title: Agilent-014834 Human Whole Genome ChIP-on-Chip Set 244K - 17 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 17 of 25

Arrays of this design have barcodes that begin with 16014834 or 2514834.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9654.


title: Agilent-014833 Human Whole Genome ChIP-on-Chip Set 244K - 16 of 25 (Feature Number version)

status: Public on Nov 12 2009

city: Palo Alto

last: Agilent Technologies

state: CA

country: USA

institute: Agilent Technologies

organism: Homo sapiens

technology: in situ oligonucleotide

description:
Human Whole Genome ChIP-on-Chip Set 244K, 16 of 25

Arrays of this design have barcodes that begin with 16014833 or 2514833.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9653.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-014832 Human Whole Genome ChIP-on-Chip Set 244K - 15 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 15 of 25

Arrays of this design have barcodes that begin with 16014832 or 2514832.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9652.


title: Agilent-014829 Human Whole Genome ChIP-on-Chip Set 244K - 12 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 12 of 25

Arrays of this design have barcodes that begin with 16014829 or 2514829.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9649.


title: Agilent-014828 Human Whole Genome ChIP-on-Chip Set 244K - 11 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 11 of 25

Arrays of this design have barcodes that begin with 16014828 or 2514828.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9648.


title: Agilent-014827 Human Whole Genome ChIP-on-Chip Set 244K - 10 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 10 of 25

Arrays of this design have barcodes that begin with 16014827 or 2514827.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9647.


title: Agilent-014830 Human Whole Genome ChIP-on-Chip Set 244K - 13 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 13 of 25

Arrays of this design have barcodes that begin with 16014830 or 2514830.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9650.


title: Agilent-014826 Human Whole Genome ChIP-on-Chip Set 244K - 9 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 9 of 25

Arrays of this design have barcodes that begin with 16014826 or 2514826.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9646.


title: Agilent-029830 Human Genome CGH + SNP Microarray (Feature Number version)

status: Public on Dec 27 2010

description:
029830_D_20100817

ISCA plus CGH+SNP 180K Microarray

Arrays of this design have barcodes that begin with 16029830 or 2529830.

Orientation:
Features are numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Agilent-014825 Human Whole Genome ChIP-on-Chip Set 244K - 8 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 8 of 25

Arrays of this design have barcodes that begin with 16014825 or 2514825.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9645.


title: Agilent-020097 E. coli Gene Expression Microarray (Feature Number version)

status: Public on Apr 01 2011

organism:
Escherichia coli O157:H7 str. EDL933
Escherichia coli CFT073
Escherichia coli O157:H7 str. Sakai
Escherichia coli str. K-12 substr. MG1655

description:
E. coli (K12-MG1655, CFT073, O157-H7 EDL933, O157-H7 VT2-Sakai) Oligo Microarray

Arrays of this design have barcodes that begin with 16020097 or 2520097.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL13359.


title: Agilent-014824 Human Whole Genome ChIP-on-Chip Set 244K - 7 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 7 of 25

Arrays of this design have barcodes that begin with 16014824 or 2514824.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9644.


title: Agilent-014819 Human Whole Genome ChIP-on-Chip Set 244K - 2 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 2 of 25

Arrays of this design have barcodes that begin with 16014819 or 2514819.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9639.


title: Agilent-014822 Human Whole Genome ChIP-on-Chip Set 244K - 5 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 5 of 25

Arrays of this design have barcodes that begin with 16014822 or 2514822.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9642.


title: Agilent-014821 Human Whole Genome ChIP-on-Chip Set 244K - 4 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 4 of 25

Arrays of this design have barcodes that begin with 16014821 or 2514821.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9641.


title: Agilent-015340 Mouse Whole Genome ChIP-on-Chip Set 244K - 22 of 25 (Feature Number version)

organism: Mus musculus

description:
Arrays of this design have barcodes that begin with 16015340 or 2515340.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9606.


title: Agilent-015339 Mouse Whole Genome ChIP-on-Chip Set 244K - 21 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015339 or 2515339.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9605.


title: Agilent-015344 Mouse Whole Genome ChIP-on-Chip Set 244K - 25 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015344 or 2515344.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9609.


title: Agilent-015343 Mouse Whole Genome ChIP-on-Chip Set 244K - 24 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015343 or 2515343.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9608.


title: Agilent-015341 Mouse Whole Genome ChIP-on-Chip Set 244K - 23 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015341 or 2515341.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9607.


title: Agilent-014831 Human Whole Genome ChIP-on-Chip Set 244K - 14 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 14 of 25

Arrays of this design have barcodes that begin with 16014831 or 2514831.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9651.


title: Agilent-015336 Mouse Whole Genome ChIP-on-Chip Set 244K - 19 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015336 or 2515336.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9603.


title: Agilent-015337 Mouse Whole Genome ChIP-on-Chip Set 244K - 20 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015337 or 2515337.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9604.


title: Agilent-015333 Mouse Whole Genome ChIP-on-Chip Set 244K - 16 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015333 or 2515333.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9600.


title: Agilent-015334 Mouse Whole Genome ChIP-on-Chip Set 244K - 17 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015334 or 2515334.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9601.


title: Agilent-015332 Mouse Whole Genome ChIP-on-Chip Set 244K - 15 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015332 or 2515332.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9599.


title: Agilent-015330 Mouse Whole Genome ChIP-on-Chip Set 244K - 14 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015330 or 2515330.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9598.


title: Agilent-015328 Mouse Whole Genome ChIP-on-Chip Set 244K - 12 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015328 or 2515328.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9596.


title: Agilent-015335 Mouse Whole Genome ChIP-on-Chip Set 244K - 18 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015335 or 2515335.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9602.


title: Agilent-015327 Mouse Whole Genome ChIP-on-Chip Set 244K - 11 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015327 or 2515327.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9595.


title: Agilent-015325 Mouse Whole Genome ChIP-on-Chip Set 244K - 10 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015325 or 2515325.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9594.


title: Agilent-015329 Mouse Whole Genome ChIP-on-Chip Set 244K - 13 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015329 or 2515329.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9597.


title: Agilent-015323 Mouse Whole Genome ChIP-on-Chip Set 244K - 9 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015323 or 2515323.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9593.


title: Agilent-021193 Canine (V2) Gene Expression Microarray (Feature Number version)

status: Public on May 17 2011

organism: Canis lupus familiaris

description:
C. familiaris (Dog) Oligo Microarray (V2)

Arrays of this design have barcodes that begin with 16021193 or 2521193.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-015321 Mouse Whole Genome ChIP-on-Chip Set 244K - 8 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015321 or 2515321.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9592.


title: Agilent-015313 Mouse Whole Genome ChIP-on-Chip Set 244K - 4 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015313 or 2515313.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9588.


title: Agilent-015319 Mouse Whole Genome ChIP-on-Chip Set 244K - 6 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015319 or 2515319.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9590.


title: Agilent-015317 Mouse Whole Genome ChIP-on-Chip Set 244K - 5 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015317 or 2515317.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9589.


title: Agilent-015320 Mouse Whole Genome ChIP-on-Chip Set 244K - 7 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015320 or 2515320.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9591.


title: Agilent-015312 Mouse Whole Genome ChIP-on-Chip Set 244K - 3 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015312 or 2515312.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9587.


title: Agilent-015311 Mouse Whole Genome ChIP-on-Chip Set 244K - 2 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015311 or 2515311.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9586.


title: Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Feature Number version)

status: Public on Oct 27 2011

organism: Rattus norvegicus

description:
SurePrint G3 Rat GE 8x60K Microarray

Arrays of this design have barcodes that begin with 16028279 or 2528279.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL15084 (Probe Name version)


title: Agilent-020186 C. elegans (V2) Gene Expression Microarray (Feature Number version)

status: Public on Mar 02 2010

organism: Caenorhabditis elegans

description:
Caenorhabditis elegans (Nematode) Oligo Microarray

Arrays of this design have barcodes that begin with 16020186 or 2520186.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL11346


title: Agilent-023647 B. taurus (Bovine) Oligo Microarray v2 (Feature Number version)

status: Public on Jan 24 2011

organism: Bos taurus

description:
B. taurus (Bovine) Oligo Microarray v2

Arrays of this design have barcodes that begin with 16023647 or 2523647.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL11649.


title: Agilent-015068 Chicken Gene Expression Microarray 4x44k (Feature Number version)

status: Public on Jun 25 2009

organism: Gallus gallus

description:
Gallus gallus (Chicken) Oligo Microarray by Agilent Technologies

Arrays of this design have barcodes that begin with 16015068 or 2515068.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL13820.


title: Agilent-015061 C. elegans Oligo Microarray 4x44K G2519F (Feature Number version)

status: Public on Dec 02 2008

description:
This microarray provides genome-wide coverage of C. elegans with over 21,000 predicted genes from WormBase, a public C. elegans genome database.

Arrays of this design have barcodes that begin with 16015061 or 2515061.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL8209


title: CCDTM miRNA850-version 4

status: Public on Jul 24 2008

city: Doha

first: Francesco

middle: Maria

last: Marincola

address: Al Nasr Tower, AL Corniche Street, PO Box 26999

country: Qatar

institute: Sidra Medical and Research Center

organism:
Homo sapiens
Mus musculus
Rattus norvegicus
Human gammaherpesvirus 8
Macacine gammaherpesvirus 4
Betapolyomavirus macacae

technology: spotted oligonucleotide

description: This is a full representation of the condensed array in Platform GPL8949.

distribution: non-commercial

manufacturer: NIH Clinical Center, Dept. of Transfusion Medicine, Immunogenetics Section (NIH/CC/DTM)

relation:
Affiliated with: GPL8794
Affiliated with: GPL8949
Affiliated with: GPL16414

manufacture_protocol: Oligos sythesized by Operon with 3' amine modification and purified by desalting. Oligos are adjusted to the same concentration and resuspend in 2mM phosphate buffer at 25mM oligo concentration and spotted on CodeLink(TM) Activated Slides (GE Healthcare) using an Omnigrid robotic arrayer (Genomic Solutions).


title: Agilent-015060 Magnaporthe grisea 2.0 4 X 44K (Feature Number version)

status: Public on Sep 16 2009

organism: Pyricularia grisea

description:
This Magnaporthe grisea 2.0 microarray contains oligos designed after 15,170 predicted Magnaporthe genes and transcripts from the newly annotated data set at the Fungal Genomics Laboratory at North Carolina State University.

Arrays of this design have barcodes that begin with 16015060 or 2515060.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-016061 QIMR Schistosoma 44k v 1.0

status: Public on Aug 14 2008

city: Brisbane

first: Geoffrey

last: Gobert

address: 300 Herston Rd

country: Australia

institute: QIMR

organism:
Schistosoma japonicum
Schistosoma mansoni

first: Donald

last: McManus

manufacture_protocol: Agilent


title: Agilent-015072 Yeast Oligo Microarray 4x44K G2519F (Feature Number version)

status: Public on Oct 30 2008

organism: Saccharomyces cerevisiae

description:
This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, response to drug candidates and reproduction.

Arrays of this design have barcodes that begin with 16015072 or 2515072.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9294


title: Agilent-015310 Mouse Whole Genome ChIP-on-Chip Set 244K - 1 of 25 (Feature Number version)

description:
Arrays of this design have barcodes that begin with 16015310 or 2515310.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9585.


title: AB SOLiD System 3.0 (Homo sapiens)

status: Public on Oct 13 2009

last: GEO

technology: high-throughput sequencing

distribution: virtual


title: UNIL_fireant_25K_vE1.0

status: Public on Jun 06 2008

city: Lausanne

first: John

last: Wang

address: Batiment Biophore

department: Department of Ecology and Evolution

country: Switzerland

institute: University of Lausanne

organism: Solenopsis invicta

technology: spotted DNA/cDNA

manufacturer: UNIL: Laurent Keller Laboratory and DAFL

first: Laurent

last: Keller

manufacture_protocol:
Bacteria clones were inoculated into PCR plates containing 5 µl modified LB-ampicillin broth (20% concentration LB and without NaCl) and grown overnight. Plasmid inserts were amplified by PCR after adding 95 µl of PCR mix. A single primer, SMART PCR primer 5’-AAGCAGTGGTATCAACGCAGAGT-3’, which matches both the 3’ and 5’ SMART adapter of the inserts was used. PCR mixes contained 0.4 µl 5U/µl TAQ (Qiagen), 10 µL 10x Qiagen buffer, 20 µl Q solution, 4 µl 25 mM MgCl2, 1.5 µl 25 mM dNTPs, and 1 µl 100 µM SMART PCR primer. An initial 9-min denaturation at 94 °C was followed by 40 cycles of 30 sec at 94°C, 30 sec at 59°C, and 3 min at 72°C. The reaction ended with an additional incubation of 7 min at 72°C. Two microliters of each PCR product were analyzed on a 1% agarose gel. Gel pictures were visually examined to classify all PCR products as follows: “strong single band” (78.4 %), “no band” (3.9 %), or “weak or multiple bands” (17.5 %). This data is in Supplemental Table F (http://fourmidable.unil.ch/).
PCR products were purified by a standard NaOAc/ethanol precipitation, resuspended in 30 µl water and transferred into duplicate 384-well plates using a Biomek FX liquid-handling robot (Beckman Coulter). Then PCR products were dried and resuspended in 20 µL 3x SSC, 1.5 M betaine. We also resuspended 48 times 10 commercial exogenous controls (SpotReport Alien cDNA Array Validation System, Stratagene) in 3x SSC, 1.5 M betaine, one set for each subgrid of the microarray. Microarrays were printed on aldehydesilane-coated slides (NexterionTM Slide AL, Schott Nexterion), using an OmniGrid 300 spotting robot (GeneMachines). Spot and printing quality were assessed visually under a dissecting microscope after printing. While a few slides had minor defects (e.g., a few spots missing or damaged by dust particles), the majority of slides exhibited no defects. DNA was crosslinked to slides by baking at 80°C for 1 h. Afterwards, the slides were post-processed with NaBH4 using the manufacturers recommended protocol.


title: Agilent-015424 S. pombe Whole Genome ChIP-on-Chip Microarray 4x44K (Feature Number version - - A_93_Pnnnn probes)

status: Public on Jan 14 2008

organism: Schizosaccharomyces pombe

description:
S. pombe Whole Genome ChIP-on-Chip Microarray 4x44K

Arrays of this design have barcodes that begin with 16015424 or 2515424.

The ID column represents the Agilent Feature Extraction feature number.

This platform is an alternative to GPL16218, which includes probe names prefixed with A_86_Pnnnnnnnn. This platform's probe names are prefixed A_93_Pnnnnnnnn.

relation:
Alternative to: GPL16218
Alternative to: GPL16235


title: Agilent-020908 Oryctolagus cuniculus (Rabbit) Oligo Microarray (Feature Number version)

status: Public on Jul 22 2008

organism: Oryctolagus cuniculus

description:
O. cuniculus (Rabbit) Oligo Microarray

Arrays of this design have barcodes that begin with 16020908 or 2520908.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-014816 Drosophila Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 2 (G4495A) (Feature Number version)

status: Public on Aug 17 2006

organism: Drosophila melanogaster

description:
Drosophila Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 2

Arrays of this design have barcodes that begin with 16014816 or 2514816.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-014817 Drosophila Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 2 (G4495A) (Feature Number version)

description:
Drosophila Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 2

Arrays of this design have barcodes that begin with 16014817 or 2514817.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version)

status: Public on Mar 10 2010

description:
SurePrint G3 Human CGH Microarray 4x180K

Arrays of this design have barcodes that begin with 16022060 or 2522060.

Data table annotations based on build hg18:NCBI36:Mar2006.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number. A different version of this platform with the Agilent Probe Names in the ID column is assigned accession number GPL10150.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-014716 Mouse Promoter ChIP-on-Chip Set 244K, Microarray 1 of 2 (G4490A) (Feature Number version)

description:
Mouse Promoter ChIP-on-Chip Set 244K 1 of 2

Arrays of this design have barcodes that begin with 16014716 or 2514716.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14573.

relation: Alternative to: GPL14573 (Probe Name version)


title: Agilent-014717 Mouse Promoter ChIP-on-Chip Set 244K, Microarray 2 of 2 (G4490A) (Feature Number version)

description:
Mouse Promoter ChIP-on-Chip Set 244K 2 of 2

Arrays of this design have barcodes that begin with 16014717 or 2514717.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

***** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14597.

relation: Alternative to: GPL14597 (Probe Name version)


title: Agilent-018972 D. melanogaster (FruitFly) Oligo Microarray 4x44K G2519F (Feature Number version)

status: Public on Jan 17 2008

description:
Agilent has developed a genome-wide fruit fly microarray to enable scientists to study gene expression profiling at the global level and enhance our understanding of fruit fly biology and gene functions.

Arrays of this design have barcodes that begin with 16018972 or 2518972.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7300.


title: Agilent-014706 Human Promoter ChIP-on-Chip Set 244K, Microarray 1 of 2 G4489A (Feature Number version)

description:
Human Promoter ChIP-on-Chip Set 244K 1 of 2

Arrays of this design have barcodes that begin with 16014706 or 2514706.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-014707 Human Promoter ChIP-on-Chip Set 244K, Microarray 2 of 2 G4489A (Feature Number version)

description:
Human Promoter ChIP-on-Chip Set 244K 2 of 2

Arrays of this design have barcodes that begin with 16014707 or 2514707.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-015279 Mouse CpG Island ChIP-on-Chip Microarray 2x105K  (Feature Number version)

status: Public on Dec 31 2008

description:
Mouse CpG Island ChIP-on-Chip Microarray 2x105K
Enriched content sourced from UCSC mm8, NCBI build 36 (February 2006)
16,030 CpG islands
97,652 probes in or within 95bp of CpG Islands
2 x 105K slide format printed using Agilent's 60-mer SurePrint technology
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL10324.


title: Agilent-013328 Rat Oligo Microarray (V2) G4130B (Feature Number version)

status: Public on Sep 24 2005

description:
This microarray contains representative sequences derived from rat RefSeq, high-quality public rat mRNA accessions, homologs to human and mouse RefSeq, EST clusters determined by a leading biopharmaceutical company and the Incyte Zooseq database as well as toxicology markers determined by the National Institute of Environmental Health Sciences (NIEHS) and others. Many of the toxicology markers used in the design of this microarray were released to the public domain for the first time and will be used on this unique microarray product.

Arrays of this design have barcodes that begin with 16013328 or 2513328.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7292.


title: Agilent-013223 D. rerio (Zebrafish) Oligo Microarray G2518A Option 001 (Feature Number version)

organism: Danio rerio

description:
Agilent has developed a genome-wide zebrafish microarray to enable scientists to study gene expression profiling at the global level and enhance our understanding of zebrafish biology and gene functions related to mammalian models.

Arrays of this design have barcodes that begin with 16013223 or 2513223.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7244.


title: Agilent-019161 D. rerio (Zebrafish) Oligo Microarray (V2) G2519F (Feature Number version)

status: Public on Feb 05 2008

description:
Agilent has developed a genome-wide zebrafish microarray to enable scientists to study gene expression profiling at the global level and enhance our understanding of zebrafish biology and gene functions related to mammalian models.

Arrays of this design have barcodes that begin with 16019161 or 2519161.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7301.


title: Agilent-013324 Arabidopsis 2 Oligo Microarray (V2) G4136B (Feature Number version)

organism: Arabidopsis thaliana

description:
The content on this microarray is derived from the ATH1 v. 3 database of The Institute for Genomic Research (TIGR) and represents 21,500 genes. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses.  Replaces 011839, G4136A

Arrays of this design have barcodes that begin with 16013324 or 2513324.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7290.


title: Agilent-014791 Human CpG Island ChIP-on-Chip Microarray 244K (G4492A) (Feature Number version)

organism: Homo sapiens

description:
Human CpG Island Chip-on-Chip Set 244K

Arrays of this design have barcodes that begin with 16014791 or 2514791.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9767.


title: Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version)

description:
The content on this microarray is derived from the ATH1 v.5 database of The Institute for Genomic Research (TIGR) and from the Arabidopsis MPSS database at the University of Delaware.  Nearly 40,000 features represents 28,500 genes from TIGR and more than 10,000 unannotated transcripts from University of Delaware. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses.

Arrays of this design have barcodes that begin with 16012600 or 2512600.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7270.


title: Agilent-012756 Magnaporthe Grisea V2 Oligo Microarray G4137B (Feature Number version)

description:
This Magnaporthe grisea 2.0 microarray contains oligos designed after 15,170 predicted Magnaporthe genes and transcripts from the newly annotated data set at the Fungal Genomics Laboratory at North Carolina State University. Included are annotations from the Whitehead Institute at the Massachusetts Institute of Technology. This microarray also contains 6,325 probes designed after ESTs of rice genes.

Arrays of this design have barcodes that begin with 16012756 or 2512756.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7271.


title: Agilent-011871 Human 1B Microarray G4111A (Feature Number version)

status: Public on Jan 02 2004

description:
Consisting of highly-sensitive 60-mer oligonucleotide probes that target human genes present in Incyte LifeSeq Foundation partial sequence database, the Agilent Human 1B Oligo Microarray Kit queries more rare human transcripts where full-length information is not available. The microarray is fully annotated to allow customers to access public or Incyte LifeSeq databases for additional bioinformatics data about the genes.

Arrays of this design have barcodes that begin with 16011871 or 2511871.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7263.


title: Agilent-015354 Bovine Oligo Microarray (4x44K) (Feature Number version)

status: Public on Jul 07 2009

description:
B. taurus Oligo Microarray

Agilent has developed a genome-wide bovine microarray to enable scientists to study gene expression profiling at the global level. Agilent's Bovine Oligo – 4X44K microarray covers 21,475 unique genes and transcripts of Bos Taurus, two probes for each gene are produced. Oligonucleotides, 60-mers, are synthesized directly on glass slide using the Agilent’s SurePrint Technology.

Arrays of this design have barcodes that begin with 16015354 or 2515354.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9712.


title: Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version)

status: Public on Nov 21 2007

description:
The content on this microarray is derived from the ATH1 v.5 database of The Institute for Genomic Research (TIGR) and from the Arabidopsis MPSS database at the University of Delaware.  Nearly 40,000 features represents 28,500 genes from TIGR and more than 10,000 unannotated transcripts from University of Delaware. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses.

Arrays of this design have barcodes that begin with 16015059 or 2515059.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7299.


title: Agilent-011842 Magnaporthe grisea Oligo Microarray G4137A (Feature Number version)

description:
Replaced by 012756, G4137B.  Magnaporthe griesa 1.0.

Arrays of this design have barcodes that begin with 16011842 or 2511842.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7266.


title: Agilent-021529 Human CGH Whole Genome Microarray 1x1M (G4447A) (Feature Number version)

status: Public on Jun 18 2009

description:
Human CGH Whole Genome Microarray, 1x1M

Arrays of this design have barcodes that begin with 16021529 or 2521529.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL8737


title: Agilent-011839 Arabidopsis 2 Oligo Microarray G4136A (Feature Number version)

description:
Replaced by 013324, G4136B.  The content on this microarray is derived from the ATH1 v. 3 database of The Institute for Genomic Research (TIGR) and represents 21,500 genes. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses.

Arrays of this design have barcodes that begin with 16011839 or 2511839.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7265.


title: Agilent-011447 Yeast Oligo Microarray G4140A (Feature Number version)

description:
Replaced by 013384, G4140B.  This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, response to drug candidates and reproduction.

Arrays of this design have barcodes that begin with 16011447 or 2511447.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7259.


title: Agilent-012750 Human Genome CGH Microarray 44A (Feature number version)

description:
Human Genome CGH Microarray 44A is a high-resolution, high performance 60-mer oligonucleotide-based microarray that contains over 40,000 probes sourced from the NCBI genome (Build 34).  The probes, empirically validated in multiple model systems, span coding and noncoding sequences of the human genome with an average spatial resolution of 35kb.  Coupled with Agilents optimized assay protocols and CGH Analytics software, this microarray enables genome-wide survey and molecular profiling of genomic aberrations (i.e. copy number changes) on a single chip.

Arrays of this design have barcodes that begin with 16012750 or 2512750.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL11069.


title: Agilent-014950 Human Genome CGH Microarray 4x44K (Feature Number version)

status: Public on Dec 31 2007

description:
Transfer of the Human Genome CGH Microarray 44B to the 4x44K format

Arrays of this design have barcodes that begin with 16014950 or 2514950.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL8841.


title: Agilent-013326 Mouse Oligo Microarray (V2) G4121B (Feature Number version)

organism: Mus musculus

description:
Consisting of highly-sensitive 60-mer oligonucleotide probes that target human genes present in Incyte LifeSeq Foundation partial sequence database, the Agilent Human 1B Oligo Microarray Kit queries more rare human transcripts where full-length information is not available. The microarray is fully annotated to allow customers to access public or Incyte LifeSeq databases for additional bioinformatics data about the genes.

Arrays of this design have barcodes that begin with 16013326 or 2513326.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7291.


title: Agilent-013282 Human Genome CGH Microarray 44B (Feature number version)

description:
Human Genome CGH Microarray 44B, high-resolution, high performance 60-mer oligonucleotide, allowing genome-wide survey and molecular profiling of DNA copy number changes on a single chip.  It provides comprehensive genome-wide coverage with emphasis on the most commonly studied genomic regions and cancer-related genes.  It consists of ~43,000 60-mer oligonucleotide probes, empirically validated in multiple model systems, spanning coding and noncoding sequences with average spatial resolution of 35kb.  It replaces 44A (G4410A), includes all biological probes from 44A, mapped to the latest NCBI build, 35), plus an additional ~ 2,500 probes to expand coverage in the human genome.  Agilent has taken extra measures to design the microarray that truly represents the coverage and performance needed for this application.  Agilent has developed and optimized assay protocols that enable researchers to use nanogram levels of total genomic DNA without genome complexity reduction.

Arrays of this design have barcodes that begin with 16013282 or 2513282.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL11068.


title: Agilent-014823 Human Whole Genome ChIP-on-Chip Set 244K - 6 of 25 (Feature Number version)

status: Public on Nov 12 2009

description:
Human Whole Genome ChIP-on-Chip Set 244K, 6 of 25

Arrays of this design have barcodes that begin with 16014823 or 2514823.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9643.


title: Agilent-014695 Mouse Genome CGH Microarray 244A (G4415A) (Feature Number version)

status: Public on Aug 15 2006

description:
This microarray is Agilent’s premium product for mouse DNA copy-number profiling. Over 235,000 60-mer oligonucleotide probes, specifically optimized for copy-number measurement, span coding and non-coding genomic sequences with median spacing of 6.2 kb and 15.2 kb respectively. This microarray is designed for use with Agilent’s optimized assay protocols, enabling researchers to use nanogram levels of total genomic DNA without complexity reduction.

Arrays of this design have barcodes that begin with 16014695 or 2514695.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL15076 (Probe Name version)


title: Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version)

status: Public on Jun 15 2008

organism: Oryza sativa

description: *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL8852.


title: Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K G2519F (Feature Number version)

status: Public on Mar 07 2008

description:
Design ID: 015064

Agilent has developed a genome-wide zebrafish microarray to enable scientists to study gene expression profiling at the global level and enhance our understanding of zebrafish biology and gene functions related to mammalian models.

Arrays of this design have barcodes that begin with 16015064 or 2515064.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7302.


title: Agilent-014820 Human Whole Genome ChIP-on-Chip Set 244K - 3 of 25 (Feature Number version)

description:
Human Whole Genome ChIP-on-Chip Set 244K, 3 of 25

Arrays of this design have barcodes that begin with 16014820 or 2514820.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL9640.