title: Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 02 of 12

description: The 12 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 12 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 12 arrays. This is set 02.

first: Lindsey

first: Zhen

last: Ye

first: Leonard

last: Lee

first: Keith

last: Ching

first: Christina

last: Crawford


title: Nimblegen 2.1M HD2 Human Economy tiling array of hg18 at 205bp resolution set 09 of 12

status: Public on Mar 01 2009

city: Dallas

first: Gary

middle: Chung

last: Hon

state: TX

address: 5323 Harry Hines Blvd.

department: OB/GYN

country: USA

institute: UT Southwestern

organism: Homo sapiens

technology: in situ oligonucleotide

description: The 12 genome scan arrays were based on NCBI36 build of the human genome (hg18) and contained a total of 12 * 2.1 million 50 to 75-mer oligonucleotides, positioned at about every 205 basepairs (bp) throughout the human genome. There are a total of 12 arrays. This is set 09.

distribution: custom-commercial

first: Nathaniel

middle: D

last: Heintzman

middle: C

first: David

last: Hawkins

first: Pouya

last: Kheradpour

first: Alexander

last: Stark

first: Rhona

middle: K

last: Stuart

middle: F

last: Harp

middle: A

middle: W

first: Jessica

middle: E

last: Antosiewicz

first: Hui

last: Liu

first: Xinmin

last: Zhang

first: Roland

last: Green

first: Ron

last: Stewart

first: James

last: Thomson

first: Gregory

first: Manolis

last: Kellis

first: Bing

last: Ren

manufacture_protocol: Whole human genome tiling arrays


title: UC multi-primate Nimblegen microarray 388K

status: Public on Sep 17 2008

city: Chicago

first: Ran

last: Blekhman

state: IL

institute: University of Chicago

organism:
Macaca mulatta
Pan troglodytes
Homo sapiens

technology: spotted oligonucleotide

first: Alicia

last: Oshlack

first: Adrien

last: Chabot

first: Gordon

last: Smyth

first: Yoav

last: Gilad


title: Institut Cochin HG18 60mer expression array 47K

status: Public on Sep 13 2008

city: Paris

first: Bruno

last: Borghese

address: 24, rue du Faubourg Saint-Jacques

department: Genetics and Development

country: France

institute: Institut Cochin

manufacture_protocol: see http://www.nimblegen.com/index.html


title: Nimblegen WiCell HG18 WG CGH array

status: Public on Jul 18 2008

city: Madison

first: Melodee

last: Patterson

state: WI

address: 510 Charmany Dr Ste 58 & 59

institute: WiCell

first: Karen

last: Montgomery

first: Chuhu

last: Yang

manufacture_protocol: Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis.


title: CSHL Homo Sapiens 385k oligo array 1.0

status: Public on Oct 01 2008

city: Cold Spring Harbor

first: Vladimir

last: Grubor

state: NY

address: 1 Bungtown Road

institute: Cold Spring Harbor Laboratory

first: Michael

middle: H

last: Wigler

first: Joan

last: Alexander

first: Diane

last: Esposito

first: Lakshmi

last: Muthuswami

manufacture_protocol: photolithography


title: NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (8 of 8)

status: Public on Sep 25 2007

first: Inc

last: Nimblegen Systems

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

description:
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 8 of 8  	Array 8 of 8  	chr18  	48,217,444  	76,116,688

distribution: commercial

manufacture_protocol: see manufacturer's web site


title: NimbleGen High Density CGH

status: Public on Mar 08 2008


title: NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (6 of 8)

description:
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 6 of 8  	Array 6 of 8  	chr11  	16,555,051  	134,451,854


title: NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (4 of 8)

description:
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 4 of 8  	Array 4 of 8  	chr6  	19,704,314  	170,863,129


title: NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (3 of 8)

description:
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 3 of 8  	Array 3 of 8  	chr4  	39,302,901  	191,262,464


title: NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (5 of 8)

description:
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 5 of 8  	Array 5 of 8  	chr8  	55,645,810  	146,271,383


title: NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (1 of 8)

description:
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 1 of 8  	Array 1 of 8  	chr1  	58,140  	247,189,712


title: MEEBO Mus musculus Oligo 70mer Array V1.1

status: Public on Sep 11 2008

city: San Francisco

first: Sajeev

last: Batra

state: CA

institute: UCSF

organism: Mus musculus

distribution: non-commercial

manufacturer: UCSF Center for Advanced Technology (CAT)

first: Alizadeh

last: Ash

first: Max

last: Diehn

first: Chris

last: Seidel

first: Lik

last: Mui

first: Mike

last: Hagen

first: Catherine

last: Foo

first: Jess

last: Leber

first: David

last: Erle

first: Jean

first: Andrea

last: Barczak

first: Derisi

last: Joesph

first: Jing

last: Zhu

first: Pat

last: Brown

first: Kate

last: Rubins

first: Stephen

last: Popper

first: Joesph

last: Marquis

last: Fero

first: John

last: Coller

first: Peng

last: Zhang

first: Niki

last: Chin

first: Elena

last: Seraia

last: Pollack

first: Young

last: Kim

first: Terri

last: Gaasterland

first: Ben

last: Snyder

first: Alexey

last: Novoradovsky

first: Mihaela

last: Zavolan

manufacture_protocol: Oligos are arrayed in Genetix x7020 384-well plates.  Each well contains 200pmol of 70-mer oligo.  During the first round of resuspension, oligos were resuspended in 3XSSC to a final concentration of 30 micromolar.  After each print, oligos are dried in a vacuum centrifuge.  During subsequent prints, oligos are resuspended in water to a final concentration of 30 micromolar taking into consideration the amount of oligo printed in the previous printrun.  Oligos are printed using 48 Parallel Synthesis silicon 50 micrometer printing tips on a DeRisi-style custom built microarrayer.  A sector width of 28 and a spacing of 155 microns is employed.


title: Human tiling array using Nimblegen platform, set 35 of 38

status: Public on Jun 29 2005

city: San Diego

first: Chunxu

last: Qu

department: Gene Regulation

institute: Ludwig Institute for Cancer Research

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 35.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab

first: Tae

first: Leah

middle: O

last: Barrera

first: Ming

first: Michael

last: Singer

first: Todd

last: Richmond

first: Yingnian

last: Wu

first: Roland

last: Green

first: Bing

last: Ren


title: Human tiling array using Nimblegen platform, set 37 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 37.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Set 9 of 38 - Whole genome ChIP/chip tiling of human ES cells for H3K4me3 and H3K27me3

status: Public on Sep 14 2007

first: Victor

last: Ruotti

address: 425 Henry Mall

department: Biotechnology

institute: UW Madison

description: 38 chip array set covering the non-repetitive portion of the human genome (14.5 million features). Resolution 100bp (50bp probe and 50bp gap).

first: Guangjin

last: Pan

first: Shulan

last: Tian

first: Jeff

last: Nie

first: Chuhu

last: Yang

first: Hairong

last: Wei

first: Gudrun

last: Jonsdottir

first: Ron

last: Stewart

first: James

last: Thomson

manufacture_protocol: Maskless array synthesis of tiling arrays. See Nimblegen.com for more information.


title: Set 8 of 38 - Whole genome ChIP/chip tiling of human ES cells for H3K4me3 and H3K27me3


title: Set 7 of 38 - Whole genome ChIP/chip tiling of human ES cells for H3K4me3 and H3K27me3


title: Human tiling array using Nimblegen platform, set 38 of 38

first: Chunxu

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 38.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab

first: Tae

last: Kim

last: Zhang


title: NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (7 of 8)

first: Inc

last: Nimblegen Systems

description:
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 7 of 8  	Array 7 of 8  	chr14  	24,717,751  	106,359,463


title: Human tiling array using Nimblegen platform, set 34 of 38

last: Qu

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 34.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab

first: Leah

last: Barrera

first: Ming

first: Michael

last: Singer


title: Human promoter regions using Nimblegen platform

description:
High density oligonucleotide array of Nimblegen.  A condensed array used to verify the results from genome scan arrays.  It includes 9966 putative TAF1 bindinf sequences plus 29 control genomic loci, selected from the ENCODE regions, each ranging from 500 Kbp to 1.9Mbp at 100bp resolution.
Keywords = Nimblegen, human tiling array, LICR renlab

first: Todd

last: Richmond

first: Yingnian

last: Wu

first: Roland

last: Green


title: Human tiling array using Nimblegen platform, set 32 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 32.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab

first: Bing

last: Ren


title: Human tiling array using Nimblegen platform, set 31 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 31.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Nimblegen human 5K promoter array 2

status: Public on Aug 14 2006

city: Columbus

first: Victor

middle: X

last: Jin

state: OH

address: 333 West 10th Ave

department: Biomedical Informatics

institute: OSU Medical Center

manufacture_protocol: as described in http://www.nimblegen.com/products/chip/index.html


title: ISB yeast intergenic 4002-5225

status: Public on Apr 20 2007

city: Seattle

first: Jennifer

middle: Joy

last: Smith

state: WA

address: 1441 North 34th Street

institute: Institute for Systems Biology

organism: Saccharomyces cerevisiae

technology: spotted DNA/cDNA

middle: J

first: John

last: Aitchison

first: Bruz

last: Marzolf

manufacture_protocol:
MIAME platform type: spotted
MIAME availability: Arrays printed at ISB can be purchased, contact bmarzolf@systemsbiology.org for information.
Standard Operating Procedures for the Virtek(ESI) Spotter
*** Always remember that spotter pins are extremely fragile at the tips ***
To make spotter source plates:
1. Total volume should be 4-8 ul
2. Usually, DNA should be in 3X SSC and 1.5M betaine. This can be done most accurately be putting an appropriate amount of source material in spotting plates, then drying down with the speedvac and resuspending in the final volume of 3X SSC, 1.5M betaine.
Things not to do:
1. Move slides after printing starts ? just touching a slide can shift it and other slides enough to ruin the grid geometry.
2. Use air to blow dust off of slides - you could move the slides
3. Press the RED EMERGENCY button if it's not a emergency- this will turn off the spotter controller and abort the entire run
4. Use PCR products that have been purified, then dried down and resuspended in a very small volume, this is known to cause erratic surface tension and cause spots to run together.
When starting a new print run:
1. Allow blank slides to sit at 65% humidity for 24 hours
2. Renew sticky mat if it's dirty
3. Fill humidifier and turn on
4. Pull water out of water bath, wipe out bath and fill reservoir to get bath back to correct level- IT IS EXTREMELY IMPORTANT NOT TO OVERFILL THE WATERBATH OR SONICATOR BATH, WATER SHOULD BE JUST ABOVE THE POINT WHERE CUT RUNNING UP THE PIN ENDS
5. Place slides on the deck with label on the right-hand side. Secure slides by using spacer glass slides held in place with the magnets at the end of the platform.
6. Measure total X and Y distances spanned by slides, enter sizes under Calibration for Arraying->Slides
7. Print one "dip" with no source plate to ensure that pins are hitting all slides in the same plate (slight errors in Y direction especially can really throw off grid locations.)
8. Use the metal brace and spacer slides held by magnets to stabilize and line up the slides
9. Stabilize humidity at approximately 65%
10. Put blotting slide in place
To print slides:
1. Spin down 4 source plates at 2000 rpm for one minute
2. Put three remaining source plates (in order) at 4 C
3. Check blotting slide for blocked pins, change slide. Remove clogged/sticking pins and try to remedy by cleaning pin and/or printhead hole. If a pin isn't spotting on the blotter, it may just not be contacting the blotter.see if it's been spotting on actual slides.
4. Change water bath water at beginning of run.
5. Check level of water reservoir and sonicator bath- add water if necessary
6. Check humidity
7. Double-check orientation and number of source plate
8. Press operator button
9. Re-seal old plate and put in cold room
10. Set timer
11. Check old plate out, new plate in on printing checklist
When finished printing for the day:
1. Seal all plates and place in cold room
2. Turn off Spotter light
3. Turn monitor off
4. Leave computer ON
When finished with entire printing:
1. Allow spotter humidity to slowly drop and slides dry out.
2. Remove slides and place into plastic Telechem slide boxes.
3. Turn off Spotter light
4. Turn off fan/humidifier
5. Place boxes in desiccator at least 12 hours.
6. Blow off slides in boxes, then bake at 85 C for 2 hours.
7. Etch numbers and corners on slides (corners on back side), blow dry and place in desiccator ready for prehyb.
Things to do periodically:
1. Just keep an eye on the slides themselves to see if the grids are being formed as expected
To clean a clogged pin:
1. Remove pin by pulling out from top with a small forceps.
2. Dip in water and blow dry with air tip, repeatedly if necessary.
3. Make sure water reservoir is sufficiently full - low water often causes clogging.
Random experiments that we have tried and their results:
1. Effect of Temperature and Humidity on Spot Size
Printed H-70 in 3X SSC onto Telechem Amine slides. Temperatures chosen were 18 C, 20 C, 22 C, and humidities of 40%, 50%, 60% resulting in 9 different conditions. Hybridization was with labeled PCR primer for 3 hours.
Results: Differences were seen in specific grids, but grid-grid variability was too high to establish a conclusive pattern. Spots generally were most intense in a 90-100 micron diameter, then had a lighter "halo" that could extend to 130-150 microns. It appeared that "Halo" size was often smallest at 18 C, 130-140 microns. We decided to print at ambient temperature, generally 18-20 C.
2. Effect of Volume and Humidity on Maximum Spots per Dip
Pooled 96 wells of purified PCR product and added SSC for a final concentration of 3X. Then set up a plate so that 8 pins would print 1ul, another 8 would print 2ul, 4ul, 6ul, 8ul and 10ul. This 48-pin dip was then printed 25 spots in the Y direction, across 10 plain glass slides for a total of 250 spots. This print was done with increasing indent at 75%, 70%, 65%, 60% and 55% humidity.
Results: At 1-2ul, pins ran out of juice at 25-50 spots at all humidities. At 4ul, 200-225 spots could be printed at 65% or higher humidity. With 6ul or more, 250 spots could be printed at 65% or higher humidity. Based upon this, we chose 65% humidity for all printing.
Halobacterium Flip Chips: This print is outdated
Use 24 pins (4Y by 6X), 16Y by 16X grids at 200 micron spot-spot spacing.
Plate order: 1-7, Control, Control(rotated), 7(rot), 6(rot), 5(rot), 4(rot), 3(rot), 2(rot), 1(rot)
Typical number of slides printed: 36 (strange layout used to get 2 identical "supergrids" limited to 2 columns of 18)
This layout uses the same "2 supergrid" layout as Yeast, except that there are not duplicates located directly next to each other. Instead, after the plates have been printed normally, they are printed in reverse order and rotated, placing duplicates in a supergrid in exact opposite corners.


title: MEEBO Mus musculus Oligo 70mer Array V1.0

status: Public on May 23 2007

first: Sajeev

last: Batra

first: Alizadeh

last: Ash

first: Max

last: Diehn

first: Chris

last: Seidel

first: Lik

last: Mui

first: Mike

last: Hagen

first: Catherine

last: Foo

first: Jess

last: Leber

first: David

last: Erle

first: Jean

last: Yang

first: Andrea

last: Barczak

first: Derisi

last: Joesph

first: Jing

last: Zhu

first: Pat

last: Brown

first: Kate

last: Rubins

first: Stephen

last: Popper

first: Joesph

last: Marquis

last: Fero

last: Coller

first: Peng

first: Niki

last: Chin

first: Elena

last: Seraia

last: Pollack

first: Young

first: Terri

last: Gaasterland

first: Ben

last: Snyder

first: Alexey

last: Novoradovsky

first: Mihaela

last: Zavolan


title: UC Davis Human ENCODE array

status: Public on Sep 01 2006

first: Victor

last: Jin

manufacture_protocol: as described in http://www.nimblegen.com/products/chip/new_designs.html


title: ISB yeast intergenic 3695-3719

first: Jennifer

last: Smith

first: John

last: Aitchison

first: Bruz

last: Marzolf


title: Human tiling array using Nimblegen platform, set 36 of 38

first: Chunxu

last: Qu

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 36.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab

first: Tae

last: Kim

first: Leah

last: Barrera

first: Ming

last: Zhang

first: Michael

last: Singer

first: Todd

last: Richmond

first: Yingnian

last: Wu

first: Roland

last: Green

first: Bing

last: Ren


title: Human tiling array using Nimblegen platform, set 30 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 30.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: ENCODE NimbleGen hg17_04252005 tiling array

status: Public on Mar 09 2006

city: Calgary

first: Mark

last: Bieda

state: AB

address: 3330 Hospital Dr NW

department: Biochemistry and Molecular Biology

country: Canada

institute: University of Calgary

first: Shally

last: Xu

first: Peggy

last: Farnham

manufacture_protocol: see NimbleGen website


title: NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (2 of 8)

first: Inc

last: Nimblegen Systems

description:
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 2 of 8  	Array 2 of 8  	chr2  	137,780,301  	242,697,810


title: Human tiling array using Nimblegen platform, set 33 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 33.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 29 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 29.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 23 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 23.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 24 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 24.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 27 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 27.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 28 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 28.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 25 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 25.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: HG17_Human_60mer_1in2

status: Public on Apr 01 2008

city: Miami

first: Maria

middle: Eugenia

last: Figueroa

state: FL

address: 1501 NW 10th Ave, BRB 709A, Locator code C227

department: Human Genetics

institute: University of Miiami

first: Ari

middle: M

last: Melnick

last: Greally

manufacture_protocol: See Roche NimbleGen website


title: Human tiling array using Nimblegen platform, set 22 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 22.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 21 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 21.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 16 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 16.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 19 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 19.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 20 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 20.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 17 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 17.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 07 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 7.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 13 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 13.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 14 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 14.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 8 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 8.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 15 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 15.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 6 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 6.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 18 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 18.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 10 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 10.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 12 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 12.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 2 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 2.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 4 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 4.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 3 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 3.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Human tiling array using Nimblegen platform, set 26 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 26.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab


title: Yeast Splicing/Expression Chip v6

status: Public on Jun 13 2005

city: Santa Cruz

last: Burckin

address: 1156 High Street

department: Molecular, Cell, & Developmental Biology

institute: University of California Santa Cruz

description:
This is an oligonucleotide microarray designed to measure splicing and expression in yeast.  Each intron containing gene has 3 features (Splice Junction, Intron, Exon2).  The SJ oligo symmetrically spans the splice junction with 20nt on each side.  The SJ, Int, and Ex2 oligos are custom designed 40-mers.  The array also contains the Operon Yeast Genome 70-mer Set.  All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed twice each.
Keywords = Splicing and Expression

first: Tyson

last: Clark

first: Charles

last: Sugnet

first: Manuel

last: Ares

last: Nagel

first: Trevino

last: Lisa


title: Human tiling array using Nimblegen platform, set 5 of 38

first: Chunxu

last: Qu

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 5
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab

first: Tae

last: Kim

first: Leah

last: Barrera

last: Zhang

last: Singer

last: Richmond


title: Human tiling array using Nimblegen platform, set 11 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 11.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab

first: Ming

first: Michael

first: Todd

last: Wu

last: Green

last: Ren


title: Human tiling array using Nimblegen platform, set 9 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 9.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab

first: Yingnian

first: Roland

first: Bing


title: Human tiling array using Nimblegen platform, set 1 of 38

description:
High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16.  There are a total of 38 arrays.  This is set 1.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab