveness and resistance. This GEArray contains 96 key apoptosis genes, 96 key cell cycle regulation genes and 75 stress & toxicity genes. Through a side-by-side hybridization using your experimental and control samples, you can simultaneously determine the gene expression of various cell fate-determining genes in your target cells or tissue and the type of cellular stress to which they have been exposed.
Catalog number HS-603 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Human DNA Damage Signaling Pathways Gene Array

description:
GEArray Q Series Human DNA Damage Signaling Pathway gene array kit was designed to profile the expression of 96 key genes involved in DNA damage signaling pathways. The genes featured are those associated with the ATR/ATM signaling network and transcriptional targets of DNA damage response. These DNA damage-signaling pathways can be categorized into three functional groups: cell cycle arrest, apoptosis, and genome stability & repair pathways. Through a simple side-by-side hybridization, using your RNA samples and the arrays and reagents provided in the kit, you can simultaneously determine the expression profile of these 96 genes.
Catalog number HS-029 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q Series Human Angiogenesis Gene Array

description:
GEArray Q Series Human Angiogenesis Gene Array contains 96 genes known to be involved in modulating the biological processes of angiogenesis. Angiogenesis is a hallmark in the pathology of many diseases, including cancer, ischemia, atherosclerosis, and inflammatory diseases. Importantly, angiogenesis plays additional roles in normal development and physiological processes in the adult, including wound healing and tissue regeneration. With a simple side-by-side hybridization experiment using your RNA samples and our GEArray Q Series Human Angiogenesis Gene Array kit, you can easily study the expression profile of these genes in your experimental system.
Catalog number HS-009 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: SuperArray GEArray Q series Mouse Apoptosis Gene Array

description:
GEArray Q series Mouse Apoptosis Gene Array is designed to profile the expression of 96 key genes involved in apoptosis. The genes are grouped into eleven categories according to their functional and structural features, and include the TNF ligands, TNF receptors, bcl-2, caspases, IAP, TRAF, CARD, death domain family members, death effector domain family members, CIDE domain family members, as well as genes involved in the p53 and ATM pathways. Through a simple side-by-side hybridization, you can determine simultaneously the expression profile of these 96 genes involved in apoptosis by using your experimental RNA samples and the arrays and reagents provided in the kit.
Catalog number MM-002 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: in-house cDNA microarray 1

status: Public on Apr 03 2004

city: Tokyo

first: Motoyuki

last: Otsuka

department: Department of Gastroenterology

country: Japan

institute: University of Tokyo

description: In-house cDNA microarray for digestive diseases analyses which consists of 4,300 cDNAs derived from mainly liver and gastric tissues and cell lines (Otsuka M et al.Hepatol Res. 2003;27:76-82) PCR-amplified cDNA products were mixed with nitrocellulose in dimethylsulfoxide just before printing, and then spotted onto carbodiimide-coated glass slides using an SPBIO-2000 system (Hitachi Software Engineering Co, Yokohama, Japan).

distribution: non-commercial


title: CR-UK DMF Human 6.5k genome-wide array

status: Public on Mar 16 2004

city: Cambridge

first: Ahmed

middle: Ashour

last: Ahmed

address: Robinson Way

department: Oncology, University of Cambridge

country: United Kingdom

institute: Cancer Research UK Cambridge Research Institute

description: A cDNA microarray


title: MCW rat 18k B2

status: Public on Mar 05 2004

city: Milwaukee

first: Mingyu

last: Liang

state: WI

institute: Medical College of Wisconsin

organism: Rattus norvegicus

description: MCW rat 18k B2 2003


title: Differential male salivary gland genes-A2

status: Public on Apr 08 2004

city: Stillwater

first: Richard

middle: C.

last: Essenberg

state: OK

address: 246 NRC

department: Department of Biochemistry and Molecular Biology

institute: Oklahoma State University

organism: Dermacentor andersoni

description: Differentially expressed bands from the differential display gels were cut out, eluted and amplified.  Successfully amplified ones were cloned into pDrive (Qiagen).  The cDNA fragment clones were denatured in 0.5N NaOH and 20mM EDTA at 65oC for 1 hour, then spotted onto nylon membranes by a Seiko model X 5000 cartesian robot (Seiko Instruments Inc., Japan) to create the macroarray.  Each cDNA fragment was applied to three corners of a 4.5 mm square on the 16 x 24 pattern.  The fourth corner of the square was left blank for a control. The positive controls used were tick genomic DNA from D. andersoni and two cDNA fragments (standards 1 and 2) that appeared to be expressed in all three groups of experimental ticks from the differential display The negative controls were buffer and pBluescript vector. These clones were from amplification with primers A1 + A2

first: Felix

middle: M

last: Anyomi

middle: C

first: John

middle: R

last: Sauer


title: SuperArray GEArray Q Series Human Glucocorticoid Signaling Gene Array

description:
The GEArray Q Series Human Glucocorticoid Signaling I Gene Array is designed to the profile the expression of genes controlling apoptosis and inflammation through the glucocorticoid-signaling pathway. The genes on this array represent the GC receptors and their associated proteins, targets involved in inducing apoptosis, and targets involved in suppressing inflammation. Glucocorticoids (GCs) are vital steroid hormones present in every human organ. They control a variety of physiological functions including immune responses, metabolism, cell growth and proliferation, development and reproduction. As seen below, the pro-apoptotic and anti-inflammatory functions of GCs result from both the induction and repression of gene expression. The distinct anti-proliferative function of GCs has led to their wide use as effective drugs for immunosuppression, treatment of inflammatory and immune diseases, and induction of cytotoxicity. Their ability to induce apoptosis has been used effectively to treat hematological malignancies including leukemia, lymphoma and myeloma. Therefore, this array can help you systematically study GCs signaling, screen for biologicals to enhance or inhibit GC signaling, and further examine the role of GCs in apoptosis and inflammation.
Catalog number HS-045 (Superarray, Frederick, MD)
Platform_weblink: http://www.superarray.com/home.php


title: Superarray - GEArray Q Series Human PathwayFinder Gene Array

status: Public on Mar 24 2004

first: Yue

last: Wang

institute: SuperArray

description:
GEArray Q Series Signal Transduction PathwayFinder Gene Array contains 96 marker genes associated with 18 signal transduction pathways. Through a simple side-by-side hybridization using your experimental RNA samples, the arrays and reagent provided in this kit, and a SuperArray probe synthesis kit (sold separately), you can determine whether any of the 18 signal transduction pathways may be involved in your experimental system. You can then use our other pathway-specific GEArrays to further analyze changes in gene expression in the pathway pertinent to your research. For example, if you find expression differences in the NFkB marker genes, you can then use our GEArray Q Series NFkB Pathway Gene Array to study this pathway in depth.

Superarray Catalog number HS-008.

Keywords = signal transduction


title: Chlamydomonas reinhardtii v1.0

status: Public on Apr 01 2004

city: Berkeley

first: Heidi

middle: Kristine

last: Ledford

state: CA

address: 111 Koshland Hall

department: Plant and Microbial Biology

institute: University of California, Berkeley

organism: Chlamydomonas reinhardtii

description: The first generation of Chlamydomonas reinhardtii microarrays (v1.0) consisted of four replica sets ("multi-sets") of 2,761 unique EST sequences.


title: Arabidopsis thaliana (ecotype Columbia) chromosome 4 knob genomic tiling array

status: Public on Mar 31 2004

city: Austin

first: Matthew

middle: Wayne

last: Vaughn

state: TX

address: 10100 Burnet Rd

department: Texas Advanced Computing Center

institute: University of Texas at Austin

organism: Arabidopsis thaliana

description:
This array includes 1724 PCR products, mostly 1kb long, designed to cover sequentially a 1.5 Mb region 1201322-2673088 on the short arm of chromosome 4, plus an additional thirty-six 10kb regions located on the 5 chromosomes. As spots are printed in duplicate or triplicate on the slide, the total number of features is 5743.
PCR products are amplified from BACs or genomic DNA, purified, and spotted (100-120 um average diameter) on 25x75 mm aminosilane-coated Corning CMT-GAPS II glass slides
Most features are spotted more than once. Replicate spots are identified by an _[0-9] appended to the end of the feature ID. For example, pc13a09F.1044.4.2387459.T4B21_1 is the first instance of the feature pc13a09F.1044.4.2387459.T4B21.
PCR products are printed in 3xSSC
Printed slides are plunged in boiling water for 5' to denature PCR products before hybridization.
Keywords = genomic
Keywords = tiling
Keywords = PCR product

middle: W

first: Neilay

last: Dedhia

first: Vincent

last: Colot

first: Robert

middle: A

last: Martienssen


title: Fol expression data

status: Public on Mar 22 2004

city: Rehovot

last: Fluhr

department: Plant Sciences

country: Israel

institute: Weizmann Institute of Science

organism: Fusarium oxysporum

description:
The data include cDNA microarray expression data of Fusarium oxysporum f.sp. lycopersici (race 2) during nutrient starvation. 6 experiments, each of nitrogen starvation and carbon starvation were performed. The microarray is comprised of approximately 1000 clones made by the Suppression Subtractive Hybridization (SSH) procedure. Each clone was spotted three times on the array.
Keywords = nutrient starvation

first: Hege

middle: H

last: Divon

first: Beatrice

last: Rothan-Denoyes

first: Olga

last: Davydov

first: Antonio

last: Di Pietro


title: Differential male salivary gland genes-A3

description: Differentially expressed bands from the differential display gels were cut out, eluted and amplified.  Successfully amplified ones were cloned into pDrive (Qiagen).  The cDNA fragment clones were denatured in 0.5N NaOH and 20mM EDTA at 65oC for 1 hour, then spotted onto nylon membranes by a Seiko model X 5000 cartesian robot (Seiko Instruments Inc., Japan) to create the macroarray.  Each cDNA fragment was applied to three corners of a 4.5 mm square on the 16 x 24 pattern.  The fourth corner of the square was left blank for a control. The positive controls used were tick genomic DNA from D. andersoni and two cDNA fragments (standards 1 and 2) that appeared to be expressed in all three groups of experimental ticks from the differential display The negative controls were buffer and pBluescript vector. These clones were amplified with the A1 + A3 primer pair.


title: Caulobacter oligo array (X Printing)

status: Public on Mar 23 2004

city: Stanford

first: Peter

last: Brende

address: 279 Campus Dr

department: Developmental Biology

institute: Stanford University

organism: Caulobacter vibrioides

technology: spotted oligonucleotide

description:
Spotted oligonucleotide array on glass.
The array contains at least 1 50-mer probe for each ORF in Caulobacter vibrioides.

middle: B

first: Harley

last: McAdams


title: 70 bp yeast oligo array

status: Public on Mar 01 2004

city: Saint Louis

first: Justin

last: Fay

state: MO

address: 4566 Scott Ave, Box 8232

department: Genetics

institute: Washington University

organism: Saccharomyces cerevisiae

description:
Spotted 70 bp oligonucleotide array on glass.
6144 probes from Qiagen, Operon.
Platform_keywork: spotted, long oligonucleotide


title: PSU_IntergenicYeast_V1

city: University Park

first: Frank

last: Pugh

state: PA

address: 452 North Frear Laboratory

department: Biochemistry and Molecular Biology

institute: The Pennsylvania State University

description:
PCR amplified yeast intergenic chip with ResGen Primer Pairs; Amplification as described at http://cmgm.stanford.edu/pbrown/protocols/2_DNA.html
Printed on aminosaline glass slides by the Penn State University Microarray facility
Keywords = spotted Yeast intergenic

first: Sara

middle: J

last: Zanton


title: Negative Subtraction Hybridization ESTs

status: Public on Mar 14 2004

first: Patricia

last: Ayoubi-Canaan

address: 246 Noble Research Center

organism: Aspergillus nidulans

description:
Tip Configuration: Standard 8-tip
Block: 24
Column: 16
Row: 12
Column Spacing: 250
Row Spacing: 250

Keywords = NSH
Keywords = subtraction
Keywords = aspergillus
Keywords = polysaccharide
Keywords = exopolygalacturonase

first: Anamika

last: Ray

first: Sunita

last: Macwana

last: Ayoubi

first: Leo

last: Hall

first: Rolf

last: Prade

first: Andrew

last: Mort


title: Mouse 13.4K long oligonucleotide array (Operon)

status: Public on Feb 26 2004

city: Malmö

first: Harry

last: Björkbacka

address: CRC 91:12, UMAS entrance 72

department: Dept. of Clinical Sciences, Malmö

country: Sweden

institute: Lund University

description:
The Operon version 1.1 oligonucleotide probe set (70-mers) was printed in the Massachusetts General Hospital microarray core facility using an OmniGrid 100 (GeneMachines) on CodeLink activated slides (Amersham).
Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine.
Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber.
Unreacted groups on the slide surface were blocked with 150 mM glycine, 0.1 M tris, 0.1% N-lauroyl sarcosine, pH 9.
Keywords = spotted, long oligonucleotide, Operon

first: Glenn

middle: F

last: Short

first: Jocelyn

last: Burke

first: Najib

last: El Messadi

first: Jing

last: Wang

last: Bjorkbacka


title: Chromosomal alteration study using high resolution BAC array

status: Public on Feb 29 2004

city: Columbus

first: Nehad

last: Mohamed

state: OH

address: 420W12th Ave

department: Comperhensive Cancer Center/HCG

institute: The Ohio State University

description:
36 RPCI-11 BAC clones covering the q-arm of chromosome21 from position15.1MB(close to the centromere)to the telomeric position 46.9 MB with an average gap between clones of 800 kb (range 346-1593 kb)In addition 23 randomly selected clones, each representing 1 of the remaining chromosomes1-20,22,X and YPositions of genes and BAC clones were determined according to the NCBI (http://www.ncbi.nlm.nih.gov/mapview) 59 BAC clones spotted in 6 replicas for a total 354 spots on GAPII corning glass slides using Affymetrix GMS417 Affymetrix Arrayer with 4-ring&pin configuration. (Affymetrix,Santa Clara, CA). Purified clones spotted in 50%DMSO DNA Isolation of these clones was performed from bacterial culture (250ml) using Qiagen midi kit (Qiagen, Valencia CA)
Platfom_submitter: Nehad Mohamed
Platform_submitter e-mail: mohamed-1@medctr.osu.edu
Platform_submitter weblink: www.dnaarrays.org
Keywords = neoplasia, meyloid leukemia, and  dysplasia, chromosomal alterations

first: Claudia

middle: D

last: Baldus

first: Albert

last: Chapelle

first: Herbert

last: Auer

first: Sandya

last: Liyanarachchi

first: Krzysztof

last: Mrozek

first: Stephan

last: Tanner

first: Martin

last: Guimond

first: Amy

middle: S

last: Ruppert

first: Ramana

middle: V

last: Davuluri

first: Michael

last: Caligiuri

first: Clara

last: Bloomfield


title: Operon Long Oligo, V1

city: Dallas

first: John

middle: G

last: Maresh

address: 5323 Harry Hines

department: Internal Medicine

institute: U.T. Southwestern Medical Center

description: Operon long oligo set


title: PSU_Yeast6000_V1

status: Public on Feb 27 2004

city: Ithaca

first: B. Franklin

last: Pugh

email: fp265@cornell.edu, bfp2@psu.edu

state: NY

address: 465 Biotechnology Bldg.

department: Molecular Biology and Genetics

institute: Cornell University

description:
PCR amplified yeast ORF chip from strain S288C with ResGen Primer Pairs; Amplification as described at http://cmgm.stanford.edu/pbrown/protocols/2_DNA.html
Printed on aminosaline glass slides by the Penn State University Microarray facility; Tip Configuration: Standard 16-tip; Columns per block: 20; Column spacing: 225 microns Row spacing: 225 microns
Keywords = spotted Yeast ORF

first: Kathryn

middle: L

last: Huisinga


title: Human BAC to study Chromosome 21 abnormalities

address: 420 West 12th Ave

institute: Human Cancer Genetics

description:
36 RPCI-11 BAC clones covering the q-arm of chromosome21 from position15.1MB(close to the centromere)to the telomeric position 46.9 MB with an average gap between clones of 800 kb (range 346-1593 kb)	In addition 23 randomly selected clones, each representing 1 of the remaining chromosomes1-20,22,X and Y"Positions of genes and BAC clones were determined according to the NCBI (http://www.ncbi.nlm.nih.gov/mapview) 59 BAC clones spotted in 6 replicas for a total 354 spots on GAPII corning glass slides using Affymetrix GMS417 Affymetrix Arrayer with 4-ring&pin cofiguration. (Affymetrix,Santa Clara, CA). Purified clones spotted in 50%DMSO" DNA Isolation of these clones was performed from bacterial culture (250ml) using Qiagen midi kit (Qiagen, Valencia CA).
Keywords = Chromosome 21 copy number alterations


title: MEPC3.4K

status: Public on Feb 25 2004

city: New Haven

first: E. Janet

last: Hager

state: CT

address: 300 George Street, Suite 2110

department: W.M. Keck Foundation Biotechnology Resource Laboratory

institute: Yale University School of Medicine

description: Mouse Endocrine Pancreas Consortium 3.4K cDNA array. The array has 24 columns and 18 rows in each of 4 x 4 subarrays. There are two identical arrays on each slide.

first: Janet


title: UW_CEA_Mouse_MU_HD2_011022

status: Public on Feb 24 2004

city: Seattle

first: Richard

last: Beyer

state: WA

address: 4225 Roosevelt Way, NE, Suite 100

institute: University of Washington

description: University of Washington Center for Expression Arrays Spotted cDNA glass slides, Mouse_1-20_MU-HD-2_011022

middle: P


title: UW_CEA_Mouse_MU_HD1_011022

description: University of Washington Center for Expression Arrays Spotted cDNA glass slides


title: 15 K cDNA

organism:
Homo sapiens
Mus musculus

description: Mouse and human 15,000 gene cDNA array


title: HU4.6K

description: Human 4.6K cDNA from Research Genetics are arrayed in a 4 X 4 array with 24 X 24 spots in each subarray. Each cDNA has duplicate adjacent spots. There are two identical arrays on each slide.


title: AR12K

description: Arabidopsis AR12K is a cDNA array generated from MSU clone set. The array is in 32 pin conformation. It has 24 columns and 16 rows in each of 4 x 8 subarrays.


title: ORR4.8K

description: Rat ORR4.8K array is from a set of 4.8K Compugen 65 mer oligos. Each oligo has two replicate spots. The array has 25 col x 25 rows in each of 4 x 4 subarrays. There are two arrays on each slide.


title: UCSF 6Hs Human v.2 Oligo Array

status: Public on Feb 13 2004

city: San Francisco

middle: E.

last: Salazar

address: 1550 Fourth Street, RM 545

institute: University of California, San Francisco

description:
Spotted long oligonucleotide array on glass.
Keywords = spotted, long oligonucleotide

middle: E

first: David

last: Erle


title: OHU16K

description: Human OHU16K array is created from of 16K Operon Version 2.0 -70 mer oligos. The array is in 32 pin conformation with 24 columns and 22 rows and only 4 spots on the 23rd row.


title: OAR27K

description: Arabidopsis OAR27K array is created from a set of 27K Operon 70 mer oligos. The array has a 48 pin conformation with 24 columns and 24 rows in each of 4 x 12 subarrays.


title: OMM13K

description: Mouse OMM13K cDNA array is created from a set of 13K Operon 70 mer oligos. The array is in 32 pin conformation. It has 24 columns and 18 rows in each of 4 x 8 subarrays.


title: Rat ADME array

status: Public on Dec 13 2003

city: Chiba

first: Kensuke

last: Kojima

state: Chiba

department: Graduate School of Pharmaceutical Sciences

institute: Chiba University

description: Glass cDNA microarrays containing about 1,800 rat genes

distribution: custom-commercial


title: BMAP

status: Public on Nov 20 2003

first: Angela

middle: Dawn

last: Armendariz

address: 318 Morgan Hall

department: Nutritional Science and Toxicology

description: 11,000 mouse cDNAs from the Brain Molecular Anatomy Project (BMAP) library (Research Genetics) (project website: http://brainest.eng.uiowa.edu/)


title: ZmDB Array Unigene-1-01-07

status: Public on Oct 29 2003

city: Rosario

first: Paula

last: Casati

state: Santa Fe

address: Suipacha 531

department: Biological Sciences

country: Argentina

institute: Universidad Nacional de Rosario

organism: Zea mays

description: Maize Unigene I arrays fabricated by the Maize Gene Discovery Project contain 5664 ESTs (for more information, see http://gremlin3.zool.iastate.edu/zmdb/microarray/).   Within these arrays, the cDNA samples are printed three times next to each other; consequently, average signal intensities and the ratio between co-hybridized samples could be assessed multiple times within each microarray and within experiments.  These arrays contain cDNAs recovered from libraries of mixed adult tissues (707 and 945), mixed stages of embryo development (687), and salt-stressed roots (603).

first: Virginia

last: Walbot


title: yeast32canada

status: Public on Feb 16 2004

city: Madrid

first: Javier

last: Arroyo

state: Madrid

address: Plaza Ramon y Cajal S/N

department: Microbiologia II

country: Spain

institute: Facultad de Farmacia (UCM)

description:
32 subarrays (spots organised in 20 rows and 20 columns per subarray)
distributed in 8 rows and 4 columns of subarrays.
Controls are 3XSSC and Arabidopsis


title: ISB Halobacterium ORF microarray 04743-4772

status: Public on Feb 18 2004

middle: Hiroshi

last: Johnson

address: 1441 North 34th Street

department: Computational Biology

institute: Institute for Systems Biology

organism: Halobacterium salinarum NRC-1

description:
Layout of the ISB's spotted-oligonucleotide microarray, for ISB Halobacterium arrays 04743-4772.
Keywords = Halo
Keywords = ISB
Keywords = Institute for Systems Biology
Keywords = Halobacterium

first: Nitin

last: Baliga

first: Bruz

last: Marzolf


title: ISB Halobacterium ORF microarray 04678-04707

status: Public on Feb 14 2004

description:
Layout of the ISB's spotted-oligonucleotide microarray, for ISB Halobacterium arrays 04678-04707
Keywords = Halo
Keywords = ISB
Keywords = Institute for Systems Biology
Keywords = Halobacterium


title: ISB Halobacterium ORF microarray

description:
Layout of the ISB's spotted-oligonucleotide microarray, for ISB Halobacterium arrays 3883-3910.
Keywords = Halo
Keywords = ISB
Keywords = Institute for Systems Biology
Keywords = Halobacterium


title: Burnham Mouse B Array

status: Public on Oct 08 2003

city: La Jolla

first: Jih-tung

last: Pai

institute: The Burnham Institute

description: Description file for Mouse B array built in The Burnham Institute. Best Mouse and Human UniGene databases blast results with E values are included as references.

first: Erkki

last: Ruoslahti


title: MWG E. coli O157

status: Public on Oct 07 2003

city: High Point

last: MWG Biotech

state: NC

address: 4170 Mendenhall Oaks Parkway, Suite 160

institute: MWG Biotech

organism: Escherichia coli

description: The MWG E. coli O157 Array is a hybrid array comprising three different E. coli strains. The array is composed of 6176 50-mer oligonucleotides specific for E. coli strain K12 (MG1655), E. coli strain O157:H7 (EDL 933) and E. coli strain O157:H7 (RIMD0509952 / VT2-Sakai), the latter being isolated in the Sakai outbreak in Japan 1996. Oligonucleotides specific for each of these strains have been designated by the acronyms B (E. coli K12 strain MG1655), E (E. coli O157:H7 strain RIMD 0509952 / VT2-Sakai) and Z (E. coli O157:H7 strain EDL 933). A scheme of the oligonucleotide specificities for the respective strains is shown in the array manual.


title: UCSF 7Mm version 2 mouse long oligo array

status: Public on Jan 28 2004

first: Michael

description:
Spotted long oligonucleotide array on glass.
Keywords = spotted
Keywords = long oligonucleotide


title: OHU21K

description: Human OHU21K array is created from a set of 21K Operon Version 2.1 -70 mer oligos. The array is in 48 pin conformation. It has 24 columns and 20 rows in each of 4 x 12 subarrays.


title: UCSF 4Hs Human v.2 Oligo Array


title: elegans_Bprint_YMD.gal.txt

status: Public on Dec 31 2003

first: Valerie

last: Reinke

address: 333 Cedar St

organism: Caenorhabditis elegans

description: B print done at Yale University


title: angiogenesis

status: Public on Nov 25 2003

city: Adelaide

first: Anna

last: Tsykin

state: SA

address: Frome Road

department: Hanson Institute

country: Australia

institute: SA Pathology

description:
Cell culture - In vitro capillary tube model:
HUVEC were isolated as described previously[Gamble,1993] and cultured in gelatin-coated flasks in M199 medium with Earles balanced salts and 0.68 mM glutamine, 20 mM Hepes, 20% FCS, 15 ug/ml endothelial cell growth supplement (ECGS, BD Biosciences, Bedford, MA, USA), 50 U/ml penicillin, 50 U/ml streptomycin and 15 ug/ml heparin (Sigma, St. Louis, MO, USA).
The capillary tube formation assay was performed as previously described[Gamble,1993]. Briefly, 6.4 x 104 cells/160 ul  HUVEC medium were plated onto 100 ul gelled bovine type I collagen (Celtrix Laboratories, Palo Alto, CA, USA) in 96-well flat-bottomed microtitre plates. Capillary tube formation was stimulated by the addition of 20 ng/ml phorbol myristate acetate (PMA) and an antibody against A2B1-integrin (RMAC11) which promotes the formation of complex multicellular tubes.
Generation of subtracted cDNA libraries:
HUVEC from 3 different umbilical cords were plated onto 100ul of bovine type I collagen in 96-well microtitre plates (15 wells/cord). At times 0, 0.5, 3, 6 and 24 hours after stimulation with PMA and RMAC11, total RNA was isolated using the TRIZOL
procedure (Invitrogen, Carlsbad, CA, USA). These times were chosen because they approximate time points at which distinct morphological events are known to occur[Gamble,1993;Meyer,1997]. Yields of 7-13ug of total HUVEC RNA were obtained. To achieve enough mRNA for subtraction experiments, the "Switching Mechanism At the 5' end of RNA Transcript" (SMART) PCR cDNA synthesis procedure (Clontech, Palo Alto, CA, USA) was used to convert the mRNA to cDNA and to preferentially amplify full length
cDNAs. The PCR Select? cDNA Subtraction Kit (Clontech) was then used to perform suppression subtractive hybridisation between each adjacent time point in both the forward and reverse orientation. Four forward and four reverse libraries were then generated by digesting the subtracted cDNAs with EagI and cloning into the NotI site in pBluescriptIISK+ (Stratagene, La Jolla, CA, USA). These libraries were used to transform XL-10 Gold? ultracompetent bacteria (Stratagene).
Generation and probing of microarrays:
Generation of microarrays was performed by the Australian Genome Research Facility (AGRF, Melbourne, Australia). Colonies from the forward subtracted libraries (0-0.5h 3200 colonies; 0.5-3h; 3000 colonies, 3-6h, 2800 colonies; 6-24h, 1000 colonies) were robotically picked and glycerols stocks generated. A total of 10,000 clones were picked. Each clone was then PCR amplified using primers to the T7 and T3 promoters in the vector that flank the cloning site. The PCR products were microarrayed
onto glass slides in duplicate.

The cDNAs used in this microarray were identified as part of collaborative project between the IMVS and Bionomics Limited. The project aims were to identify genes up-regulated during in vitro capillary tube formation as targets for angiogenesis-based therapeutics.

Any requests for further information regarding the data generated from this collaboration should be directed to Bionomics Limited (www.bionomics.com.au) at the following address:

Bionomics Limited
31 Dalgleish Street
Thebarton, South Australia
Australia, 5031
Phone: 618 8354 6104
Fax: 618 8354 6199
Email: busdev@bionomics.com.au
Keywords = in-vitro
Keywords = HUVEC
Keywords = capillary tube formation

first: Jennifer

middle: R

last: Gamble

first: Mathew

last: Vadas

first: Christopher

middle: N

last: Hahn


title: SuperArray GEArray Q Series Mouse Chemokine & Receptor Gene Array

status: Public on Nov 13 2003

city: Frederick

first: SuperArray

last: Bioscience Corporation

address: Suite 101, 7320 Executive Way

institute: Technical Support

description:
GEArray Q series Mouse Chemokines and Receptors Gene Array contains 67 chemokine and chemokine receptor genes. The regulation of chemokine and chemokine receptor expression plays fundamental roles in the development, homeostasis, and function of immune system. It is also evident they function in other cell types, such as endothelial cells and cells of the nervous system. Through a simple side-by-side hybridization, you can determine the expression profile of these chemokine and their receptor genes by using your experimental RNA samples and the array and reagents provided in the kit.
Catalog number MM-005 (Superarray, Bethesda, MD)
Platform_weblink: http://www.superarray.com/home.php


title: MWG Zebrafish 14K-2 Array

organism: Danio rerio

description: Total number of spots: 14240 (14K-1 Array: 7296; 14K-2 Array: 6944). One oligonucleotide per gene.  Additional EST clustering and annotation information. NCBI zebrafish ESTs were clustered with Paracel's transcript assembler (PTA 2.5.9). ORFs were annotated using framefinder (ESTate package 0.5.0) combined with protein similarity searches using BLASTP. Databases searched included genpept (release 128) and pir nref (release 1.0).


title: MWG Zebrafish 14K-1 Array


title: MWG Mouse 10K C Array

description: Array of oligonucleotide probes covering 9052 mouse genes Including 36 Replicas and 96 Arabidopsis negative controls. Information sources: NCBI Genbank Release 129.0, Refseq, Ensembl Mouse Release 5.3


title: Rheumatoid Arthritis platform

status: Public on Nov 30 2003

city: Paris

first: El Houdaigui

last: Fatiha

department: Immunology Department

country: France

institute: Institut Cochin

description: Rheumatoid Arthritis platform


title: MWG Rat 10K Array

description: The MWG Rat 10K Array extends the 5K array with an additional 1392 known rat mRNAs plus 4105 annotated ORFs from an in-house MWG EST sequencing project. The added genes are represented by 4180 unique oligos.  Three different rat strains were sequenced during MWG's EST sequencing project: SHRSP (stroke-prone spontaneously hypertensive rats), WKY (wistar kyoto rats) and SD (sprague dawley rats). The sequenced tissues include brain, heart, liver and kidney.


title: NIA15K

status: Public on Feb 11 2004

first: E. Janet

last: Hager

description: Mouse NIA 15K cDNA clone set was made available to us from NCI. The array is in 32 pin conformation. It has 24 columns and 21 rows in each of 4 x 8 subarrays.

first: Janet


title: Burnham Mouse A Array

description: Description file for Mouse A array built in The Burnham Institute. Best results of Mouse and Human UniGene blast with E values are listed as references.


title: MWG Mouse 10K A Array

description: Array of oligonucleotide probes covering at least 9853 mouse genes Including 27 Replicas and 104 Arabidopsis negative controls. Information sources: NCBI Genbank Release 129.0, Refseq


title: MWG Mouse 10K B Array

description: Array of oligonucleotide probes covering 9850 mouse genes Including 27 Replicas and 107 Arabidopsis negative controls. Information sources: NCBI Genbank Release 129.0, Refseq


title: ZmDB Array Unigene-1-01-01

first: Paula

last: Casati

description: Maize Unigene I arrays fabricated by the Maize Gene Discovery Project contain 5664 ESTs (for more information, see http://gremlin3.zool.iastate.edu/zmdb/microarray/).  Within these arrays, the cDNA samples are printed three times next to each other; consequently, average signal intensities and the ratio between co-hybridized samples could be assessed multiple times within each microarray and within experiments.  These arrays contain cDNAs recovered from libraries of mixed adult tissues (707 and 945), mixed stages of embryo development (687), and salt-stressed roots (603).


title: MWG Chromosome 21 Array

description: The MWG Chromosome 21 Array consists of 498 specific gene sequences and contains all genes known for chromosome 21, as well as additional gene sequences whose location is supposed to be on that chromosome. A cooperation with the Max Planck Institute for Molecular Genetics in Berlin around this new DNA chip confirmed the superiority of MWG Biotech's oligonucleotide DNA chip design applied in the MWG Array Series. Information Sources: MPI Berlin, Molecular Genetics, http://rzpd.de/general/html/Chrom21/


title: MWG Human 10k Array C

description: Array of oligonucleotide probes covering third set of 29550 total human genes including 30 Replicas and 104 Arabidopsis controls (MWG Human 30k Array consists of 3 slides (Arrays A, B, C) and contains oligonucleotide probes covering 29550 human genes including 90 Replicas and 312 Arabidopsis controls).


title: MWG Streptococcus pneumoniae Array

organism: Streptococcus pneumoniae

description: The MWG S. pneumoniae Array contains 2018 oligonucleotide probes covering the whole S. pneumoniae transcriptome.


title: MWG Human 10k Array B

description: Array of oligonucleotide probes covering second set of 29550 total human genes including 30 Replicas and 104 Arabidopsis controls (MWG Human 30k Array consists of 3 slides (Arrays A, B, C) and contains oligonucleotide probes covering 29550 human genes including 90 Replicas and 312 Arabidopsis controls).


title: UCSF printing s3p7

status: Public on Aug 29 2003

first: Dennis

last: Wykoff

department: Biochemistry

institute: UCSF

description: cDNA printing s3p7 from UCSF

first: Mike

last: Springer

first: Erin

last: O'Shea

first: Nicole

last: Miller


title: MWG Campylobacter jejuni Array

organism: Campylobacter jejuni

description: The MWG C. jejuni Array contains 1632 oligonucleotide probes covering the whole C. jejuni transcriptome.


title: UCSF printing s3p3

description: Yeast cDNA printing from UCSF s3p3


title: BOTL3 7_18_03

status: Public on Jul 22 2003

city: East Lansing

first: Steven

middle: Paul

last: Suchyta

state: MI

address: B215 Anthony Hall

department: Animal Science

institute: Michigan State University

organism: Bos taurus

description:
Bovine Total Leukocyte cDNA microarray
Third Generation Microarray
Keywords = microarray, cDNA, bovine

first: Jianbo

last: Yao

first: Sally

middle: A

last: Madsen

first: Jeanne

last: Burton

first: Paul

middle: M

last: Coussens


title: MWG Helicobacter pylori Array

last: MWG Biotech

organism: Helicobacter pylori

description: 1877 genes from both H. pylori strains J99 and 26695- one oligonucleotide per gene.


title: yeast ORF chip

description: yeast ORF chip


title: Incyte Unigem 1.31

status: Public on Aug 27 2003

city: Cincinnati

first: Lara

last: Gawenis

institute: University of Cincinnati College of Medicine

organism: Mus musculus

description: The Incyte Unigem1.31 contains 9,500 mouse clones.  The PCR amplified DNA inserts were purified and mechanically spotted onto the array chip by Incyte Genomics.


title: MWG Human 10k Array A

organism: Homo sapiens

description: Array of oligonucleotide probes covering first set of 29550 total human genes including 30 Replicas and 104 Arabidopsis controls (MWG Human 30k Array consists of 3 slides (Arrays A, B, C) and contains oligonucleotide probes covering 29550 human genes including 90 Replicas and 312 Arabidopsis controls).


title: Kennedy-Krieger Drosophila array

status: Public on Jul 14 2003

city: Baltimore

first: Shuli

last: Xia

state: MD

institute: Kennedy-Krieger Institute

organism: Drosophila melanogaster

description: Kennedy-Krieger Drosophila cDNA array

first: S

first: J

last: Yang

first: Y

last: Su

last: Qian

first: E

last: Ma

first: G

last: Haddad


title: H10K(Incyte Human Unigene 1)

status: Public on Jun 25 2003

city: Memphis

first: Deanna

middle: Cole

last: Naeve

state: TN

address: 332 N. Lauderdale

department: Hartwell Center for Bioinformatics and Biotechnology

institute: St. Jude Children's Research Hospital

description: The H10K microarray includes 9182 cDNA human clones from the Incyte Human Unigene 1 collection.  The cDNA inserts were amplified from replica plate cultures by PCR, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA).  Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.


title: M2(Incyte mouse release 1.0)

description: The M2 microarray includes 8,734 cDNA mouse clones from the Incyte mouse release 1.0 collection. The PCR amplified cDNA inserts were either obtained from Incyte or were amplified from replica plate cultures, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA).  Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.


title: Human 18K set (8.13.2001)

status: Public on May 21 2003

first: Andrei

last: Mikheev

address: 1100 Fairview Ave. N.

department: Human Biology

institute: Fred Hutchinson Cancer Research Center

description:
Human 18K set created on 08/13/2001
Keywords = Hela, transformation

first: Helmut

last: Zarbl


title: M4(Incyte mouse Unigene1)

description: The M4 microarray includes 9,596 cDNA mouse clones from the Incyte mouse Unigene 1 collection. The PCR amplified cDNA inserts were either obtained from Incyte or were amplified from replica plate cultures, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA).  Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.


title: M3 (NIA Mouse 15K Clone Set)

status: Public on May 15 2003

description: The M3 microarray includes cDNAs from the NIA Mouse 15K cDNA clone collection.  NIA Mouse 15K is derived from several early embryonic cDNA libraries, including blastocyst, preimplantation, embryonic stem cells, trophoblast stem cells, embryonic germ cells, and others.  The cDNA inserts were amplified from replica plate cultures by PCR, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA).  Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.


title: LGTCmuOLIs1

status: Public on Sep 12 2003

city: Leiden

first: Rolf

last: Turk

address: Wassenaarseweg 72

department: Center for Human and Clinical Genetics

country: Netherlands

institute: Leiden University Medical Center

description: Oligonucleotide arrays based upon the SigmaGenosys murine oligonucleotide collection spotted on home made polylysine slides by the Leiden Genome Technology Center (www.lgtc.nl)


title: H1 (Incyte Human Unigene 1)

description: The H1 microarray includes 9182 cDNA human clones from the Incyte Human Unigene 1 collection.  The cDNA inserts were amplified from replica plate cultures by PCR, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA).  Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.


title: Buchnera (Sg) Sigma Slide

status: Public on Mar 14 2003

city: Tucson

first: Jennifer

last: Wilcox

state: AZ

department: EEB

institute: University of Arizona

organism: Buchnera aphidicola (Schizaphis graminum)

description:
Spot ID Numbers for Buchnera (Schizaphis graminum) DNA microarray.
SigmaScreen slides were stamped on 12 Nov 2001.
Keywords = aphid endosymbiont

first: Nancy

last: Moran

first: Helen

last: Dunbar


title: M20K (Incyte mouse release 1.0 and Unigene1)

description: The M20K microarray includes 18,330 cDNA mouse clones from the Incyte mouse release 1.0 and Unigene 1 collections. The PCR amplified cDNA inserts were either obtained from Incyte or were amplified from replica plate cultures, purified and mechanically spotted onto polylysine-coated microscope slides using an OmniGrid robotic spotter (GeneMachines, San Carlo, CA).  Printed slides were post-processed according to the procedures on the Stanford website with some modifications: http://cmgm.stanford.edu/pbrown/protocols/index.html.


title: NBFGC_1

status: Public on Apr 24 2003

first: Steven

last: Suchyta

description:
National Bovine Functional Genomics Consortium microarray version 1
Keywords = bovine microarray EST cDNA

first: Sue

last: Sipkovsky


title: Eucalyptus xylem microarray (NCSU)

status: Public on Jun 30 2003

city: Gainesville

first: Matias

last: Kirst

state: FL

institute: University of Florida

organism:
Eucalyptus grandis
Eucalyptus tereticornis

description:
The cDNA microarray comprises 2608 ESTs, printed in duplicate. Each cDNA has been printed by Pin 1 and 4, or by Pin 2 and 3. 555 ESTs represent the UniGene set derived from the sequencing of a cDNA library from Eucalyptus grandis differentiating xylem generated by the Forest Biotechnology Group at NCSU (egx prefix). The remaining 2053 ESTs are from four libraries from Eucalyptus grandis leaf and root tissue and two libraries from Eucalyptus tereticornis flower tissues, kindly made available by DuPont (Scott Tingey, DuPont Crop Genetics, Newark, DE). These ESTs were selected from a collection of approximately 13,000 sequences, based on their putative function in the biogenesis of cell walls, biogenesis of the cytoskeleton, biosynthesis of phenylpropanoids, protein targeting, c-compound and carbohydrate metabolism, cell growth, signal transduction, protein transport, energy metabolism and other functions potentially associated to wood formation. The cDNA clones were amplified by PCR, purified (Millipore 96-well Multiscreen filter plates) and the quality of the amplification evaluated using agarose gels. Preparations with multiple bands and low quality amplified cDNAs were eliminated and repeated. After dilution in 50% DMSO, cDNAs were printed in duplicate on aminosilane-coated glass slides (Corning) using an Affymetrix 417 Spotter.
Keywords = Eucalyptus xylem

first: Alexander

last: Myburg

first: Ron

last: Sederoff


title: Sigma Genosys Panorama Human Cytokine Gene Array

status: Public on Dec 20 2002

city: The Woodlands

last: Sigma-Genosys

state: TX

address: 1442 Lake Front Circle

institute: Sigma-Genosys

description: The Panorama Human Cytokine Gene Array is a comprehensive collection of arrayed genes encoding cytokines, chemokines, their receptors and other related immunoregulatory factors.  The array consists of 375 cytokine and immuno-regulatory genes that are spotted in duplicate onto a positively charged nylon membrane. Each spot consists of 10 ng of PCR-amplified coding sequence derived from sequence-verified human cDNA clones. The gene arrays are 12 x 8 cm in size.


title: Silver-Church Harvard S. cerevisiae cDNA ORF array

status: Public on Nov 25 2002

city: Boston

first: Haley

last: Hieronymus

state: MA

address: 1 Jimmy Fund Way SM922

institute: Harvard Medical School and Dana-Farber Cancer Institute

organism: Saccharomyces cerevisiae

description: Full-genome cDNA array of all S. cerevisiae ORFs made by the Church lab and used by the Silver lab at Harvard Medical School

first: Pamela

last: Silver


title: Genes significantly modified in Gestational Diabetes

status: Public on Apr 30 2003

first: Sylvie

last: Hauguel-de Mouzon

address: 24 rue de Chaligny

department: Hopital Saint Antoine

institute: Universite Paris6

description: List of the significantly up- and down-regulated genes in the diabetic placentas.

first: Tatjana

last: Radaelli

first: Ali

last: Varastehpour

first: Patrick

last: Catalano


title: NIA_Mouse_15K_Array

status: Public on Jan 29 2003

first: Vincent

last: VanBuren

address: 333 Cassell Drive - Suite 3000

department: Laboratory of Genetics

institute: NIH / NIA

description:
The NIA_Mouse_15K_Array platform is composed of cDNAs from the NIA Mouse 15K cDNA clone collection, thereby allowing easy retrieval of clones that yield interesting array results. NIA Mouse 15K is derived from several early embryonic cDNA libraries, including blastocyst, preimplantation, embryonic stem cells, trophoblast stem cells, embryonic germ cells, and others.

This platform information was designed to allow submissions for any array based on the NIA Mouse 15K cDNA clone set. IDs for this platform are the same as clone IDs in the NIA collection.
Keywords = embryo stem preimplantation trophoblast blastocyst germ osteoblast


title: TcARRAY_001

status: Public on Nov 12 2002

city: Athens

first: Todd

last: Minning

state: GA

address: Rm 310 Coverdell

department: CTEGD

institute: University of Georgia

organism: Trypanosoma cruzi

description:
Arrays of amino-modified PCR products from Trypanosoma cruzi GSS and ORF library sequences printed on a "homemade" printer using 4 pins.  Arrays were printed on aldehyde derivatized glass slides.
Keywords = T. cruzi, GSS, ORF

first: Jacqueline

last: Bua

first: Gabriela

last: Garcia

first: Royal

last: McGraw

first: Rick

last: Tarleton


title: ZmDB 606-Immature Ear Microarray (2 cm)

status: Public on Aug 04 2003

city: Rosario

first: Paula

last: Casati

institute: Universidad Nacional de Rosario

description: The 606 Ear Tissue Microarrays are composed of eight subarrays arranged in 4 rows and 2 columns. Each of the 8 subarrays is composed of a 45 x 45 matrix of spots printed at a spacing of 195 um with a 250 um gap between subarrays. Each DNA element on the slide can be located by knowing the Subarray Row and Subarray Column and the Row and Column within the subarray where the element is printed. ESTs can be identified by Stanford Id (number based on the EST project/plate/and platewell where EST is located) and by GenBank Accession Number. Control sequences have sequence names and descriptors in place of Stanford ID and GenBank Accession Number. For more information about the format of the 606 Microarrays visit the information button on the Microarray Elements Search page (http://www.zmdb.iastate.edu/zmdb/microarray/data.html).


title: Sigma Genosys Panorama Mouse Apoptosis Gene Array

description: The Panorama Mouse Apoptosis Gene Array is comprised of 243 genes, selected on the basis of their participation in the apoptotic process.  Each gene is represented as duplicate spots in the array. Each spot consists of 10 ng of PCR-amplified DNA derived from sequence verified cDNA clones. The genes are arrayed on positively charged nylon membranes that are 12 cm x 8 cm in size.


title: Sigma Genosys Panorama Human Apoptosis Gene Array

description: The Panorama Human Apoptosis Array is a membrane-based macro-array consisting of cDNAs from 198 genes carefully selected from the latest literature on the basis of their direct involvement in the apoptotic process. 10 ng of PCR-amplified DNA up to 1 kb in length representing each gene is spotted in duplicate on positively charged nylon membranes. The spots are spaced 1.5 mm apart and 2 mm diagonally.


title: Pf_proteomic

status: Public on Dec 23 2002

first: Laurence

last: Florens

state: CA

address: SR-11, 10550 North Torrey Pines Road

department: Department of Cell Biology

institute: The Scripps Research Institute

organism: Plasmodium falciparum 3D7

technology: MS

description:
Virtual platform describing proteins identified during analysis of Plasmodium falciparum life cycle.
Proteomes analyzed by multidimensional protein identification technology (MudPIT), which combines in-line, high-resolution liquid chromatography and tandem mass spectrometry. Two levels of control were implemented to differentiate parasite from host proteins. By using combined host-parasite sequence databases and noninfected controls, 2,417 parasite proteins were confidently identified out of thousands of host proteins.

distribution: virtual

first: L

first: M

last: Washburn

first: J

last: Raine

first: R

last: Anthony

last: Grainger

last: Haynes

middle: K

last: Moch

first: N

last: Muster

middle: B

last: Sacci

first: D

last: Tabb

first: A

last: Witney

last: Wolters

first: Y

last: Wu

middle: J

last: Gardner

last: Holder

last: Sinden

last: Yates

last: Carucci


title: TcARRAY_002

last: Minning

description:
Arrays of amino-modified PCR products from Trypanosoma cruzi GSS and ORF sequences printed using a "homemade" arrayer with 16 pins.  Arrays were printed on aldehyde derivatized glass slides.
Keywords = T. cruzi, GSS, ORF

last: Bua

last: Garcia

last: McGraw

last: Tarleton


title: y80print2

status: Public on Feb 12 2002

city: Stanford

last: Stanford Microarray Database

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

institute: Stanford Microarray Database (SMD)

description:
Tip Configuration: Standard 4-tip
Columns per Sector: 48
Column Spacing: 175
Row Spacing: 175


title: y74

description:
Tip Configuration: Standard 4-tip
Columns per Sector: 43
Column Spacing: 175
Row Spacing: 175


title: Atlas Select Human Tumor Array (Cat. #7830-1)

status: Public on Oct 01 2002

city: Palo Alto

last: BD Biosciences Clontech

address: 1020 East Meadow Circle

institute: BD Biosciences Clontech

description: Designed for studying tumor suppressor genes, markers for a specific tumor type, or the processes of tumorigenesis in a system of interest. The array contains genes differentially expressed in liver, lung, prostate, breast, and bladder tumors.


title: Sigma Genosys Panorama Mouse Cytokine Gene Array

last: Sigma-Genosys

description: The Panorama Mouse Cytokine Gene Array is a comprehensive collection of arrayed genes encoding cytokines, chemokines, their receptors and other related immunoregulatory factors.  The array has 514 mouse cDNAs amplified from within the protein-coding regions of the genes. 10 ng of PCR-amplified DNA derived from sequence verified cDNA clones are represented as duplicate gene spots in the array. The genes are arrayed on positively charged nylon membranes that are 12 x 8 cm in size.


title: y744-empties

description:
Tip Configuration: Standard 4-tip
Columns per Sector: 44
Column Spacing: 135
Row Spacing: 135