title: Arabidopsis Whole Genome Tiling Array 1-rc-4

description:
This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence.  Six chips were required to tile one strand of the genome.  This chip tiles the opposite strand of the sequence of Chromosome 3 (GenBank accession # NC_003074.2  GI:18426881) from base 8,826,801 to base 23,465,812 (end) and Chromosome 4 (GenBank accession # NC_003075.1  GI:15233324) from base 1 to base 5,087,400.
Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward( chip WGA 1-4) and opposite strand oligos ( this chip WGA 1-rc-4), so the position listed in the table is the position of base 25(5-prime to three-prime) of the opposite strand oligo.

Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.


title: Arabidopsis Whole Genome Tiling Array 1-rc-1

status: Public on Aug 20 2003

city: Palo Alto

first: Curtis

middle: J

last: Palm

state: CA

address: 855 California Ave

country: USA

institute: Stanford Genome Technology Center

organism: Arabidopsis thaliana

technology: in situ oligonucleotide

description:
This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence.  Six chips were required to tile one strand of the genome.  This chip tiles the opposite strand of the sequence of Chromosome 1 (GenBank accession # NC_003070.2  GI:18426880) from base 1 to base 19,658,475.
Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (chip WGA 1-1) and opposite strand oligos (this chip WGA 1-rc-1), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo.

Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.

distribution: custom-commercial

first: Athanasios

last: Theologis

first: Joseph

last: Ecker

first: Ronald

last: Davis


title: Arabidopsis Pilot Genome Tiling Array 1D

description:
This set of Affymetrix array tiles 5 Mb the Arabidopsis genome with a 12 bp overlap
using in situ synthesized 25 bp oligonucleotides.
Perfect match and central position mismatch probes were made for these arrays.
The position coordinates in the table refer to the begining of the 2.5 Mb chromosomal fragment that was tiled on the array.
This chip tiles the second half (1.25 MB) of both strands of the 2.5 Mb sequence of Chromosome 2 that was chosen for these pilot arrays.

Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.

first: George

last: Karlin-Neumann


title: Arabidopsis Whole Genome Tiling Array 1-1

description:
This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence.  Six chips were required to tile one strand of the genome.  This chip tiles the forward strand of the sequence of Chromosome 1 (GenBank accession # NC_003070.2  GI:18426880) from base 1 to base 19,658,475.

Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.


title: Arabidopsis Pilot Genome Tiling Array 1B

description:
This set of Affymetrix array tiles 5 Mb the Arabidopsis genome with a 12 bp overlap
using in situ synthesized 25 bp oligonucleotides.
Perfect match and central position mismatch probes were made for these arrays.
The position coordinates in the table refer to the begining of the 2.5 Mb chromosomal fragment that was tiled on the array.
This chip tiles the second half (1.25 MB) of both strands of the 2.5 Mb sequence of Chromosome 1 that was chosen for these pilot arrays.

Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.


title: Arabidopsis Whole Genome Tiling Array 1-3

description:
This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence.  Six chips were required to tile one strand of the genome.  This chip tiles the forward strand of the sequence of Chromosome 2 (GenBank accession # NC_003071.1  GI:15224037) from base 9,108,426 to base 19,643,621 (end) and Chromosome 3 (GenBank accession # NC_003074.2  GI:18426881) from base 1 to base 8,826,800.
Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward(this chip, WGA 1-3) and opposite strand oligos ( chip WGA 1-rc-3), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo.

Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.


title: Arabidopsis Whole Genome Tiling Array 1-5

description:
This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence.  Six chips were required to tile one strand of the genome.  This chip tiles the forward strand of the sequence of Chromosome 4 (GenBank accession # NC_003075.1  GI:15233324) from base 5,087,401 to base 17,549,528 (end) and Chromosome 5 (GenBank accession # NC_003076.2  GI:18426882) from base 1 to base 6,932,925.
Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (this chip, WGA 1-5) and opposite strand oligos (chip WGA 1-rc-5), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo.

Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.


title: RNA Processing

status: Public on Jun 12 2003

city: Toronto

first: Timothy

middle: Richard

last: Hughes

state: ON

address: 112 College St.

department: Banting and Best Department of Medical Research

country: Canada

institute: University of Toronto

organism: Saccharomyces cerevisiae

technology: spotted DNA/cDNA

description: Home-made polylysine substrate (J. DeRisi protocol) Hedge et al., 2000 spotting, cross-linking and blocking protocol, Virtek spotter, Stealth pins (TeleChem), 8 replicates of each spot per array, Oligonucleotide spike-in controls

distribution: non-commercial


title: Arabidopsis thaliana 26k 70-mer spotted oligoarray

status: Public on Dec 31 2007

city: Bethesda

first: Misook

last: Ha

state: MD

address: NIH

institute: National Heart Lung Blood Institute

technology: spotted oligonucleotide

first: Zengjian

last: Chen

first: Jianlin

last: Wang

first: Lu

last: Tian

first: Hyeon-Se

last: Lee

first: Ning

middle: E

last: Wei

first: Hongmei

last: Jiang

first: Brian

last: Watson

first: Andreas

last: Madlung

first: Thomas

middle: C

last: Osborn

first: R.

middle: W

last: Doerge

first: Luca

last: Comai

manufacture_protocol: This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The 70-mer oligo was designed from the 3'-end of 26,090 annotated genes.  Every 70-mer oligo is spotted once on each slide.