title: Amersham CodeLink UniSet Mouse 20K I Bioarray

status: Public on Jan 01 2005

city: Kyoto

first: Shigekazu

last: Nagata

address: Yoshida. Sakyo-ku

department: Department of Medical Chemistry

country: Japan

institute: Graduate School of Medicine, Kyoto University

organism: Mus musculus

technology: spotted DNA/cDNA

description: CodeLink UniSet Mouse 20K I Bioarray targets ~20 000 unique, well-annotated mouse genes

distribution: non-commercial


status: Public on Mar 11 2004

city: Louisville

first: Thomas

middle: B

last: Knudsen

state: KY

address: 501 S Preston St

department: Birth Defects Center

country: USA

institute: University of Louisville

description:
Developmental Toxicity of the Mouse Embryo (DTME) includes expression data from early embryos at risk for teratogen-induced eye malformations. Early mouse embryos were exposed to various teratogens during neurulation stages with the aim of correlating large-scale changes in gene expression with a generic histopathological biomarker (p53 protein induction) across the critical period during exposure, and with the risk of malformations in term fetuses (the various exposure scenarios produce ~10% risk of malformations in term fetuses averaged across 50 conditions of the experiment). Microarray analysis was performed on RNA from the embryo, prosencephalon, or headfold. Each condition for microarray analysis was replicated with independent sampling and reversal of labeling assignments (100 samples total). DTME compares genes expressed between test vs. reference samples as evidenced by data from two-channel MICROMAX system from PerkinElmer Life Sciences (Wellesley, MA 02481-4078, USA). It also includes a series of comparisons of early optic development in the optic primordium from mouse and rat embryos harvested at equivalent morphogenetic stages. The microarray platform uses a novel integrative chemistry that culminates massive signal amplification and greatly enhanced detection. The method incorporates unique two-channel indirect labeling of target RNA products with biotinyl-11-dCTP and fluorescein-12-dCTP (or dinitrophenol-11-dCTP) with post-hybridization amplification through conventional immunodetection and tyramide signal amplification. The probe was spotted with 2.4K sequence-verified human gene elements (single or duplicate) from 50 different cDNA libraries and positive- and negative- control genes. The cDNAs represent more than 10 different tissue sources: 80% brain-derived and more than 40% full-length cDNA sequences and a range of human diseases, metabolic, and regulatory pathways. The probe has been shown effective with target RNA from human, mouse, or rat biosources. The dataset includes "absolute" and "relative" values. Absolute values represent the background-corrected signal. For single-spot 2400 arrays this means one measurement for every spotted element and each color channel. Relative values represent ratiometric data normalized as follows: transformation to log2-space; lowess correction of MxA plot; internal standardization by mean absolute deviation; and normalization between replica pairs in each condition.
Keywords = mouse
Keywords = embryo
Keywords = teratogen
Keywords = toxicity
Keywords = development
Keywords = eye

distribution: custom-commercial

first: Kimberly

middle: R

last: Nemeth

first: Amar

middle: V

last: Singh

first: Jeffrey

middle: H

last: Charlap


title: ecoli_4.3

status: Public on Jul 30 2001

city: Stanford

last: Stanford Microarray Database

state: CA

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

institute: Stanford Microarray Database (SMD)

organism: Escherichia coli

description:
A microarray with 4896 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 18
Rows per Sector: 17
Column Spacing: 173
Row Spacing: 173


title: Human oligo array part I LGTC

status: Public on Feb 12 2004

city: Leiden

first: Ellen

last: Sterrenburg

address: Wassenaarseweg 72

department: Center for Human and Clinical Genetics

country: Netherlands

institute: Leiden University Medical Center

organism: Homo sapiens

technology: spotted oligonucleotide

description: Human oligonucleotide array part I printed by the Leiden Genome Technology Center. Contains 10800 60-mer oligonucleotides from Sigma-Genosys Human oligonucleotide library, release 1.


title: Mouse 13.4K long oligonucleotide array (Operon) 9.10.2002v2

status: Public on May 15 2004

city: Malmö

first: Harry

last: Björkbacka

address: CRC 91:12, UMAS entrance 72

department: Dept. of Clinical Sciences, Malmö

country: Sweden

institute: Lund University

description:
The Operon version 1.1 oligonucleotide probe set (70-mers) was printed in the Massachusetts General Hospital microarray core facility using an OmniGrid 100 (GeneMachines) on CodeLink activated slides (Amersham).
Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine.
Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber.
Unreacted groups on the slide surface were blocked with 150 mM glycine, 0.1 M tris, 0.1% N-lauroyl sarcosine, pH 9.
Keywords = spotted, long oligonucleotide, Operon

first: Glenn

middle: F

last: Short

first: Jocelyn

last: Burke

first: Najib

last: El Messadi

first: Jing

last: Wang

last: Bjorkbacka


title: 10k_print2

status: Public on Jun 27 2002

description:
A microarray with 9984 spot features.
Tip Configuration: Standard 4-tip
Columns per Sector: 51
Rows per Sector: 49
Column Spacing: 200
Row Spacing: 200


title: Arcturus 22k human oligonucleotide microarray

status: Public on Jun 07 2004

city: Carlsbad

first: Xiao-Jun

last: Ma

address: 2715 Loker Ave. W.

institute: AviaraDx, Inc.

description:
60mer oligonucleotide array custom-designed by Arcturus and fabricated by Agilent using inkjet in situ synthesis technology.
Included 21901 probes based on the human UniGene database.
Keywords = Arcturus, long oligonucleotide array, Agilent


title: UHN Microarray Centre - Human 19K 3 (Part A)

status: Public on Dec 07 2003

city: Ottawa

first: Felix

middle: M.

last: Mesak

state: ON

address: 503 Smyth Rd. 3rd Floor

department: Centre for Cancer Therapeutics

country: Canada

institute: Ottawa Regional Cancer Centre

description:
cDNA microarrays are printed on CMT-GAPS slides (Corning Inc.) using high precision robotics. Contains 19008 characterized and unknown human ESTs. The 19k array is split over a pair of slides (Part A and Part B). Each EST was spotted in duplicate. This platform is the 19k array version 3 Part A. The cDNA microarray can be purchased at University Health Network (UHN) Microarray Centre, Ontario Cancer Institute (OCI), Toronto, Canada [ http://www.microarrays.ca ].
Keywords = cDNA microarray, ESTs

middle: M

first: Cheng

middle: E

last: Ng


title: Research Genetics (Invitrogen) - GF211 Microarray Filter

status: Public on Oct 10 2003

last: ResGen/Invitrogen Corporation

institute: ResGen/Invitrogen Corporation

description: Research Genetics GF 200 nylon membrane containing 4,132 spotted cDNA clones

distribution: commercial

manufacture_protocol: see manufacturer's web site


title: UHN Microarray Centre - Human 19K 3 (Part B)

description:
cDNA microarrays are printed on CMT-GAPS slides (Corning Inc.) using high precision robotics. Contains 19008 characterized and unknown human ESTs. The 19k array is split over a pair of slides (Part A and Part B). Each EST was spotted in duplicate. This platform is the 19k array version 3 Part B. The cDNA microarray can be purchased at University Health Network (UHN) Microarray Centre, Ontario Cancer Institute (OCI), Toronto, Canada [ http://www.microarrays.ca ].
Keywords = cDNA microarray, ESTs


status: Public on Nov 24 2004

city: Boston

first: Nathaniel

last: Treister

state: MA

address: 20 Staniford Street

institute: Schepens Eye Research Institute

description: Amersham CodeLink UniSet Mouse I Bioarray contains single-stranded oligonucleotide probes derived from a large majority of publicly available, well-annotated mRNA sequences found in the Mouse UniGene set of unique clusters. Each bioarray contains probes for an independent assay of all 10,000 genes in the set.  This microarray is available from Amersham. Catalog number 300013


title: Agilent_AS_Experiment

status: Public on Nov 22 2004

city: Los Angeles

first: Christopher

last: Lee

department: Dept. of Chemistry & Biochemistry

institute: University of California, Los Angeles

technology: in situ oligonucleotide

description:
The array contains 60-mer (including the poly-T) oligonucleotide probes. Submitted for Nucleic Acids Research Methods online publication.
Keywords = Alternative Splicing
Keywords = Agilent

first: Keith

last: Le

first: Katherine

last: Mitsouras

first: Meenakshi

last: Roy

first: Qi

first: Qiang

last: Xu

first: Stanley

last: Nelson


title: NBFGC cDNA microarray

status: Public on May 21 2003

city: East Lansing

first: Steven

middle: Paul

last: Suchyta

state: MI

address: B215 Anthony Hall

department: Animal Science

institute: Michigan State University

organism: Bos taurus

description:
National Bovine Functional Genomics Consortium cDNA microarray.
Keywords = cDNA, microarray, bovine

middle: P

first: Paul

last: Coussens


title: Mouse NIA 15K Custom

status: Public on May 05 2004

city: Tucson

first: Heddwen

last: Brooks

state: AZ

address: 1501 N Campbell Ave

department: Physiology

institute: University of Arizona

description:
Custom array including the NIA Mouse 15K Cloneset plus addition unidentified clones
Keywords = Mouse NIA 15K Arizona

first: Kevin

middle: A

last: Greer


title: Human oligo array part II LGTC

first: Ellen

last: Sterrenburg

description: Human oligonucleotide array part II printed by the Leiden Genome Technology Center. Contains 10800 60-mer oligonucleotides from Sigma-Genosys Human oligonucleotide library, release 1.


title: SVA

last: Stanford Microarray Database

description:
A microarray with 6720 spot features.
Tip Configuration: Standard 4-tip
Columns per Sector: 42
Rows per Sector: 40
Column Spacing: 157
Row Spacing: 157


title: Nuclear Chloroplast Transcriptome GST Macroarray

status: Public on May 12 2005

city: Chicago

first: christos

last: Noutsos

country: Germany

institute: University of Chicago

organism: Arabidopsis thaliana

description:
This array mainly consists of GSTs for proteins which have been predicted (by TargetP) to be targeted to the chloroplast.
Also, some additional GSTs of non-chloroplast proteins (e.g. mitochondrial) have been included.
For more information on the array, please refer to the following two publications:
1) Kurth et al: Gene-sequence-tag expression analyses of 1,800 genes related to chloroplast functions. Planta. 2002 May;215(1):101-9, PMID: 12012246
2) Richly et al: Covariations in the nuclear chloroplast transcriptome reveal a regulatory master-switch. EMBO Rep. 2003 May;4(5):491-8, PMID: 12776738
Keywords = nuclear chloroplast transcriptome GST

first: Erik

last: Richly

first: Joachim

last: Kurth

first: Claudio

last: Varotto

first: Dario

last: Leister


title: RICE oligo microarray ver1

status: Public on Jan 28 2004

city: Tsukuba

first: Junshi

last: Yazaki

state: Ibaraki

address: 2-1-2 Kan-nondai

department: Molecular Genetics

institute: National Institute of Agrobiological Sciences

organism: Oryza sativa

description:
On the basis of the collection, mapping and annotation of over 28,000 full-length cDNA clones from japonica rice(Science Jul 18 2003: 376-379), we have constructed a monitoring system that uses the sequence information of the full-length cDNA clones as a 60mer-single stranded oligonucleotide format. Probes on the array (ca 22,000) cover the whole transcription units corresponding to 28K full-length cDNA clones
Keywords = Rice
Keywords = Plant
Keywords = monocotyledons
Keywords = full-length cDNA
Keywords = 60mer oligonucleotide
Keywords = NIAS

first: Zenpei

last: Shimatani

first: Akiko

last: Hashimoto

first: Yuko

last: Nagata

first: Keiichi

last: Kojima

first: Kouji

last: Suzuki

first: Yasuhiro

last: Otomo

first: Kazuo

last: Murakami

first: Kenichi

last: Matsubara

first: Jun

last: Kawai

first: Piero

last: Carninci

first: Yoshihide

last: Hayashizaki

first: Shoshi

last: Kikuchi


title: Yeast Splicing Chip v3.0

status: Public on Apr 02 2002

city: Santa Cruz

first: Manuel

last: Ares

institute: UC Santa Cruz

organism: Saccharomyces cerevisiae

description:
This is an oligonucleotide microarray designed to measure splicing in yeast.  Each intron containing gene has 3 features (Splice Junction, Intron, Exon2).  The SJ oligo symmetrically spans the splice junction with 20nt on each side.  All oligos are custom designed 40-mers.  The array contains 864 unique elements that are each printed four times.
Keywords = Splicing

first: Tyson

last: Clark

first: Charles

middle: W

last: Sugnet


title: MWG Rat 5K Array

status: Public on Sep 23 2003

city: High Point

last: MWG Biotech

state: NC

address: 4170 Mendenhall Oaks Parkway, Suite 160

institute: MWG Biotech

organism: Rattus norvegicus

description:
The MWG Rat 5k Array is comprised of 5760 50-mer oligonucleotides, representing 5,535 rat genes, spotted onto one glass array. The selected genes cover all non-redundant, annotated rat coding sequences in NCBI's GenBank (release 123.0).
Keywords = spotted
Keywords = oligonucleotide
Keywords = rat


title: OMRF Microarray Core Facility Human Print 9/30/03

status: Public on Feb 23 2005

city: Oklahoma City

first: Stewart

middle: Alan

last: Shields

state: OK

address: 825 NE 13th St

department: Arthritis/Immunology

institute: Oklahoma Medical Research Foundation

description: OMRF human oligonucleotide print map 9/30/03

first: Mark

last: Frank

first: Craig

last: Cadwell

first: Michael

last: Centola

first: Igor

last: Dozmorov


title: MIT-Laboratory for Bioinformatics and Metabolic Engineering, 17K Mouse Arrays

status: Public on Apr 14 2003

city: Cambridge

first: R.

middle: Michael

last: Raab

address: 77 Massachusetts Avenue

department: Chemical Engineering

institute: Massachusetts Institute of Technology

description:
Total RNA samples are generally isolated using either STAT60
or Qiagen's QIAquick Total RNA mini-kit.

Total RNA control samples are labelled using Cy3 dCTP (Perkin-Elmer), and
total RNA experimental samples were labelled using Cy5 dCTP (Perkin-
Elmer) during reverse transcription. For reverse transcription 10 ug of total
RNA was mixed with 2 uL of 10X Cy-labelled dCTP, 2 uL of 100 mM DTT
(Invitrogen), 4 uL of 5X First Strand Buffer (Invitrogen), 2 uL of a dNTP
mixture containing 5 mM dGTP, dATP, dTTP and 2 mM dCTP (Invitrogen),
2 uL of 0.5 mg/ mL oligo-dT18-20 (Invitrogen), and 2 uL of Superscript II
reverse transcriptase (Invitrogen). The control RNA samples were additionally
mixed with 2 uL of random hexamers. The reaction mixtures were incubated
at 42 C for two hours. After the reverse transcription reactions, the RNA
templates were degraded by addition of 2 uL of 1 N NaOH and incubation at
65 C for 10 minutes. The alkaline conditions were neutralized by addition of
2 uL of 1 N HCl. Experimental cDNA samples were then mixed with a control
cDNA sample, and the mixtures were cleaned using a QIAquick Nucleotide Removal
kit (Qiagen) as described by the manufacturer's instructions. The cleaned
samples were concentrated in a speed vacufuge (Eppendorf) for 20 minutes at
65 C, and were dissolved in 32 uL of prewarmed hybridization buffer (Clontech
Laboratories), quantified, and hybridized to prepared oligonucleotide
microarrays.

Hybridization occurred overnight at 55 C using Corning
hybridization chambers. The following day the arrays were washed in Glass
Hybridization Wash Solution (Clontech Laboratories), then in 1X SSC, and
finally in 0.1X SSC. The arrays were dried by centrifugation and scanned
using a GenePix 4000B scanner (Axon Instruments). The resulting data is
downloaded and formatted in Excel (Microsoft), and analyzed using Matlab
(The MathWorks, Inc.).

These microarrays were prepared using GAPS glass slides (Corning), and a
Virtek arrayer (Bio-Rad). Arrays contained 17,280 features, printed from
a synthesized oligonucleotide mouse library (Operon). The library was
suspended in 3X SSC, centrifuged, and loaded into the arrayer. Arrays were
printed at approximately 50% humidity. Once printed, the probes were
crosslinked using a UV Stratalinker (Stratagene). The slides were then
blocked for 15 minutes in a 250 mL mixture containing 15.7 g/ L succinic
anhydride (Fluka AG), 239 mL 1-methyl-2-pyrrolidinone (EM Science), and
10.7 mL of 1 M boric acid (Fisher), pH 8.0. They were cleaned by
rinsing twice in 250 mL of milli-Q water, followed by 250 mL of 95% ethanol
(Pharmco Products). After blocking, they were dried using filtered air
and stored in the dark at room temperature.

ARRAY VALIDATION. Microarray printing and hybridization protocols
were validated in our laboratory. For validation, we prepared arrays
containing an approximately 13,000 gene sub-set of our oligonucleotide
mouse library, printed in triplicate. Total RNA from fetal skeletal muscle
and fetal brain were used for validation. Each sample contained an equal
amount of RNA from the two sources. Validation experiments compared muscle
RNA versus muscle RNA and brain RNA versus muscle RNA. Each sample was prepared as
described above and conducted in duplicate.
The arrays were processed, scanned, and the data obtained from the
image files. Matlab was used to calculate basic statistics.
The analysis required as input the gene identifiers from the Genepix
(scanner) data output, the ratios of means of the Cy5/Cy3 pixel fluorescence
corresponding to each gene identifier, the ratio of means normalization factor
(used to correct for the difference in fluorescence and incorporation of the
Cy5 and Cy3 fluorophores), and the adjusted flags corresponding to each
gene identifier. The adjusted flags marked features that either did not possess
basic fluorescence requirements sought by the imaging software or had
less than 60% of their pixels' intensities greater than two standard deviations
of the background intensity over the background intensity. Using these data
as input, Matlab returned the gene identifier, the mean of replicate spots that
were not flagged by our filters, the standard deviation of the unflagged
replicates, the coefficient of variation among replicates, and the number of
observations used in calculating the statistics for each gene.
The coefficient of variation, CV, was calculated for each replicated gene expression.
For the muscle versus muscle control arrays, the median CV across all
probes was 10.2%. For the muscle versus brain arrays the median coefficient
of variation across all probes was 9.8%. This indicates that for a gene
transcription ratio of 1, we might expect the true value to lie between 0.9 and
1.1; similarly for a gene transcription ratio of 3, we might expect the true
value to lie between 2.7 and 3.3.
In duplicate arrays, 76% of the genes observed on one muscle versus muscle
array were also observed on the duplicate; likewise 77% of the genes found
on one muscle versus brain array were conserved on the duplicate. These data
demonstrate the inter-array reproducibility by showing the majority of genes
are reproducibly found in multiple replicate arrays.
Keywords = mouse, dna microarrays, diabetes, hepatoma, hepatocytes, liver, muscle, adipose, hypothalamus

first: R. Michael

first: Jatin

last: Misra

first: Ilias

last: Alevizos

first: Gregory

last: Stephanopoulos


title: CodeLink Human 20K ver4.1

status: Public on Apr 01 2005

city: Hiroshima

first: Keiko

last: Hiyama

state: Hiroshima

address: 1-2-3 Kasumi, Minami-ku

department: Research Institute for Radiation Biology and Medicine

institute: Hiroshima University

description:
Commercially available CodeLink UniSet Human 20K I Bioarray with 19981 human probes, 108 positive bacterial controls, and 300 negative bacterial controls. Annotation: Jul/31/2004.

Keywords = CodeLink Human 20K

first: Tatsushi

last: Shimokuni

first: Eiso

first: Keiji

last: Tanimoto

first: Masahiko

last: Nishiyama


title: Fundulus_192gene_metabolic_array

status: Public on Feb 18 2005

city: Miami

first: andrew

last: whitehead

state: FL

institute: University of Miami, RSMAS

organism: Fundulus heteroclitus

description:
Microarrays were printed using 192 cDNAs from a F. heteroclitus cardiac library encoding essential proteins for cellular metabolism.  These cDNAs were a subset of over 33,000 expressed sequences in our database, which all may be found at http://genomics.rsmas.miami.edu/funnybase/super_craw3/ (Oleksiak et al. 2001).  These 192 cDNAs were amplified with amine-linked primers and printed on 3-D Link Activated slides (Surmodics Inc., Eden Prairie, MN) using a SpotArray Enterprise piezoelectric microarray printer (PerkinElmer Life Sciences Inc., Boston, MA, USA) at Louisiana State University.  Slides were blocked following slide manufacturer protocols.  The suite of 192 amplified cDNAs was printed as a group in spatially separated replicates (6 replicates for 178 genes, and 4 replicates for 14 genes).  Four hybridization zones of these six replicate arrays were printed per slide, with each zone set separated by a hydrophobic barrier.
Keywords = Fundulus
Keywords = metabolism
Keywords = populations
Keywords = tissue-specific gene expression

first: Andrew

last: Whitehead

first: Douglas

middle: L

last: Crawford


title: RenLab ENCODE PCR tiling array

status: Public on Sep 21 2004

city: San Diego

first: Chunxu

last: Qu

department: Gene Regulation

institute: Ludwig Institute for Cancer Research

description:
24,537 non-repetitive sequences that are greater than 100 bps within the 44 ENCODE regions were PCR amplified.  All the purified PCR products in a total of 66 384-well plates were spoted on glass slide using a contact printer.  There are a total of 48 blocks, with 23 x 23 dimension in each array.
Keywords = ENCODE
Keywords = PCR tiling array
Keywords = Bing Ren

first: Tae Hoon

last: Kim

first: Leah

middle: O

last: Barrera

first: Sara

last: van Calcar

first: Bing

last: Ren


title: EcoliMG1655v1.0

status: Public on Sep 09 2004

city: Saint Paul

first: Kyeong Soo

last: Jeong

state: MN

institute: University of Minnesota

description:
Tip Configuration: Standard 16-tip
Columns per Sector: 20
Rows per Sector: 22


title: GeneMap Human CancerArray

status: Public on Jul 30 2004

city: Baltimore

last: Snyder

state: MD

address: 655 West Baltimore Street

department: Radiation Oncology Research Laboratory

institute: University of Maryland, Baltimore

description:
1152 cDNA cancer-related microarray chip manufactured by Genomic Solutions (Ann Arbor, MI).  Each element spotted in duplicate.
32, nine by nine patches.
Blank spots included on array for background correction
Lambda Q spots included on array for normalization


title: HUMAN UNIGENE SetI Part 1

status: Public on Dec 10 2004

city: Berlin

first: Ute

last: Ungethuem

department: Core Center for Functional Genome Research

institute: Charité University Hospital

description: 16128 clones of the HUMAN UNIGENE Set1

first: Henning

last: Witt


title: Potato 10k cDNA array version 2

status: Public on Mar 16 2005

city: Rockville

first: Li

last: Zheng

address: 9712 Medical Center Dr.

institute: The Institute for Genomic Research

organism: Solanum tuberosum

description:
Spotted PCR amplified cDNA array on glass.
This version 2 set includes PCR products amplified from 15264 potato EST clones.
Each PCR product is duplicated on the slide. The number of total spots including empty and controls is 32448.

first: Carol

middle: Robin

last: Buell


title: MSU-1

status: Public on Jul 20 2001

city: Stanford

last: Stanford Microarray Database

institute: Stanford Microarray Database (SMD)

description:
Tip Configuration: Standard 1-tip
Columns per Sector: 1
Rows per Sector: 1
Column Spacing: 1.1
Row Spacing: 1.1
Microarray containing 11,521 Arabidopsis expressed sequence tags, representing an estimated 7800 unique genes.

first: R

last: Schaffer

first: J

last: Landgraf

first: M

last: Accerbi

first: V

last: Simon

last: Larson

first: E

last: Wisman


title: NIEHS Yeast Array

status: Public on Jun 23 2004

city: Charlottesville

first: Tsuyoshi

last: Miyake

state: VA

address: 1300 Jefferson Park Ave.

department: Biochemistry & Molecular Genetics

institute: Univ. Virginia

description:
This array was developed in-house at NIEHS, and used for gene expression profiling experiments. A complete listing of the genes on this chip is available at the following Web site: http://dir.niehs.nih.gov/microarray/chips.htm
cDNA microarray chips were prepared according to DeRisi et al., 1996, Nat. Genet. 14, 457-460. The spotted cDNAs were derived from a collection of sequence-verified clones that covered the 3` end of the gene and ranged in size from 500 to 2000 base pairs (Research Genetics). M13 primers were used to amplify insert cDNAs from purified plasmid DNA in a 100 5l polymerase chain reaction (PCR) mixture. A sample of the PCR products (10 microliters) was separated on 2% agarose gels to ensure quality of the amplifications. The remaining PCR products were purified by ethanol precipitation, resuspended in ArrayIt buffer (Telechem, San Jose CA) and spotted onto poly-L-lysine-coated glass slides using a modified, robotic DNA arrayer (Beecher Instruments, Bethesda MD).


title: Chlamydomonas organellar genes

status: Public on Dec 31 2004

city: Kenosha

first: David

middle: C

last: Higgs

state: WI

address: 900 Wood Rd.

department: Biological Sciences

institute: University of Wisconsin-Parkside

organism: Chlamydomonas reinhardtii

description:
This array contains seventy-one gene probes from the Chlamydomonas reinhardtii chloroplast and mitochondrial genomes, and some nuclear genes. It was made at the Center for Gene Expression Profiling (CGEP) at the Boyce Thompson Institute for Plant Research. Gene probes are gene-specific PCR products spotted in triplicat onto GAPII slides using a BioRobotics Microgrid Pro arrayer.
Keywords = plastid
Keywords = photosynthesis
Keywords = algae

first: Brian

last: Erickson

middle: B

last: Stern


title: PBRC_GCF 18K HUM OLIGO

status: Public on Aug 24 2004

city: Baton Rouge

first: Robert

middle: A.

last: Koza

state: LA

department: Genomics Core Facility

institute: Pennington Biomedical Research Center

description:
Human Oligonucleotide (60 mer)probes designed by Compugen and manufactured by Sigma-Genosys were solublized in 45% DMSO and printed onto poly-L-lysine slides.  The library contains 18,861 oligos representing 17,260 unique genes.  Slides were printed using a Genomic Solutions (GeneMachine) OmniGrid equipped with Telechem SMP4 Stealth Micro Spotting pins.
Keywords = Human 18K oligonucleotide


title: S.cerevisiae microarray

status: Public on Sep 25 2004

city: Bangalore

first: Aparna

middle: Katoch

last: Sapra

state: Karnataka

address: C.V. Raman Avenue

department: Microbiology and Cell Biology

country: India

institute: Indian Institute of Science

description:
The microarray slides include spots corresponding to the full length sequence of the S.cerevisiae ORF and introns.
Keywords = Pre-mRNA splicing
Keywords = ORF
Keywords = intron
Keywords = time-course


title: HP_002

status: Public on Jul 25 2001

address: 300 Pasteur Drive

department: Stanford University, School of Medicine

organism: Helicobacter pylori

description:
A microarray with 4623 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 17
Rows per Sector: 17
Column Spacing: 240
Row Spacing: 240


title: MS1: M1K array

status: Public on May 17 2003

city: New York

first: Elisa

last: Wurmbach

state: NY

address: 1 Gustave L. Levy Place

department: Hematology/Oncology

institute: Mount Sinai School of Medicine

description: 956 clones, mostly from the NIA 15k library were spotted in triplicates

first: Javier

last: Gonzalez-Maeso

first: Tony

last: Yuen

first: Barbara

middle: J

last: Ebersole

first: Alena

last: Lira

first: Mingming

last: Zhou

first: Noelia

last: Weisstaub

first: Jay

last: Gingrich

first: Stuart

last: Sealfon


title: Porcine 1000 embryo gene array

status: Public on May 05 2004

city: Ames

first: Christopher

middle: K

last: Tuggle

state: IA

address: 2255 Kildee Hall

institute: Iowa State University

organism: Sus scrofa

description: Porcine cDNA microarray, containing 1021 genes selected for embryo expression. This platform includes the GenBank accession numbers, our clone ID, and gene name description for the 1021 genes.

first: S

middle: H

last: Lee

last: Zhao

first: J

last: Recknor

first: D

last: Nettleton

last: Kang

first: B

first: W

middle: S

last: Hwang

first: C


title: UCSF elegans_mod 19K array

status: Public on Jan 18 2004

city: San Francisco

first: Coleen

middle: T

last: Murphy

state: CA

department: Biochemistry Department

institute: University of California, San Francisco

organism: Caenorhabditis elegans

description: We used the Research Genetix primer pair set to create about 19 thousand PCR products, using C. elegans genomic DNA as template.  We printed these PCR products at high density on polylysine-coated glass slides, closely adhering to protocols available at http://microarrays.org.

first: Steven

last: McCarroll

first: Andrew

last: Dillin

first: Joshua

last: Lehrer-Graiwer


title: BPL_array_NIAS

status: Public on Nov 24 2004

city: Tsukuba City

first: Koichi

last: Ushizawa

address: Ikenodai 2

department: Animal Science Department

description:
BPL_array_NIAS platform of a spotted cDNA microarray has been established using a bovine utero-placenta cDNA library. The array has been fabricated collaboratively by Laboratory of Reproductive Biology and Technology at National Institute of Agrobiological Sciences, Tsukuba City, Japan and Department of Paediatric Pharmacology at National Institute of Child Health and Development, Tokyo, Japan.
Keywords = bovine utero-placenta
Keywords = cDNA array
Keywords = gene expression

first: Chandana

last: Herath

first: Hiroko

last: Ishiwata

first: Susumu

last: Katsuma

first: Keiichiro

last: Kizaki

first: Satoshi

last: Shiojima

first: Akira

last: Hirasawa

first: Toru

last: Takahashi

first: Kei

last: Imai

first: Yoshiaki

last: Izaike

first: Gozoh

last: Tsujimoto

first: Kazuyoshi

last: Hashizume


title: NCI cDNA array

status: Public on Jun 30 2004

city: Research Triangle Park

first: Jennifer

last: Fostel

institute: NIEHS

description: cDNA microarray used by NCI.  See Ross et al., Nat Genet. 2000 Mar;24(3):227-35; Scherf et al, Nat Genet. 2000 Mar;24(3):236-44

first: Uma

last: Shankavaram

first: John

middle: N

last: Weinstein


title: Pinus taeda cDNA microarray

status: Public on Mar 02 2004

city: Raleigh

first: Debbie

middle: Ross

last: Craig

address: 840 Main Campus Drive

department: Forestry

institute: North Carolina State University

organism: Pinus taeda

description: The microarray contains ESTs selected from 6 Xylem libraries: 1. NXCI - ESTs from juvenile compression wood of Pinus taeda (loblolly pine) 2. NXLV - ESTs from transitional/mature late wood of Pinus taeda (loblolly pine) 3. NXNV - ESTs from mature normal wood of Pinus taeda (loblolly pine) 4. NXPV - ESTs from transitional planings wood of Pinus taeda (loblolly pine) 5. NXRV - ESTs from root wood of Pinus taeda (loblolly pine) 6. NXSI - ESTs from juvenile side wood of Pinus taeda (loblolly pine) , a Pollen Cone library, and a Shoot tip library. The ESTs were PCR amplified, purified, denatured in 50% DMSO and printed on Corning GapsII amino-silane coated slides.

first: Monika

last: Brinker

first: Leonel

last: van Zyl

first: Wenbin

last: Liu

first: Deborah

first: Ron

middle: R

last: Sederoff

first: David

last: Clapham

first: Sara

last: von Arnold


title: Segal_3

status: Public on Apr 15 2003

first: Eran

last: Segal

address: Gates Building 1A

department: Computer Science

institute: Stanford University

description: Used to examine wild type and ypl230w mutant under stationary phase.

first: Michael

last: Shapira

first: Aviv

last: Regev

first: Dana

last: Pe'er

last: Botstein

first: Daphne

last: Koller

first: Nir

last: Friedman


title: UTSW Mouse 13.8k cDNA

status: Public on Dec 24 2004

city: Copenhagen

first: Peter

last: Schjerling

address: Bispebjerg Bakke 23, M81

department: Institute of Sports Medicine Copenhagen, ISMC

country: Denmark

institute: Bispebjerg Hospital

description:
Spotted mouse cDNA array containing 13872 spots.

Clones originate from a combination of in house and commercial (IMAGE) mouse EST libraries. Details of library construction and all target clones can be found at http://pga.swmed.edu.


title: Porcine Brain Library array

status: Public on Jun 13 2003

city: East Lansing

first: Steven

middle: Paul

last: Suchyta

address: B215 Anthony Hall

department: Animal Science

institute: Michigan State University

description: cDNA microarray from porcine brain cDNA library

first: William

last: Nobis

first: Xiaoning

last: Ren

middle: P

first: Adroaldo

last: Zanella

first: Paul

middle: M

last: Coussens


title: STv5_MMCC

status: Public on Jul 21 2004

city: Irvine

last: McClelland

address: 132 Med Surge I

department: Microbiology & Molecular Genetics

institute: University of California, Irvine

organism: Salmonella enterica

description: Custom made Salmonella array

first: Steffen

last: Porwollik

first: Scott

last: Jackson

first: Felisa

last: Blackmer

first: Jonathan

middle: G

last: Frye

first: Colleen

last: Eckhardt


title: OMRF Microarray Core Facility Human Print 3

status: Public on Apr 06 2004

city: Oklahoma City

first: Stewart

middle: Alan

last: Shields

address: 825 NE 13th St

department: Arthritis/Immunology

institute: Oklahoma Medical Research Foundation

description: Revision 3 of OMRF human oligonucleotide print map

first: Mark

last: Frank

first: Craig

last: Cadwell

last: Centola

first: Igor

last: Dozmorov


title: Mouse 27K  array (AECOM)

status: Public on Apr 29 2004

first: Leslie

last: Rogler

address: 1300 Morris Park Ave

department: Liver Research Center/ Department of Medicine

institute: Albert Einstein College of Medicine

description:
Spotted long oligonucleotide array on glass. These cDNA  microarrays were obtained from the Albert  Einstein College of Medicine Functional Genomics Facility.
27400 sequence verified mouse clones were spotted in each array. The clones are from 3 sources: the 8968 clones in the MGEM1.0 plates from Incyte, the 14208 clones in the MNCI-V1 plates from NCI (see http://lgsun.grc.nia.nih.gov/cDNA/15k.html), and the 4224 clones in the MIMP-V1 plates originally from Research Genetics.
Keywords = spotted
Keywords = long oligonucleotide

first: Aldo

last: Massimi


title: MegaViroP1

status: Public on Oct 19 2003

first: Joe

last: DeRisi

department: Biochemistry and Biophysics

organism: Viruses

description:
Spotted long oligonucleotide array on glass
This platform includes 10814 oligonucleotides derived from 976 viral species. Most viral oligonucleotides were designed to represent regions of highest genomic conservation. The platform also includes 488 oligonucleotides from 35 bacterial species, 20 oligonucleotides from 2 human endogenous retroviruses, and 308 control oligonucleotides including 108 OPERON oligonucleotides of highly expressed human genes.

Keywords = spotted
Keywords = long oligonucleotide
Keywords = viruses
Keywords = viral discovery

first: David

last: Wang

first: Anatoly

last: Urisman

first: Joseph

middle: L


title: Segal_1

first: Eran

last: Segal

description: Used to examine wild type and kin82 mutant under heat shock.

first: Michael

last: Shapira

first: Aviv

last: Regev

first: Dana

last: Pe'er

last: Botstein

first: Daphne

last: Koller

first: Nir

last: Friedman


title: UCSF elegans2b 20K array

first: Coleen

last: Murphy

description: We used the Research Genetix primer pair set to create almost 20 thousand PCR products, using C. elegans genomic DNA as template.  We printed these PCR products at high density on polylysine-coated glass slides, closely adhering to protocols available at http://microarrays.org.

first: Steven

middle: A

last: McCarroll

first: Andrew

last: Dillin

first: Joshua

last: Lehrer-Graiwer


title: Rat 5K cDNA microarray

status: Public on Mar 01 2004

city: Seoul

first: MyeongHo

last: Jung

address: 5 Nokbun-dong, Eunpyung-gu

department: Biomedical Sciences

country: South Korea

institute: National Institute of Health

description:
RAT 5000 ESTs cDNA microarray slide
Keywords = rat5k

first: YoungHo

last: Suh


title: Riken 20k full-length cDNA

status: Public on Mar 28 2003

city: San Diego

first: Timothy

last: Ravasi

address: 9500 Gilman Drive

department: Department of Bioengineering

institute: University of California-San Diego

organism: Mus musculus

description:
This platform was made in the laboratory of Dr. Yasushi Okazaki at the Riken Genome Science Center, Yokohama Institute in Japan.
This platform is composed of full-length cDNAs from libraries of different embryonic and adult mouse tissues.
Keywords = Riken, full-length libraries

first: Christine

last: Wells

last: Hume

first: Paul

last: Lyons

first: Piero

last: Carninci

first: Yasushi

last: Okazaki

first: John

last: Quackenbush

first: Sultana

last: Razvan

first: Hidemasa

middle: U

last: Bono

first: Geoff

last: Faulkner

first: Ken

last: Yagi


title: Sanger human ver 1

status: Public on Dec 01 2003

city: Bruce

first: Kristine

last: Hardy

state: ACT

address: University of Canberra

country: Australia

institute: University of Canberra

description:
Combines versions of Wellcome Trust Sanger Institute  H. Sapiens 10k array, Hver 1.1.1, 1.2.1, 1.1.2 and 1.3.1. which have ArrayExpress ids, A-SNGR-3, -4 and -5.
Control elements and 5 clones removed.


title: Endothelial Cell Chip

status: Public on Feb 18 2003

city: Palo Alto

first: Jennifer

last: King

department: Cardiovascular Medicine

description: 1200 endothelial gene array spotted cDNAs

first: Michael

last: Ho

first: Eugene

last: Yang

first: George

last: Matcuk

first: David

last: Deng

first: Nick

last: Sampas

first: Anya

last: Tsalenko

first: Raymond

last: Tabibiazar

first: Ying

last: Zhang

first: Mary

last: Chen

first: Said

last: Talbi

first: Yen

middle: D

first: James

last: Wang

first: Philip

last: Tsao

first: Amir

last: Ben-Dor

first: Zohar

last: Yakhini

first: Laurakay

last: Bruhn

first: Thomas

last: Quertermous


title: HCI human

status: Public on Mar 07 2003

city: Denver

first: K

middle: C

last: Malcolm

state: CO

department: Department of Medicine

institute: National Jewish Medical and Research Center

description:
cDNA array
Keywords = neutrophil
Keywords = lipopolysaccharide

first: Kenneth

first: G

last: Worthen

last: Jones


title: Segal_2

city: Stanford

first: Eran

last: Segal

description: Used to examine wild type and ppt1 mutant under hypo-osmotic shock.

first: Michael

last: Shapira

first: Aviv

last: Regev

first: Dana

last: Pe'er

first: David

last: Botstein

first: Daphne

last: Koller

first: Nir

last: Friedman


title: Res Gen Human

status: Public on Aug 24 2003

city: Baltimore

first: Susan

last: Keay

institute: University of Maryland, Baltimore

description: Human cDNA gene array


title: Arabidopsis The Keck Resource Lab 9K Array

status: Public on Feb 05 2003

city: Rehovot

first: Robert

last: Fluhr

department: Plant Sciences

country: Israel

institute: Weizmann Institute of Science

description: The arrays contain 9k ESTs (Keck Resource Lab, Yale University).

first: Sigal

last: Savaldi-Goldstein

first: Olga

last: Davydov


title: NIEHS Rat Chip v1.0

status: Public on Nov 20 2002

city: Thousand Oaks

first: Hisham

middle: K

last: Hamadeh

address: One Amgen Center Drive, Mailstop 5-1-A

department: Toxicology

institute: Currently at: Amgen Inc.

description:
This array was developed in-house at NIEHS, and used for gene expression profiling experiments. A complete listing of the genes on this chip is available at the following Web site: http://dir.niehs.nih.gov/microarray/chips.htm
cDNA microarray chips were prepared according to DeRisi et al., 1996, Nat. Genet. 14, 457-460. The spotted cDNAs were derived from a collection of sequence-verified clones that covered the 3` end of the gene and ranged in size from 500 to 2000 base pairs (Research Genetics). M13 primers were used to amplify insert cDNAs from purified plasmid DNA in a 100 5l polymerase chain reaction (PCR) mixture. A sample of the PCR products (10 microliters) was separated on 2% agarose gels to ensure quality of the amplifications. The remaining PCR products were purified by ethanol precipitation, resuspended in ArrayIt buffer (Telechem, San Jose CA) and spotted onto poly-L-lysine-coated glass slides using a modified, robotic DNA arrayer (Beecher Instruments, Bethesda MD).
-- taken largely verbatim from Hamadeh et al., Toxicological Sciences 67, 219-231 (2002)
Keywords = Toxicogenomics
Keywords = NIEHS


title: Superarray - GEArray Q Series Mouse Apoptosis Gene Array

status: Public on Oct 28 2003

city: Valhalla

first: Anna

last: Csiszar

department: Physiology

institute: New York Medical College

description:
GEArray Q series mouse apoptosis gene array (Superarray, Frederick, MD), catalog number MM-002.

GEArray Q series Mouse Apoptosis Gene Array is designed to profile the expression of 96 key genes involved in apoptosis. The genes are grouped into eleven categories according to their functional and structural features, and include the TNF ligands, TNF receptors, bcl-2, caspases, IAP, TRAF, CARD, death domain family members, death effector domain family members, CIDE domain family members, as well as genes involved in the p53 and ATM pathways.


title: BMAM microarray

status: Public on Feb 07 2003

first: Steven

last: Suchyta

state: MI

description:
Bovine cDNA microarray enhanced for mammary transcripts.
Keywords = cDNA, microarray, mammary, bovine, lactation, involution

first: Sue

last: Sipkovsky

last: Halgren

first: Paul

last: Coussens


title: UP_5Ka

status: Public on Mar 31 2003

city: Philadelphia

middle: Patrick

last: Morley

state: PA

address: 3400 Civic Center Blvd, Bldg 421

department: Penn Cardiovascular Institute

institute: Perelman School of Medicine at the University of Pennsylvania

description: A cDNA microarray with ~5000 human genes and ESTs.

first: Vivian

last: Cheung

first: Laura

last: Conlin

first: Teresa

last: Weber

first: Melissa

last: Arcaro

first: Kuang-Yu

last: Jen

first: Richard

last: Spielman


title: LC-7b

status: Public on Jun 27 2002

last: Stanford Microarray Database

department: Stanford University, School of Medicine

institute: Stanford Microarray Database (SMD)

description:
A microarray with 9216 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 24
Rows per Sector: 24
Column Spacing: 175
Row Spacing: 175


title: SVC

description:
A microarray with 9216 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 24
Rows per Sector: 24
Column Spacing: 200
Row Spacing: 200


title: Sugarcane nylon arrays I

status: Public on Jan 03 2003

city: Campinas

first: Fábio

middle: Tebaldi

last: Nogueira

department: CBMEG

country: Brazil

institute: Institute of Biology

organism: Saccharum sp.

description:
Nylon membranes containing sugarcane ESTs. Plasmid clones were used. A set of sixteen 96-well plates was spotted on two nylon filters (85 mm x 125 mm) in a 4 x 4 array configuration, with a 96 pins hand-held array tool.
Keywords = nylon array, saccharum, cold

first: Fabio

first: Vicente

middle: E

last: de Rosa Jr.

first: Marcelo

last: Menossi

first: Eugenio

last: Ulian

first: Paulo

last: Arruda


title: SHAD2

organism: Homo sapiens

description:
A microarray with 24192 spot features.
Tip Configuration: Standard 32-tip
Columns per Sector: 28
Rows per Sector: 27
Column Spacing: 175
Row Spacing: 175


title: AB-8

technology: antibody

description:
A microarray with 2304 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 12
Rows per Sector: 12
Column Spacing: 175
Row Spacing: 175


title: LC-4b


title: Arabidopsis The Keck Resource Lab 12K Array

first: Robert

last: Fluhr

description: The arrays contain 12k ESTs (Keck Resource Lab, Yale University).

first: Sigal

last: Savaldi-Goldstein

first: Olga

last: Davydov


title: AB-14

description:
A microarray with 1440 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 10
Rows per Sector: 9
Column Spacing: 375
Row Spacing: 375


title: AB-11

description:
A microarray with 1152 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 9
Rows per Sector: 8
Column Spacing: 200
Row Spacing: 200


title: LC-8

description:
A microarray with 18432 spot features.
Tip Configuration: Standard 32-tip
Columns per Sector: 24
Rows per Sector: 24
Column Spacing: 175
Row Spacing: 175


title: SHZ

description:
A microarray with 24192 spot features.
Tip Configuration: Standard 32-tip
Columns per Sector: 28
Rows per Sector: 27
Column Spacing: 155
Row Spacing: 155


title: 10k_Print3

description:
A microarray with 9984 spot features.
Tip Configuration: Standard 4-tip
Columns per Sector: 50
Rows per Sector: 50
Column Spacing: 137
Row Spacing: 137


title: E. coli Panorama Gene Arrays

status: Public on Feb 25 2002

city: Bethesda

first: Pavel

last: Khil

address: 5 Memorial Dr.

institute: NIDDK

organism: Escherichia coli

description: Sigma-Genosys Panorama E. coli Gene Arrays. Each Panorama array contains PCR-amplified open reading frames (ORFs) from the E. coli K-12 (MG1655) genome. The majority of ORFs have been amplified from start to stop codon. All of the 4,290 ORFs have been printed in duplicate at 10 ng per spot onto positively charged nylon hybridization membranes.


title: 10k_print1

address: 300 Pasteur Drive

description:
A microarray with 10176 spot features.
Tip Configuration: Standard 4-tip
Columns per Sector: 51
Rows per Sector: 50
Column Spacing: 200
Row Spacing: 200


title: ecoli_8.0

status: Public on Jul 30 2001

description:
A microarray with 5764 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 19
Rows per Sector: 19
Column Spacing: 200
Row Spacing: 200


title: LIMA_SlideB

status: Public on May 17 2005

city: New Haven

first: E. Janet

last: Hager

state: CT

address: 300 George Street, Suite 2110

department: W.M. Keck Foundation Biotechnology Resource Laboratory

institute: Yale University School of Medicine

description:
Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other public resources. Mapping to TIGR rice genome pseudommolecues release 2 is based on the BLAST results, if a oligo has greater than 97% identity to a gene sequence from TIGR pseudomolecules, the oligo represents that gene. If the oligo matches to multiple genes, only one gene ID is randomly chosen. Preference is given to a 100% match. Rice 30K Operon Version 1.0 -70 mer oligos. The array is in 48 pin conformation. It has 25 columns and 25 rows in each of 4 x 12 subarrays. This is the slideB of the two slide sets.
Platform_catalog_number: XDEN-A
Platform_coating: poly L lysine
Platform_manufacture_protocol: Omnigrid 100 contact printer; TeleChem Stealth SMP3 split pins; See http://keck.med.yale.edu/dnaarrays/printing
Platform_manufacturer: Keck Biotechnology Resource Lab at Yale
Platform_support: glass slide
Platform_technology: spotted oligonucleotide

first: XingWang

last: Deng


title: 5K

description:
A microarray with 5760 spot features.
Tip Configuration: Standard 4-tip
Columns per Sector: 38
Rows per Sector: 38
Column Spacing: 175
Row Spacing: 175


title: Stanford Zea mays

status: Public on Oct 09 2001

city: Stanford University

first: Yangrae

last: Cho

address: 385 Serra Mall

department: Biological Sciences

institute: Stanford University

organism: Zea mays

description:
A maize array fabricated with 5,376 unique expressed sequence tag (EST) clones sequenced from 4-day-old roots, immature ears and adult organ cDNA libraries.
mRNA source: Zea mays strain with genetic background K55 (75%), W23 (20%), Robertson's Mutator (5%).

first: Virginia

last: Walbot


title: Human cDNA array - v01

first: Yipeng

last: Wang

institute: Vaccine Research Institute of San Diego

description: Human cDNA array printed in triplicate. 50% DMSO as printing solution. Corning UltraGaps slides.

first: Gaelle

last: Rondeau

first: John

last: Welsh


title: ce_rosetta

status: Public on Jul 24 2001

last: Stanford Microarray Database

description:
A microarray with 13323 spot features.
Tip Configuration: Standard 1-tip
Columns per Sector: 1
Rows per Sector: 1
Column Spacing: 1.1
Row Spacing: 1.1


title: ecoli_3.0

description:
A microarray with 5760 spot features.
Tip Configuration: Standard 16-tip
Columns per Sector: 18
Rows per Sector: 20
Column Spacing: 1.1
Row Spacing: 1.1


title: NHGRI_Human_8K

status: Public on Jan 24 2001

first: Michael

last: Bittner

department: Cancer Genetics Branch

institute: NHGRI, NIH

description:
The 8,150 human cDNAs used in this microarray were obtained under a Cooperative Research and Development Agreement with Research Genetics and 6,912 were verifed by sequence.
This set of cDNAs is part of a larger collection (http://www.nhgri.nih.gov/DIR/Microarray/main.html).
On the basis of the UniGene build of 9 March 2000, the 8,150 cDNAs represent 6,971 unique genes in this array.
All clones were confirmed by resequencing if necessary.


title: yeast_ag fungicides_npuru

status: Public on May 01 2005

city: University

first: Isabelle

middle: Ann

last: Kagan

state: MS

address: University Ave.

department: US Department of Agriculture

institute: National Center for Natural Products Research

description:
These Saccharomyces cerevisiae cDNA microarrays were designed and made at the Ontario Cancer Institute's microarray facility, using Corning's Gamma Amino Propyl Silane (GAPS) II  coated glass slides.  The microarrays consisted of 6240 S. cerevisiae ORFs that were double-spotted, plus internal controls of 3X SSC and Arabidopsis thaliana cDNA, for a total of 12800 spots.  Spots were grouped in 20x20 sectors  (400 spots per sector).  These 20x20 squares were arranged on a grid of 8 rows with 4 columns per row (4 20x20 sectors per row, 8 rows total).
Keywords = Saccharomyces cerevisiae
Keywords = ergosterol
Keywords = methionine
Keywords = microarray
Keywords = biosynthesis
Keywords = agriculture
Keywords = fungicide

first: Albrecht

last: Michel

first: Anja

last: Prause

first: Brian

last: Scheffler

first: Pat

last: Pace

first: Stephen

middle: O

last: Duke


title: 13k cDNA chip NCCS

status: Public on May 03 2005

city: SG

first: Amit

last: Aggarwal

department: Cellular and Molecular Research

country: Singapore

institute: National Cancer Centre of Singapore

description: 13k element cDNA chip printed at National Cancer Centre of Singapore in 2001

first: Patrick

last: Tan


title: PyxisGenomics CattleArray3800

status: Public on May 24 2005

city: Pullman

first: Kevin

middle: Karl

last: Lahmers

state: WA

department: Veterinary Microbiology and Pathology

institute: Washington State University

organism: Bos taurus

description: The array elements were selected from cDNA clones derived from expressed sequence tags (ESTs) of bovine spleen and normalized placenta libraries. The ESTs representing distinct genes were determined via sequence similarity searches against human UniGene sequences using an E value of e10-5 as a threshold. The CattleArray3800 contains positive expression controls: beta actin (ACTB); phosphoglycerate kinase 1; (PGK1); hypoxanthine phosphoribosyltransferase (HPRT) and beta-2-microglobulin (B2M). Two exogenous plant genes, soy rubisco small chain 1 (RBS1) and chlorophyll ab binding protein (CAB) can be used as negative or spiking controls.


title: Cotton Array #1

status: Public on Apr 21 2005

city: Canberra

first: Andrew

last: Spriggs

address: GPO Box 1600

department: Bioinformatics Group

institute: CSIRO Plant Industry

organism: Gossypium hirsutum

description:
Cotton Array #1
Keywords = cotton, Fusarium wilt, AtsC, virulence, in planta expressed genes

first: Helen

last: McFadden


title: BCCRC Lam SMRT array 32k

city: Vancouver

first: Jon

last: Davies

state: BC

address: 675 W 10th Ave

institute: BC Cancer Research Centre

description:
A tiling resolution array of 32,433 overlapping BAC clones spanning the human genome
Keywords = SMRT tiling array


title: 2-Spotted cDNA/NIA

city: Research Triangle Park

first: Kenneth

middle: Lyon

last: Phillips

state: NC

institute: Paradigm Array Labs

description:
2-Spotted cDNA/NIA
Keywords = cDNA


title: 5-Spotted cDNA/NIA

description:
-Spotted cDNA/NIA
Keywords = cDNA


title: Commercial Oligo 3/Resident

description:
Spotted oligonucleotide array on glass
Keywords = Oligonucleotide


title: BCCRC Lam SMRT array 32k_1.1

description:
A tiling resolution array of 32,433 overlapping BAC clones spanning the human genome (NOTE: this is the same clone-set as the "BCCRC Lam SMRT array 32k" except that clones with insufficient annotation data have been removed; genome coverage remains the same).

Keywords = SMRT tiling array


title: aIW10

status: Public on May 18 2005

organism: Arabidopsis thaliana

description:
aIW10
Keywords = haemoglobin, hypoxic stress, stress

first: Peter

middle: W

last: Hunt


title: Ramaciotti Centre for Gene Function Analysis Mouse Compugen 22k

city: Sydney

last: Little

institute: School of Biotechnology and Biomolecular Sciences, The University of New South Wales

description:
65mer oligonucleotide arrays produced by the Ramaciotti Centre for Gene Function Analysis, University of New South Wales, Sydney, Australia. For more details:
http://www5.amershambiosciences.com/aptrix/upp01077.nsf/Content/microarrays_control_reagents_universal_scorecard

first: Jeremy

middle: N

last: Pulvers

first: Chris

middle: J

last: Cotsapas

first: Rohan

middle: B

last: Williams

first: David

last: Nott

first: Eva

last: Chan

first: Mark

last: Cowley

middle: F


title: Caco-2 in-house array

status: Public on May 08 2005

city: Wageningen

first: Linette

last: Pellis

address: Bornsesteeg 45

institute: RIKILT-Institute of Food Safety

description: cDNA library derived from subtraction of differentiated and undifferentiated Caco-2 cells


title: CAG-32k_48pen

status: Public on Apr 13 2005

city: Baltimore

first: rafael

last: irizarry

state: MD

institute: Johns Hopkins University

description: TIGR Human Array

first: Rafael

middle: A

last: Irizarry


title: CardioChip heart failure

status: Public on May 14 2005

city: Camperdown, Sydney

first: Masako

last: Tsubakihara

state: New South Wales, Australia

address: MRU, W103 Anderson Stuart Bldg (F13), Institute for Biomedical Research, University of Sydney

institute: University of Sydney

description: CardioChip gene expression analysis of 50 heart failure samples including 8 different etiologies.

first: Paul

last: Allen

first: Cristobal

middle: G

last: dos Remedios

first: Victor

last: Dzau

first: C

last: Liew


title: LIMA_SlideA

first: E. Janet

last: Hager

organism: Oryza sativa

description:
Oryza sativa Genome Oligo Set Version 1.0 was designed by Beijing Genomics Institute (BGI) and contain 60,727 70mer oligos representing both indica and japonica genomes. All oligos were designed from cDNAs, expreseed sequence tag (EST) sequences, predicted genes of BGI rice genome build and other public resources. Mapping to TIGR rice genome pseudommolecues release 2 is based on the BLAST results, if a oligo has greater than 97% identity to a gene sequence from TIGR pseudomolecules, the oligo represents that gene. If the oligo matches to multiple genes, only one gene ID is randomly chosen. Preference is given to a 100% match. Rice 30K Operon Version 1.0 -70 mer oligos. The array is in 48 pin conformation. It has 25 columns and 25 rows in each of 4 x 12 subarrays. This is the slideA of the two slide sets.
Platform_catalog_number: XDEN-A
Platform_coating: poly L lysine
Platform_manufacture_protocol: Omnigrid 100 contact printer; TeleChem Stealth SMP3 split pins; See http://keck.med.yale.edu/dnaarrays/printing
Platform_manufacturer: Keck Biotechnology Resource Lab at Yale
Platform_support: glass slide
Platform_technology: spotted oligonucleotide

first: XingWang

last: Deng


title: Human 20K cDNA array

status: Public on Apr 12 2005

description: Human 20K cDNA microarrays were obtained from the Johns Hopkins Cancer Center Microarray Core (Baltimore, MD).  They contain 20,000 genes and ESTs from the Research Genetics "Image Consortium" cDNA set.


title: AECOM-H3-H11

city: New York

first: Veronique

last: Bourdon

department: Human Genetics

institute: Memorial Sloan Kettering Cancer Center

description: cDNA array


title: Sense-Antisense

status: Public on Mar 31 2005

city: Tsukuba

first: Shigeru

last: Iwase

department: BioResource center

institute: RIKEN

description:
Mouse natural sense-antisense transcripts
Keywords = non-coding RNA

first: Hidenori

last: Kiyosawa

first: Nathan

last: Mise

first: Yoshihide

last: Hayashizaki

first: Kuniya

last: Abe


title: Peter Mac 10.5k Human cDNA microarray

status: Public on Mar 30 2005

city: East Melbourne

first: Ryan

last: Laar

state: Victoria

address: St.Andrews Place

institute: The Peter MacCallum Cancer Centre

description: Peter Mac 10.5k Human cDNA microarray

first: David

last: Bowtell

first: Andrew

last: Holloway


title: NovusGene type2 cancer array

status: Public on Mar 22 2005

city: Tokyo

first: Junko

middle: H

last: Ohyashiki

address: 6-7-1, Nishishinjuku, Shinjuku-ku

department: Intractable Immune System Diseases Research Center

institute: Tokyo Medical University

description:
Pathway focused low-density  amino-linked oligonucleotide microarray (Novusgene Inc., Tokyo, Japan: http://www.novusgene.co.jp/c_tech/technology-e.html) which contains 240 selected genes related with cell growth, signal transcription,and extracellular matrix. This DNA chip was made up of tetra-plicate spots of 48-mer oligonucleotide highly specific probes. To obtain reproducible results, a subset of genes were spotted more than four (i.e housekeeping genes, and negative control).
Keywords = lymphoma


title: NovusGene type1 inflammatory response microarray

description:
Pathway focused low-desnity amino-linked oligonucleotide microarray (Novusgene Inc., Tokyo, Japan: http://www.novusgene.co.jp/c_tech/technology-e.html) which contains 288 selected genes related with cell cycle, apoptosis,  DNA repair and cell stress responses. This DNA chip was made up of tetra-plicate spots of 48-mer oligonucleotide highly specific probes. To obtain reproducible results, a subset of genes were spotted more than four (i.e housekeeping genes, and negative control).
Keywords = inflamatory response


title: 7-Spotted cDNA/NIA

first: Kenneth

last: Phillips

description:
Spotted cDNA
Keywords = cDNA


title: TRC Standard Spotted Array

description:
Spotted 70mer oligonucleotide array on glass
Keywords = Oligonucleotide


title: 6-Spotted Oligo/Compugen


title: NIA_Mouse_7.4K_cDNA

city: Singappore

first: Althea

last: Chua

institute: Bioinformatics Institute

description:
Array used is a cDNA spotted glass array.  Clones are obtained from the NIA 7.4K mouse library.
The source of the reporter molecules and associated references can be found at: http://lgsun.grc.nia.nih.gov/cDNA/NIA_7_4k.html
Array with 16896 features, in 48 zones, with 7815 biosequences representing 7912 reporters and 0 composite sequences, with surface type polylysine
The custom microarrays are manufactured by the Microarray Laboratory of Bioprocessing Technology Institute (BTI). Microarrays are printed with a Biorad Chipwriter Pro robotic arrayer fitted with a printhead and 48 SMP3 print tips from Telechem (http://www.arrayit.com). The microarray spot densities are 200 microns(center-to-center). The arrays are 48 blocks 22 rows 16 column.
Array Express Accession no. A-MEXP-176


title: Spotted oligo/Operon


title: Maize cDNA Generation II Version B

city: Ames

first: Patrick

middle: S.

last: Schnable

address: 2035B Roy J Carver Co-Lab

institute: Iowa State University

description: The ISU microarray facility have generated a maize gene chip that contains 12,160 spotted cDNA inserts. These cDNA clones were obtained from NSF Plant Genome EST projects led by Ginny Walbot and Pat Schnable.

middle: S


title: Staphylococcus epidermidis oligo microarray

status: Public on Mar 16 2005

city: Hamilton

first: Yufeng

last: Yao

state: MT

department: RML

institute: NIH

organism: Staphylococcus epidermidis

description: The 70-mers oligo sequences were designed by Operon based on Staphylococcus epidermidis strain RP62A genome sequence from TIGR. Each oligo was printed twice on slides.

first: Daniel

last: Sturtevant

first: Michael

last: Otto


title: 15k-2/3

status: Public on Mar 15 2005

city: Bethesda

first: Alan Lap-Yin

last: Pang

address: 49 Convent Drive, Room 2C08, MSC 4429

department: NICHD/LCG/SDG

institute: National Institutes of Health

description: NIA mouse 15k cDNA clone set 2 of 3

first: Warren

last: Johnson

first: Neelakanta

last: Ravindranath

first: Martin

last: Dym

first: Owen

middle: M

last: Rennert

first: Wai-Yee

last: Chan


title: 15k-1/3

description: NIA mouse 15k cDNA clone set 1 of 3


title: 1-Spotted cDNA/TIGR

description:
Spotted cDNA
Keywords = cDNA


title: aIW11Reverse

status: Public on Apr 20 2005

last: Spriggs

description:
aIW11Reverse
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor

first: Christian

last: Delessert


title: 3-Spotted cDNA/NIA

description:
3-Spotted cDNA/NIA
Keywords = cDNA


title: aIW11

description:
aIW11
Keywords = ATAF2, NAC-Domain, PR, gene expression regulation, wounding, transcription factor


title: NIA mouse 15K made from VMSR

status: Public on Apr 14 2005

city: Nashville

first: Zheng

last: Liu

state: TN

institute: Vanderbilt University

description: this microarray used NIA mouse 15K cloneset made from Vanderbilt Microarray Shared Resource(VMSR)

first: Thomas

last: Aune


title: AECOM Mouse 27K Chip

status: Public on Apr 18 2005

city: La Jolla

first: Dan

last: Zhou

address: CMG 103, 9500 Gilman Drive, MC0735

department: Pediatrics

institute: University of California, San Diego, School of Medicine

description:
These cDNA microarrays were obtained from the Albert Einstein College of Medicine microarray facility.
PCR products of 27400 sequence verified mouse clones were spotted in each array. The clones are from 3 sources: the 8968 clones in the MGEM1.0 plates from Incyte, the 14208 clones in the MNCI-V1 plates from NCI (see http://lgsun.grc.nia.nih.gov/cDNA/15k.html), and the 4224 clones in the MIMP-V1 plates originally from Research Genetics.

first: Chenghao

last: Fen

first: Dumitru

last: Iacobas

first: Qiaofang

last: Chen

first: James

middle: K

last: Lai

first: Orit

last: Gavrialov

first: Gabriel

last: Haddad


title: Sigma Panorama Mouse cytokine gene array

status: Public on Feb 23 2005

city: Knoxville

first: Bin

last: Wan

institute: University of Tennessee, Knoxville

description: The plateform is designed to fit for the output format of ArrayVision (V6.0). Genes are listed in coordination order on the array.


title: MouseTox/Neuro cDNA

status: Public on Feb 18 2005

city: Missoula

first: Corbin

last: Schwanke

department: Biomedical and Pharmaceutical Sciences

institute: University of Montana

description: PCR product cDNA arrays printed from BMAP clone libraries using Virtek ChipWriter arrayer.  Arrays are printed on GAPS slides (Corning) in 3 side by side replicates and 2 duplicate supergrids for a total of 6 replicate spots.

first: Mark

last: Pershouse


title: aIW09

status: Public on Apr 09 2005

city: Canberra

first: Andrew

institute: CSIRO Plant Industry

description:
aIW09
Keywords = flowering, growth and development, gene structure and expression

first: Iain

last: Wilson


title: STv5B_MMCC

status: Public on Feb 04 2005

city: Irvine

first: Michael

last: McClelland

address: 132 Med Surge I

department: Microbiology & Molecular Genetics

institute: University of California, Irvine

organism: Salmonella

description: Custom made Salmonella array

first: Steffen

last: Porwollik

first: Scott

last: Jackson

first: Felisa

last: Blackmer

first: Jonathan

last: Frye

first: Colleen

last: Eckhardt


title: Sigma mouse oligo set, Washington University

status: Public on Apr 02 2005

city: St Louis

middle: Alexander

last: Grimm

state: MO

address: 660 S Euclid Ave, Campus Box 8103

department: Molecular Biology and Pharmacology

description: 65-mer oligo probe set provided by Sigma.  Printed at the Microarray Core Facility at Washington University School of Medicine in St. Louis, MO. Arrays consist of 23232 spots on glass slides, including 232 GAPDH spots as a hybridization control.

first: Seth

last: Crosby


title: Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv301.02.Z)

status: Public on Jan 09 2005

city: Tucson

first: David

middle: William

last: Galbraith

state: AZ

address: 303 Forbes Building

department: Plant Sciences and Bio5 Institute

institute: University of Arizona

description: This oligonucleotide array is produced from the Operon Version 3.0 Array-Ready Oligo set (AROS), which comprises 29,110 70-mer oligonucleotides representing 26,173 protein-coding genes, and 28,964 protein-encoding gene transcripts, and 87 microRNA gene precursors.  AROS design is based on ATH1 release 5.0 of the TIGR Arabidopsis genome annotation database, and Release 4.0 of the miRNA Registry at the Sanger Institute.  Various additional elements are printed as controls.  Microarrays can be ordered from the Galbraith laboratory. This platform represents slides ATv301.02.001-ATv301.02.300 (http://www.ag.arizona.edu/microarray).


title: Chlamy 36mer array

status: Public on Jan 17 2005

city: Moffett Field

first: Waraporn

last: Tongprasit

state: CA

institute: NASA Ames Research Center

organism: Chlamydomonas reinhardtii

description: 389,285 different 36-mer oligonucleotide probes were selected from the V2 genome sequence of Chlamydomonas reinhardtii that was available from the JGI website (ftp://ftp.jgi-psf.org/pub/JGI_data/Chlamy/chlre2/) in February 2004. The probes are covering predicted proteins and intergenic regions. The selected oligonucleotides were synthesized on a glass-based array using an in situ maskless photolithographic synthesis device.

first: Viktor

last: Stolc

first: Manoj

middle: P

last: Samanta

first: Wallace

last: Marshall


title: Potato 10k cDNA array version 1

city: Rockville

first: Li

last: Zheng

address: 9712 Medical Center Dr.

institute: The Institute for Genomic Research

organism: Solanum tuberosum

description:
Spotted PCR amplified cDNA array on glass.
This version 1 set includes PCR products amplified from 15264 potato EST clones.
Each PCR product is duplicated on the slide. The number of total spots including empty and controls is 32448.

first: Carol

middle: Robin

last: Buell


title: 15k-3/3

first: Alan Lap-Yin

last: Pang

description: NIA mouse 15k cDNA clone set 3 of 3

first: Warren

last: Johnson

first: Neelakanta

last: Ravindranath

first: Martin

last: Dym

first: Owen

last: Rennert

first: Wai-Yee

last: Chan


title: DmelWhiteLab2003Oct23_r40

status: Public on Jan 07 2005

city: Cambridge

first: Scott

last: Rifkin

state: MA

address: 16 Divinity Ave

department: OEB

institute: Harvard University

organism: Drosophila melanogaster

description:
PCR fragment spotted array with 95% of the genes in D. melanogaster BDGP release 4.0	Array has 8 rows of 4 blocks each, numbered 1-32 starting in the upper left and ending in the lower right.  16 pins used to print.  Each KP is only spotted once.
KP# annotation file	files used:	isPcr:  http://www.soe.ucsc.edu/~kent/src/ options -out=bed -maxSize=1500 accessed: 22 Dec 04
D. mel. euchromatin release 4:  ftp://ftp.fruitfly.org/pub/download/compressed/na_euchromatin_genomic_dmel_RELEASE4.FASTA.gz accessed: 22 Dec 04
D. mel. .gff annotation files by chromosome:  ftp://flybase.net/genomes/Drosophila_melanogaster/current/gff/dmel-[CHR]-r4.0.gff.gz accessed 22 Dec 04
D. mel. .fasta transcript and gene files:  ftp://flybase.net/genomes/Drosophila_melanogaster/current/fasta/dmel-all-[transcript/gene]-r4.0.fasta.gz accessed 22 Dec 04
Heterochromatin from release hetr32b:  ftp://flybase.net/genomes/Drosophila_melanogaster/current_hetchr/ accessed 28 Dec 04
Used dmel-all-chromosome.hetr32b.fasta and similar files as above
r4.0 euchromatin extends into heterochromatin.  However, genes.gff files don't seem to yet.  So some KPs may have multiple chromosomes listed e.g. 2h,2R but are still good.
Gene calls are based first on transcripts (isPcr.transcript file).  So if a probe hits an intron in gene A on the + strand and transcript in gene B on the - strand, it will call it for gene B
If it hits no transcripts but it hits a gene, it calls it for that gene (this is slightly inconsistent in how complete we regard the annotation)
In PCR_results field, I don't have the data for the KPST genes so I filled these in with 1MB (1 maybe) except for KPST3 (dpp) which apparently did not work.  Note that KPST8 is GFP.
Note also that for some genes the PCR_results says 2 or more bands, but it is flagged good.  For these, there were 2 or more hits in the same transcript in the genome, so we'd expect multiple bands.
Fields should be self-explanatory except SPOT_GROUP.  These are KPs which hit the same transcript with one catch:  singletons are left alone.
If KP1, KP2, KP3, KP4, and KP5 are probes and T1-5 are transcripts of a gene ('{' means contained in) and KP1{T1,T5 KP2{T2, KP3{T2,T3 , KP4{T3,T4, KP5{T2 then:
The spot groups will be [KP1], [KP2,KP5], [KP3,KP4]
Keywords = spotted, PCR product, Drosophila melanogaster


title: MegaViroP1-P7

status: Public on Mar 01 2005

city: San Francisco

first: Joe

last: DeRisi

department: Biochemistry and Biophysics

institute: University of California, San Francisco

description:
Spotted 70-mer nucleotide array on glass.
This platform includes ~11,000 oligonucleotides derived from ~1000 viral species. Most viral oligonucleotides were designed to represent regions of highest conservation among viral genomes. The platform also includes 488 oligonucleotides from 35 bacterial species, 20 oligonucleotides from 2 human endogenous retroviruses, and 308 control oligonucleotides including 108 OPERON oligonucleotides of highly expressed human genes. This platform is essentially the same as GPL366, except 316 new viral oligos from 32 viruses sharing little sequence homology with other viruses have been added; these oligos were selected from protein coding regions using ArrayOligoSelector software (Bozdech Z, Zhu J, et. al 2003).
Keywords = viruses, virus detection, virus discovery

last: Wang

first: Anatoly

last: Urisman

first: Joseph

middle: L


title: FHCRC Fly 12K v1.0

status: Public on Mar 18 2005

city: Seattle

first: Ryan

last: Basom

address: 1100 Fairview Ave N

institute: Fred Hutchinson Cancer Research Center

description: 12,144 feature Drosophila cDNA array representing clones which have been obtained in large part from the following three main collections: 1) BDGP DGCr1 2) BDGP DGCr2 3) Northwest Drosophila Microarray Consortium Members ("consortium") Representation on the array from these three sources breaks down as follows: DGCr1: 5,930 clones; ~ 48.8% DGCr2: 5,928 clones, ~48.8% consortium: 127, ~1.0% with a remaining 160 features (~1.3%) serving as controls, comprised of 4 arabidopsis genes (Cab, NAC1, PRKase, and RUBISCO) to serve as negative controls as well as fly genomic DNA to serve as a positive control, all spotted on each of the 32 blocks of the array.


title: yB2

city: Palo Alto

first: Michael

last: Shapira

address: 300 Pasteur Dr. Lane Bldg. room L309

department: Genetics

institute: Stanford University

organism: Saccharomyces cerevisiae

description:
Coating: unknown_surface_type
Support: glass
Manufacturer: Catherine,,Ball; Stanford University School of Medicine, Department of Genetics, CCSR Room 2255b, Stanford, CA, USA, 94305; 650-498-6012; ball@genome.stanford.edu
Technology: other


title: Multi-species cDNA array

status: Public on Jan 25 2005

city: New Haven

first: Yoav

last: Gilad

address: 333 Cedar St.

institute: Yale

organism:
Macaca mulatta
Pan troglodytes
Pongo pygmaeus
Homo sapiens

description: Multi-species cDNA array

first: Paul

last: Bertome

first: Mark

last: Gerstein

first: Kevin

last: White


title: DmelWhiteLab2003Dec01_r40


title: DmelWhiteLab2003Jul30_r40


title: DmelWhiteLab2003Oct20_r40


title: Xenopus 21.5k cDNA microarray set1

status: Public on Mar 05 2005

first: Yongchol

last: Shin

address: 4115 McGaugh Hall

department: Developmental and Cell Biology

organism: Xenopus laevis

description:
This microarray was created using normalized cDNA libraries. These libraries were generated using neurula and tailbud Xenopus embryos. The EST sequence information of arrayed cDNAs is available at the XDB website, http://xenopus.nibb.ac.jp. Amplified cDNAs from libraries were spotted on the glass slides.
21504 spots.
Keywords = Xenopus laevis
Keywords = neurula
Keywords = tailbud
Keywords = cDNA

first: Atsushi

last: Kitayama

first: Tetsuya

last: Koide

first: Daniel

last: Peiffer

first: Makoto

last: Mochii

first: Arnold

last: Liao

first: Naoto

last: Ueno

first: Ken

middle: W

last: Cho


title: Qiagen-NRSP-8 porcine oligo array

city: Ames

first: Christopher

last: Tuggle

state: IA

address: 2255 Kildee Hall

department: Animal Science

institute: Iowa State University

organism: Sus scrofa

description:
To develop broadly useful tools in porcine functional genomics, Qiagen-Operon and the USDA-NRSP-8 Swine Genome community collaborated to develop a novel 13K oligonucleotide set (porcine AROS 1.0/1.0 Extension; www.qiagen.com) . The Qiagen oligonucleotide set represents porcine cDNAs and EST, designed from TIGR Tentative Consensus cDNA sequences. These 70-mer oligonucleotides were designed to minimize cross-hybridization and to be as specific to the gene of interest as possible.
Keywords = Pig
Keywords = oligonucleotide microarray
Keywords = tissue
Keywords = infection
Keywords = expression

first: Shu-Hong

last: Zhao

first: Justin

last: Recknor

last: Kuhar

first: Dan

last: Nettleton

first: Joan

last: Lunney

first: Sarah

last: Orley

first: Jolita

last: Uthe

first: Shawn

last: Bearson

first: Harry

last: Dwason


title: Xenopus 21.5k cDNA microarray set2

first: Yongchol

last: Shin

description:
This microarray was created using normalized cDNA libraries. These libraries were generated using tailbud Xenopus embryos. The EST sequence information of arrayed cDNAs is available at the XDB website, http://xenopus.nibb.ac.jp. Amplified cDNAs from libraries were spotted on the glass slides.
21504 spots.

Keywords = Xenopus laevis
Keywords = neurula
Keywords = tailbud
Keywords = cDNA

last: Kitayama


title: Mouse QRNA prediction array

status: Public on Mar 08 2005

city: Toronto

first: Tomas

last: Babak

state: ON

address: 112 College St

department: Banting and Best Department of Medical Research

institute: Best Institute

organism: Mus musculus

description:
This array contains probe sequences for discovery of novel mouse ncRNA as described in Babak, Blencowe, and Hughes (2005).
Keywords = ncRNA

first: Benjamin

last: Blencowe

first: Timothy

middle: R

last: Hughes


title: Yeast spotted cDNA microarray

city: Worcester

first: Oliver

last: Rando

address: 364 Plantation St.

institute: UMass Medical School

description: Spotted cDNA array

first: Michael

last: Dion

first: Steven

last: Altschuler

first: Lani

last: Wu

middle: J


title: Rice Chromosome 4 Tilling-Path

city: Pasadena

first: Yuling

last: Jiao

address: 1200 E California Blvd

department: Biology

institute: California Institute of Technology

description:
The array represent a minimal tilling-path coving rice chromosome 4. This tilling-path was assembled using 14,742 randomly sheared shotgun subclone fragments. All subclone fragments were PCR amplified using universal primers and plasmids containing the genomic DNA fragment as the template. DNA gel analysis was performed for all fragments and poor amplification were not included here. In the final count by comparing with the TIGR version 2.0 sequence, 95.5% of the sequence of this chromosome is covered by the array.
Keywords = rice
Keywords = chromosome 4
Keywords = tilling-path

first: Peixin

last: Jia

first: Shuliang

last: Yu

first: Bin

last: Han

first: Xing

last: Deng


title: DmelWhiteLab2002Jul29_r40

first: Scott

last: Rifkin


title: Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv301.03.Z and ATv301.04.Z)

status: Public on Jan 04 2005

first: David

last: Galbraith

description: This oligonucleotide array is produced from the Operon Version 3.0 Array-Ready Oligo set (AROS), which comprises 29,110 70-mer oligonucleotides representing 26,173 protein-coding genes, and 28,964 protein-encoding gene transcripts, and 87 microRNA gene precursors.  AROS design is based on ATH1 release 5.0 of the TIGR Arabidopsis genome annotation database, and Release 4.0 of the miRNA Registry at the Sanger Institute.  Various additional elements are printed as controls.  Microarrays can be ordered from the Galbraith laboratory. This platform represents slides ATv301.03.001-300 and ATv301.04.001-308 (http://www.ag.arizona.edu/microarray).


title: DmelWhiteLab2001Aug22_r40


title: DmelWhiteLab2003Aug19_r40


title: Gm-r1021 + Gm-r1083

status: Public on Dec 25 2004

city: Urbana

first: Lila

middle: O.

last: Vodkin

state: IL

address: 1201 W. Gregory Dr.

department: Crop Sciences

institute: University of Illinois

organism: Glycine max

description:
9,216 single-spotted PCR inserts of cDNA clones from 8-day old seedling roots, seedling roots inoculated with Bradyrhozobium japonicum, 2-month old roots, and whole seedlings
Keywords = soybean

middle: O

first: Anupama

last: Khanna

first: Robin

last: Shealy

last: Clough

first: Delkin

last: Gonzalez

first: Reena

last: Phillip

first: Gracia

last: Zabala

first: Francoise

last: Thibaud-Nissen

first: Mark

last: Sidarous

first: Martina

middle: V

last: Stromvik

first: Elizabeth

last: Shoop

first: Christina

last: Schmidt

first: Ernest

last: Retzel

first: John

last: Erpelding

first: Randy

middle: C

last: Shoemaker

first: Alicia

last: Rodriguez-Huete

first: Joseph

last: Polacco

first: Virginia

last: Coryell

first: Paul

last: Keim

first: George

last: Gong

first: Lei

last: Liu

first: Jose

last: Pardinas

first: Peter

last: Schweitzer


title: yB12

first: Michael

last: Shapira

description:
Coating: unknown_surface_type
Support: glass
Manufacturer: Janos,,Demeter; Dept. Genetics, CCSR 2255, Stanford, CA, USA, 94305; 726-0075; jdemeter@genome.stanford.edu
Technology: other


title: DmelWhiteLab2003Dec03_r40

first: Scott

middle: A

last: Rifkin


title: YB3

description:
Coating: unknown_surface_type
Support: glass
Technology: other
Platform_decription: Manufacturer: Michael,,Shapira; Genetics Dept., LANE building, L309, 300 Pasteur Dr., Palo Alto, CA, US; (650)723-4973; mshapira@stanford.edu


title: Gm-r1088

first: Lila

last: Vodkin

description:
9,216 single-spotted PCR inserts of cDNA clones from cotyledons and hypocotyls of germinating seedlings and leaves and other plant parts subjected to various pathogens or environmental stress conditions and also from tissue-culture derived somatic embryos
Keywords = soybean

first: Anupama

last: Khanna

first: Robin

last: Shealy

first: Steven

last: Clough

first: Delkin

last: Gonzalez

first: Reena

last: Phillip

first: Gracia

last: Zabala

first: Francoise

last: Thibaud-Nissen

first: Mark

last: Sidarous


title: Rat 2K Array

status: Public on Jan 26 2005

city: Milwaukee

first: David

middle: P.

last: Basile

state: WI

address: 8701 Watertown Plank

department: Physiology

institute: Medical College of Wisconsin

organism: Rattus norvegicus

description: The custom microarrays were manufactured by the Department of Physiology at the Medical College of Wisconsin. Microarrays were printed with a GMS 417 robotic arrayer from Affymetrix (made by Genetic Microsystems) that has a printhead with 4 pin-and-ring print tips.  Arrays were prepared from the first 18 of 88 plates of a rat cDNA library from Research Genetics.  The clone set represents 1631 known genes and 192 ESTs. We included 506 negative control spots and 456 positive control spots.  Following amplification, PCR amplicons were distributed into 384-well polypropylene plates (Genetix, 384 micro array), resuspended in 50% DMSO and printed onto poly-L-lysine coated glass slides.  Print configuration is 8 blocks in a 2 x 4 arrangement. Positive controls were printed in each block, and included beta-actin and GAPDH.  Negative controls were also printed in each block, and included 5 Arabidopsis gene fragments, mouse COT-1, DMSO, poly dA, yeast tRNA, and PCR buffer with and without primers. The microarray spot density is 250 microns (center-to-center).  Spot diameters are approximately 120-150 microns.  After printing, DNA was cross-linked to the slides by UV irradiation at 65 mJ (Stratalinker UV Crosslinker, Stratagene).  The microarrays were post-processed according to the procedures on the Stanford website (http://cmgm.stanford.edu/pbrown/protocols/index.html) and subsequently stored at room temperature in a desiccated chamber until use.

first: Allen

last: Cowley Jr.

first: Minyu

last: Liang

first: Andrew

last: Greene

first: Elizabeth

last: Berdan

first: Katherine

last: Fredrich


title: DmelWhiteLab2001Jun_r40


title: DmelWhiteLab2001Nov18_r40


title: tRNA microarray

status: Public on Dec 15 2004

city: Chicago

first: Kimberly

last: Dittmar

department: Biochemistry and Molecular Biology

institute: University of Chicago

organism:
Escherichia coli
Bacillus subtilis
Saccharomyces cerevisiae

description: The array contains probes complementary to the full length tRNAs in E. coli, B. subtilis and S. cerevisiae.  It can be used to measure tRNA amounts and tRNA charging levels after tagging of all tRNAs based on their 3' CCA by ligation with a tagging oligonucleotide.


title: NCI/LMT Hs_FCRF_ResGen

status: Public on Dec 14 2004

city: Frederick

first: Lisa

last: Gangi

address: 915 Tollhouse Ave

department: LMT-Frederick

institute: NCI

organism: Homo sapiens

description:
Printing by the NCI-Frederick/LMT Microarray Research Facility
Surface type: non-adsorptive, polylysine-coated glass
Attachment: covalent, (UV-treated polylysine)
Array description:  The custom arrays are manufactured by the NCI Frederick Laboratory of Molecular Technology Microarray Facility (NIH/NCI/SAIC/LMT).  Microarrays are printed with BioRobotics TAS II robotic arrayer from Genomic Solutions (http://www.genomicsolutions.com) that is fitted with a printhead containing 32 SMP3 printing pins from Telechem International (http://www.arrayit.com).  The human cDNA probe set is based on 9696 PCR products from Research Genetics human UniGEM 1.0 library (http://clones.invitrogen.com).  The set includes 9210 clones identifed with a public GenBank Accession; 2424 EST clusters; and 7272 "Named" clusters. The cDNA probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in 3XSSC print buffer at a concentration of 50-100 ug/ml.  The microarray spot densities are 235 microns (center-to-center), and one spot is printed per probe per slide.  The microarrays are printed on Fisher Premium microscope slides (cat# 12-544-1) coated with poly-L-lysine and post-processed according to the procedures on the NCI website http://madb.nci.nih.gov/.


title: Agilent AMADID012718

status: Public on Dec 10 2004

first: Svetlana

last: Shchegrova

institute: Agilent Technologies, Inc

description:
This design includes 1900 60-mer insitu synthesized oligonucleotides
Orientation: Barcode location: Left; Scan Side: Back
Keywords = Agilent


title: RAKE1

status: Public on Nov 01 2004

city: Philadelphia

first: Don

last: Baldwin

state: PA

address: 277 John Morgan, 3620 Hamilton Walk

department: Pathology and Lab Medicine

institute: University of Pennsylvania

organism:
Arabidopsis thaliana
Homo sapiens
Mus musculus
Rattus norvegicus

description:
Printed glass slide microarray for RNA-primed Array-based Klenow Enzyme assay. Used to detect specific miRNA target hybridization to oligo probes, without prior manipulation of the targeted microRNAs.
Keywords = microRNA
Keywords = Klenow
Keywords = biotin

first: Peter

middle: T

last: Nelson

first: Marie

last: Scearce

first: Carl

last: Oberholtzer

first: John

last: Tobias

first: Zissimos

last: Mourelatos


title: spot 1-NIA mouse 15k

status: Public on Dec 01 2004

city: Glasgow

first: Tomoko

last: Iwata

address: Beatson Laboratories, Garscube Estate, Switchback Road, Bearsden

department: Division of Cancer Sciences & Molecular Pathology

country: United Kingdom

institute: Faculty of Medicine, University of Glasgow

description:
The high-density microarray chips were prepared at the EMBL core facility by spotting the PCR products prepared from the NIA 15K mouse cDNA set (http://lgsun.grc.nia.nih.gov/).
Keywords = NIA mouse 15K

first: Concetta

last: Ambrosino

first: Ruediger

last: Klein

first: Angel

last: Nebreda


title: T. elongatus 2.5k oligoarray

status: Public on Dec 29 2004

city: Nagoya

first: Masahiro

last: Ishiura

state: Aichi

address: Furo-cho, Chikusa-ku

department: Gene Center

institute: Nagoya University

organism: Thermosynechococcus vestitus BP-1

description:
Microarray using 45-mer unmodified oligonucleotide that contains 2,397 genes (95%) of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.
Keywords = thermophilic cyanobacteria
Keywords = unmodified oligonucleotide

first: Ken-ichi

last: Kucho

first: Yuka

last: Tsuchiya

first: Yasuhide

last: Okumoto

first: Manabu

last: Harada

first: Masao

last: Yamada


title: NIH 15k clone collection/Ontario Cancer Institute

status: Public on Dec 17 2004

city: Stockholm

first: Ola

last: Larsson

department: Department of oncology-pathology

institute: Karolinska Institutet

description: NIH 15k mouse clone collection spotted by Ontario Cancer Institute


title: Struhl Lab Yeast Double Intergenic Array

status: Public on Nov 09 2004

city: Boston

first: Joseph

last: Wade

address: 240 Longwood Ave

department: BCMP

institute: Harvard Medical School

description: All Saccharomyces cerevisiae intergenic regions

first: Kevin

last: Struhl


title: CEA_SGF:ABO

status: Public on Oct 30 2004

city: Evry

first: Cyrille

last: Petat

address: 2, rue Gaston Crémieux

department: DSV/DRR

country: France

institute: CEA

description:
Chip contains 3360 features (probes and controls):
3264 PCR products from Research Genetics ORF collection
96 controls features


title: Spermophilus lateralis array Mk 1

status: Public on Nov 19 2004

city: Pacific Grove

first: Andrew

last: Gracey

institute: Stanford University

organism: Callospermophilus lateralis

description:
cDNA array for the Golden-mantled ground squirrel (Spermophilus lateralis)
Keywords = Spermophilus
Keywords = squirrel
Keywords = hibernation
Keywords = torpor

middle: Y


title: CEA_SGF:ABP

description:
Chip contains 3264 features (probes and controls):
3168 PCR products from Research Genetics ORF collection
96 controls features


title: CattleArray3800 from PyxisGenomics

status: Public on Oct 28 2004

city: Saint Paul

first: Mingqi

last: Deng

state: MN

address: 1988 Fitch Avenue

department: Veterinary and Biomedical Sciences

institute: University of Minnesota

organism: Bos taurus

description: The array elements were selected from cDNA clones derived from expressed sequence tags (ESTs) of bovine spleen and normalized placenta libraries. The ESTs representing distinct genes were determined via sequence similarity searches against human UniGene sequences using an E value of e10-5 as a threshold. The CattleArray3800 contains positive expression controls: beta actin (ACTB); phosphoglycerate kinase 1; (PGK1); hypoxanthine phosphoribosyltransferase (HPRT) and beta-2-microglobulin (B2M). Two exogenous plant genes, soy rubisco small chain 1 (RBS1) and chlorophyll ab binding protein (CAB) can be used as negative or spiking controls.

first: Mitchell

last: Abrahamsen


title: CEA_SGF:AIW

description:
Chip contains 6912 features (probes and controls):
6528 PCR products from Research Genetics ORF collection
384 controls features


title: Mouse XM microarray set

first: Mark

last: Robinson

institute: University of Toronto

description: Agilent custom 60-mer oligonucleotide arrays

first: Wen

last: Zhang

first: Quaid

middle: D

last: Morris

first: Timothy

last: Hughes


title: Canis Familiaris Brain

status: Public on Oct 14 2004

city: Raleigh

first: Erin

last: Kennerly

state: NC

institute: NCSU

organism: Canis lupus familiaris

description: Probe set derived from Canine brain EST library

first: Susanne

last: Thomson

first: Natasha

last: Olby

first: Mathew

last: Breen

first: Greg

last: Gibson


title: CGH array LUMC, 1 Mb clone set

status: Public on Oct 23 2004

city: Lisbon

first: Joana

last: Cardoso

address: Av. Prof Egaz Moniz

country: Portugal

institute: Faculty of Medicine

description: All information about this dataset is provided in the paper published in Nucleic Acid Research, 2004, "Genomic profiling by DNA amplification of laser capture microdissected tissues and array CGH", by Cardoso et al.

first: Lia

last: Molenaar

first: Renee

middle: X

last: de Menezes

first: Carla

last: Rosenberg

first: Hans

last: Morreau

first: Gabriela

last: Moslein

first: Riccardo

last: Fodde

first: Judith

middle: M

last: Boer


title: cDNA microarray quad 5000

city: Sophia Antipolis

first: Chimene

last: Moreilhon

institute: CNRS

description: cDNA home made microarray each gene is repeated four times on the slide


title: Incyte GEM1 8k

status: Public on Oct 20 2004

city: New York

first: Shixia

last: Huang

state: NY

department: Cell Biology

institute: Memorial Sloan-Kettering Cancer Center

description:
Microarray analysis reveals changes of gene expression in the evolution of mammary tumors in Wnt-1 transgenic mice
Keywords = Gene expression
Keywords = hyperplasia
Keywords = tumors
Keywords = metastasis
Keywords = Wnt-1
Keywords = Neu.

first: Yi

last: Li

first: Yidong

last: Chen

first: Katrina

last: Podspanina

first: Anne

last: Tann

first: Mario

last: Chamorro

first: Kartiki

last: Desai

first: Adam

last: Olshen

first: Jian-Ming

first: David

last: Peterson

first: Jeffery

middle: E

last: Green

first: Harold

last: Varmus


title: Mouse miRNA chip

status: Public on Oct 09 2004

city: Toronto

first: Tomas

last: Babak

institute: Best Institute

description:
We describe a method to detect miRNAs using microarrays, in which the miRNAs are directly hybridized to the array. We used this method to analyze miRNA expression across 16 mouse organs and tissues. More than half of the 78 miRNAs detected were expressed in specific adult tissues.  By comparing miRNA levels to mRNA levels determined in a parallel microarray analysis of the same tissues, we found that the expression of target mRNAs predicted on the basis of sequence similarity is biased towards the tissues in which the corresponding miRNA is expressed.

The data shown here includes data for 361 other ncRNAs as positive controls.  Probes were generated by tiling across each transcript, including 100 nucleotides of flanking sequence extracted from genomic sequence.
Keywords = miRNA mouse

first: Wen

last: Zhang

first: Quaid

last: Morris

first: Benjamin

last: Blencowe

first: Timothy

last: Hughes


title: PSU_Yeast6000_V2

status: Public on Oct 04 2004

city: University Park

first: Frank

last: Pugh

address: 452 North Frear Laboratory

institute: The Pennsylvania State University

description:
PCR amplified yeast genomic chip with ResGen Primer Pairs; Amplification as described at http://cmgm.stanford.edu/pbrown/protocols/2_DNA.html
Printed on aminosaline glass slides by the Penn State University Microarray facility
Keywords = spotted Yeast ORF

first: Sara

last: Zanton


title: ResGen GF200 for RPE

status: Public on Oct 13 2004

city: Baltimore

first: James

last: Handa

state: MD

address: 600 N. Wolfe St.

department: Wilmer Eye Institute

institute: Johns Hopkins Medical Institutes

description: ResGen GF200 membrane array


title: Mergen H05

status: Public on Sep 17 2004

city: San Leandro

first: Dan

last: Luo

address: 14826 Wicks blvd.

institute: Mergen Ltd

description: Mergen's H05 array is an oligo-based array representing 11,904 unigene human genes


title: NCH_RAT_SLK

status: Public on Oct 01 2004

city: Kyoto

first: Tadashi

last: Kadowaki

institute: Kyoto University

description:
NCH_RAT_SLK array contains about 3000 distinct cDNAs from a normalized rat kidney cDNA library.
cDNAs were spotted on the slide glass with MAS coated surface (Matsunami, Osaka, Japan) and irradiate UV for cross-linking.
Non-spotted surface was blocked with succinic anhydride.


title: Zea mays Unigene01_01_04

status: Public on Sep 01 2004

city: Wilmington

first: Ann

last: Stapleton

address: 601 S. College

department: Biological Sciences

institute: University of North Carolina Wilmington

organism: Zea mays

description: The maize Unigene I arrays fabricated by the Maize Gene Discovery Project contain 5376 ESTs (for more information, see http://www.maizegdb.org/).  Within these arrays, the cDNA samples are printed three times next to each other; consequently, average signal intensities and the ratio between co-hybridized samples could be assessed multiple times within each microarray and within experiments.  These arrays contain cDNAs recovered from libraries of mixed adult tissues (707 and 945), mixed stages of embryo development (687), and salt-stressed roots (603).


title: PFGRC Porphyromonas gingivalis 70 mer oligo array.

status: Public on Sep 09 2004

city: Rockville

first: Mark

middle: R.

last: Piercy

address: 9712 Medical Center Dr.

department: PFGRC

institute: TIGR

organism: Porphyromonas gingivalis W83

description:
Spotted long oligonucleotide array on glass.
The Porphyromonas gingivalis microarray was designed to work with Porphyromonas gingivalis strain W83. The full genome array consists of 1907 70-mer oligonucleotides that were designed based on 2083 predicted ORFs from the annotation of strain W83.
Keywords = spotted, long oligonucleotide, Porphyromonas, Porphyromonas gingivalis, gingivalis array,

first: Scott

middle: N

first: Robert

last: Fleischmann


title: E.coli_MWG_MITBioMicroCenter

city: Berkely

first: Sanchita

last: Bhattacharya

address: 1 Cyclotron Rd

institute: MIT

organism: Escherichia coli

description: The ORFs, a 50mers oligo set (MWG-Biotech Inc, High Point, NC), were spotted on Corning GAPS slides with a Biorobotics Microgrid II microarrayer. 4 X 4 print with 16 pin. Each meta grid has 18 rows and 17 columns.

first: Paolo

last: Bocazzi

first: Andrea

last: Zanzotto

first: Nicolas

last: Szita

first: Klavs

last: Jensen

first: Anthony

last: Sinskey


title: Barbry oligo 25000 nat

status: Public on Aug 26 2004

first: Chimene

last: Moreilhon

description: pangenomic oligonucleotide array


title: UBEC Array2

city: Birmingham

first: Chrystala

last: Constantinidou

department: School of Biosciences

institute: University of Birmingham

description: The 70-mer oligonucleotide array was constructed, containing 6112 oligonucleotides that sampled chromosomal genes identified in the genome sequences of E. coli strains K-12 MG1655, O157:H7 VT2 Sakai, and O157:H7 EDL933 and plasmid genes from the two genome-sequenced O157:H7 strains (the Operon Array Ready E. coli Oligonucleotide set 1.0, Qiagen- Operon, Hilden, Germany). 12 positive and 12 negative control oligonucleotides were also included. The oligonucleotides were resuspended in 3 X SSC buffer and printed on to Corning GAPS II slides (Corning B.V Life Sciences, Schiphol-Rijk, Netherlands ) using a Biorobotics Microgrid TAS array printer. Amersham Lucidea array controls (Amersham Biosciences Ltd, Little Chalfont, UK) were printed in each subarray. After printing, slides were briefly rehydrated in steam, dried at 100oC, and UV-cross-linked according to the manufacturer's instructions. Slides were stored desiccated and in the dark until use.

first: Jon

middle: L

last: Hobman

first: Charles

middle: W

last: Penn

first: Mala

last: Patel

first: Antony

last: Jones


title: 10K AgR Bovine Array

status: Public on Sep 03 2004

city: Dunedin

first: Theresa

last: Wilson

address: 710 Cumberland Street

country: New Zealand

institute: AgResearch

description: This array contains spotted PCR products from our bovine EST collection. Included are housekeeping genes, water blanks (negative PCR) and no DNA blanks (to estimate carryover).

first: John

last: McEwan

first: Alan

last: McCulloch

first: Allan

last: Crawford


title: Meltzer Array UMB 2

first: James

last: Kaper

department: Center for Vaccine Development

institute: University of Maryland School of Medicine

description: DNA Array used in Stephen Meltzer's group at University of Maryland, Baltimore

first: Neil

middle: R

last: Stokes

first: Xin

last: Zhou

first: Stephen

middle: J

last: Meltzer

middle: B


title: MSU-4_10-01

status: Public on Aug 06 2004

first: Shuang

last: Chang

department: Biology

institute: Washington University

organism: Arabidopsis thaliana

description:
Tip Configuration: Standard 48 tip
Columns per Sector: 18
Rows per Sector: 18
Column Spacing: 230
Row Spacing: 230


title: Patil et al. (2004)

status: Public on Aug 19 2004

city: San Francisco

first: Chris

last: Patil

address: 600 16th Street, N312

department: Biochemistry and Biophysics

institute: UCSF

organism: Saccharomyces cerevisiae

description: array data accompanying Patil et al. (2004)

first: Christopher

middle: K

first: Hao

last: Li

first: Peter

last: Walter