title: UIUC Cattle 7,872-element cDNA - condensed version

status: Public on Jan 06 2013

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Bos taurus

description: The 7,872 cDNAs used in this microarray were obtained from normalized and subtracted cattle placenta and spleen cDNA libraries (see Band et al., 2002 Anim. Biotechnol. 13:163-172; Everts et al., 2005 Vet. Immunol. Immunopathol. 105:235-245). Positive controls include beta actin (ACTB), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and hypoxanthine phosphoribosyltransferase (HPRT). Exogenous spiking controls are the soybean genes chlorophyll ab binding protein (CAB), Rubisco small chain 1 (RBS1), and major latex protein (MSG). Negative controls are Cot1 DNA, genomic DNA, spotting buffer, poly-A, and water. All PCR products were printed in duplicate on the array.  This is an alternative version of GPL2108.  Keywords: cDNA, cow, bovine, microarray

manufacturer: W.M. Keck Center, University of Illinois Urbana-Champaign

manufacture_protocol: cDNAs were printed in 3xSSC/1.5M betaine on amino-silane coated slides.


title: Illumina Genome Analyzer IIx (Brassica juncea)

status: Public on Jan 02 2013

last: GEO

country: USA

organism: Brassica juncea

technology: high-throughput sequencing

distribution: virtual


title: AB 5500 Genetic Analyzer (Homo sapiens)

status: Public on Jan 28 2013

organism: Homo sapiens


title: LC Sciences Papio hamadryas miRNA array [UT_D110128]

status: Public on Jan 04 2013

city: Houston

first: Christoph

last: Eicken

state: TX

address: 2575 W. Bellfort

institute: LC Sciences, LLC

organism: Papio hamadryas

technology: in situ oligonucleotide

description: Custom miRNA microarray targeting the mature miRNAs of Papio hamadryas

distribution: commercial

manufacture_protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.


title: Illumina HiSeq 2000 (Brassica carinata)

organism: Brassica carinata


title: Stanford Human 44K Exonic Evidence Based Oligonucleotide (HEEBO) Arrays (HOAE)

status: Public on Jan 03 2013

city: Rio de Janeiro

first: Anna Beatriz

middle: Robottom

last: Ferreira

state: Rio de Janeiro

address: Rua Adolfo Lutz 55 apt 201

country: Brazil

institute: Fundação Oswaldo Cruz

technology: spotted oligonucleotide

distribution: custom-commercial

manufacturer: The Stanford Functional Genomics Facility (SFGF)

manufacture_protocol: see manufacturer's website


title: NanoString nCounter Gene Expression

status: Public on Jan 01 2013

city: Boston

first: Matija

last: Snuderl

state: MA

address: 55 Fruit St.

department: Pathology

institute: MAssachusetts General Hospital

technology: other

description: Custom codeset and quantitative mRNA detection


title: Affymetrix Wye3aHamster array

city: Dublin

first: Padraig

last: Doolan

address: Glasnevin

country: Ireland

institute: Dublin City University

organism: Cricetulus griseus

manufacture_protocol: see manufacturer's web site


title: Campylobacter jejuni subsp. jejuni NCTC 11168  15K Microarrays

city: Seoul

first: Sunyoung

last: Hwang

address: 599 Gwanak-ro

department: Department of Food and Animal Biotechnology

country: South Korea

institute: Seoul National University

organism: Campylobacter jejuni

manufacture_protocol: refer to MYcroarray , MI. USA.


title: NimbleGen-091125 Bacteroides fragilis 638R Custom 385K Expression Array

city: Greenville

first: Charles

middle: Jeffrey

last: Smith

state: NC

address: 600 Moye Blvd.

department: Microbiology & Immunology

institute: East Carolina University

organism: Bacteroides fragilis 638R

description:
091125_Bfra_CJS_exp Custom expression order for Bacteroides fragilis (FQ_312004).
Each probe will be replicated 8 times on the chip. Probes are randomly distributed over the surface of the array.
Picked 11 probes per gene for all 4341 cds regions (12 SEQ_IDs were duplicates).  8 replicates on final array

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer technology per manufacturer website .


title: EX-V10-human-November 2007-adjusted

city: Brno

first: Marek

last: Mraz

address: Cernopolni 9

department: Dept. Hematology and Oncology

country: Czech Republic

institute: University Hospital Brno

description:
miChip: an array-based method for microRNA expression profiling using locked nucleic acid capture probes.
Castoldi M, Schmidt S, Benes V, Hentze MW, Muckenthaler MU.
Nat Protoc. 2008;3(2):321-9.
PMID: 18274534 [PubMed - indexed for MEDLINE]

distribution: non-commercial

first: Dasa

last: Dolezalova


title: NimbleGen Citrus sinensis custom array [090831_FAPESP_Citrus_sinensis_expr]

status: Public on Dec 16 2012

city: Cordeirópolis

first: Valéria

last: Mafra

state: São Paulo

address: Rod. Anhanguera

institute: Centro de Citricultura Sylvio Moreira

organism: Citrus sinensis

description:
NimbleGen design ID 10554, for OID24250 for Citrus sinensis, based on 31,535 sequences plus probes for six additional citrus sequences. Array density of 385K, probes with 60mer.  3 probes per target, 4 copies on array.  The design includes random GC and other control probes.
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.

manufacture_protocol: High-density D array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: NimbleGen Mouse DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [100718_MM9_CpG_Refseq_Prom_MeDIP]

city: Madison

first: Inc

last: Nimblegen Systems

state: WI

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

organism: Mus musculus

description:
Format: 3x720K
Source: UCSC
Build: MM9
Transcripts: 22,881
Promoters: 20,404 (Calculated based on transcription start sites. Any transcription start sites on the same strand closer than 500bp are assumed to be transcribed from the one promoter. For a complete list of transcripts whose promoters are covered on each array, please contact Roche NimbleGen technical support)
Number of CpG Islands: 15,980


title: CSL Onc flower cDNA array

city: Taipei

first: Choun Sea

last: Lin

address: 128 Academia Road, Section 2

department: Agriculture Biotechnology Research Center

country: Taiwan

institute: Academia Sinica

organism: Oncidium hybrid cultivar

technology: spotted DNA/cDNA

manufacturer: Insititute of Plant and Microbial Biology DNA microarray core laboratory, Taiwan

manufacture_protocol: The cDNA microarrays were printed on GAPS2-coated glass slides with use of the OmniGrid 100 microarrayer.


title: Agilent Custom Apis mellifera aCGH, 2X400 designed by Genotypic Technology Private Limited

status: Public on Dec 15 2012

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Apis mellifera

first: Mugasimangalam

middle: C

last: Raja

first: Kumar

middle: M

last: Ajaya


title: University of Arizona Oligonucleotide Microarray Facility Operon-Qiagen Arabidopsis Genome AROS 3.0

city: Tucson

first: David

middle: M.

last: Rhoads

state: Arizona

address: 1140 East S. Campus Dr.

department: Plant Sciences

institute: University of Arizona

organism: Arabidopsis thaliana

manufacturer: David Galbraith laboratory, University of Arizona

manufacture_protocol: Oligonucleotides used were from the Operon-Qiagen Arabidopsis Genome Array Ready Oligo Set (AROS) version 3.0, which represents >26,000 loci (Qiagen, Valencia, CA, USA).


title: Human WG-6 v2.0 BeadChip (gene version)

status: Public on Dec 01 2012

city: Chapel Hill

first: Dallas

middle: Ross

last: Donohoe

address: 120 Mason Farm Rd.

department: Genetics

institute: University of North Carolina at Chapel Hill

technology: oligonucleotide beads


title: Agilent-033769 Homo sapiens 244K GBM 04_2011

city: Tampere

first: Matti

last: Annala

address: Korkeakoulunkatu 1

country: Finland

institute: Tampere University of Technology

description:
Arrays of this design have barcodes that begin with 16033769 or 2533769.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: CIT-CGH Homo sapiens BAC

city: Paris

first: Nabila

last: Elarouci

address: 14 rue Corvisart

department: Recherche

country: France

institute: Ligue Nationale contre le Cancer

manufacture_protocol:
This platform represents combined features from the following three array versions with varying numbers of BAC clones:
CIT-CGH Homo sapiens 4.7K V6
CIT-CGH Homo sapiens 5.2K V6Plus
CIT-CGH Homo sapiens 5.9K V7
The IntegraChipTM microarray was designed by the CIT-CGH consortium (Olivier Delattre Laboratory, Curie Institute, Paris; Charles Theillet Laboratory, CRLC Val d'Aurelle, Montpellier; Stanislas du Manoir Laboratory, IGBMC, Strasbourg) and the company IntegraGenTM (http://www.integragen.com).
Bacterial artificial chromosome (BAC) clones were chosen to obtain a systematic coverage of the genome, and detailed coverage of regions containing genes previously implicated in carcinogenesis. The median gap between two successive clones is 600 kb. Four replicate spots were deposited on the slides. For each sample, 500-600 ng of sonicated DNA was labelled by Random-Priming (Bioprime Labelling kit, Invitrogen, Carlsberg, CA, USA) according to the suppliers\x{2019} instructions, but for 18h. For tumour DNA, final concentrations of nucleotides were 0.02 mM of dCTP-Cy5 (Amersham Biosciences), 0.1 mM of dATP, dGTP, dTTP and 0.025 mM dCTP. For control DNA, 0.04 dCTP-Cy3 (Amersham Biosciences), 0.2 mM of dATP, dGTP, dTTP and 0.05 mM dCTP. Labelled DNAs were purified using MicroSpin-G50 columns (Amersham Biosciences). COT Human DNA (70 \x{03bc}g, Roche Diagnostics) and Salmon Testes DNA (30 \x{03bc}g, Sigma Chemical Co.) were added to the mixed tumour and reference DNAs. They were subsequently concentrated using a microcon YM-30 (Millipore) and resuspended to obtain 200 \x{03bc}l of hybridization solution (final concentration: 50% formamide, 0.8 x SCC, 10% W/V dextran sulfate, 2% SDS, pH=7). Finally, the probes were pre-annealed for 3 hours at 37°C. Every step was carried out in the HS 4800 hybridization station (Tecan). Slide pre-treatment included rinsing with 2 x SSC, 0.1% SDS at 30 °C for 30s, 2 x SSC at 30 °C for 30s and drying. After probe injection, hybridization was performed for 68h at 37°C under low agitation. Four post-hybridization washes were carried out: 50% formamide, 2 x SSC, 0.1% SDS at 45 °C for 37 s, 4 times; 2 x SSC, 0.1% SDS at 45 °C for 37 sec, 4 times; 4 x SSC, 0.1 Tween 20 at 45 °C for 37 sec, 4 times; slides were finally nitrogen dried and scanned using a ScanArray 4000 (Packard Bioscience). Images were quantified using UCSF Spot 2.1cc (Jain et al., 2002).


title: UQ_PGEL_Pineapple_10K_v1.0

status: Public on Nov 30 2012

city: Brisbane

first: Jonni

last: Koia

address: Mansfield Place

department: School of Agriculture and Food Sciences

country: Australia

institute: University of Queensland

organism: Ananas comosus

manufacturer: ARC Special Research Centre for Functional and Applied Genomics Microarray Facility

manufacture_protocol:
Element type - cDNA double stranded
Element generation protocol - PCR using 5’ amino modified primers
Production protocol - contact pin (Telechem)
Pin configuration - 16 (4x4)
Surface - glass
Surface name - Corning UltraGAPS
Attachment protocol - Covalent (UV Crosslink 250mJ)


title: Illumina Genome Analyzer II (Magnaporthe oryzae)

last: GEO

organism: Pyricularia oryzae


title: 35K Human Genome Array v4.0.3

status: Public on Nov 03 2012

city: Beijing

first: Lin

last: Cong

address: 5 Nanmencang, Dongcheng District

country: China

institute: General Hospital of Beijing Military Command

manufacture_protocol: as described in CapitalBio Corporation Manual


title: [skychip1d520579] Affymetrix Human AMLprofiler Array

city: Rotterdam

first: Martin

middle: van

last: Vliet

address: Lichtenauerlaan 40

department: Bioinformatics

country: Netherlands

institute: SkylineDx

description: It is an RNA chip, however, we employ the SNP algorithm DM from the Affymetrix Power tools.


title: Stanford_Mouse_MEEBO

status: Public on Nov 20 2012

city: Stanford

first: Tim

last: Stearns

state: CA

address: Lorry Lokey Chem/Bio, 337 Campus Drive

department: Biology

institute: Stanford University

first: Ramona

middle: A

last: Hoh

manufacture_protocol:
The Mouse Exonic Evidence Based Oligonucleotide (MEEBO) array was developed by a group of researchers from Stanford and UCSF with collaborators from Rockefeller, Basel, and the Stowers Institute.

The oligonucleotide set consists of 38,784 70mer probes that were designed using a transcriptome-based annotation of exonic structure for genomic loci.

The oligonucleotide sequences and the feature set is included in the platform data table below.

The MEEBO array contains a collection of oligo probes, largely resultant from constitutively and alternatively spliced exons.

Reference: Verdugo RA, Medrano JF. Comparison of gene coverage of mouse oligonucleotide microarray platforms. BMC Genomics 2006 Mar 21;7:58. PMID: 16551360


title: Illumina HiSeq 2000 (Homo sapiens; Mus musculus)

status: Public on Jan 16 2013

organism:
Homo sapiens
Mus musculus


title: FHCRC Human Prostate PEDB cDNA Array v11

status: Public on Dec 31 2012

city: Seattle

first: Ilsa

last: Coleman

state: WA

address: 1100 Fairview Ave N, E2-112

department: Human Biology

institute: Fred Hutchinson Cancer Center

manufacture_protocol: DNA spotted onto polylysine-coated glass microscope slides


title: Agilent-scanner-UNC-custom-8X60K-Barcode39494

status: Public on Nov 22 2012

first: Albert

last: Baldwin

address: 450 West Drive

department: LCCC

institute: UNC-Chapel Hill

manufacture_protocol: Agilent printing protocol


title: MoEx-1_0-st Mus musculus ENSE version 14

status: Public on Nov 02 2012

city: Stockholm

last: Enge

address: CCK, Z4

department: Dep of Oncology-Pathology

country: Sweden

institute: Karolinska Institute

manufacture_protocol: On-chip photolithography


title: Illumina HumanRef-8 v3.0 expression beadchip (Search Key version)

status: Public on Oct 27 2012

city: Buffalo

first: ROOPA

last: THAPAR

state: NY

address: 700 Ellicott Street

department: Structural Biology

institute: Hauptman Woodward Medical Research Institute

description:
The HumanRef-8 v3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22).

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data.  These should be submitted as part of a GEOarchive.  Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html

manufacture_protocol: See manufacturer's website.


title: Agilent-024824 Bombyx mori custom array

city: Kanazawa

first: Takumi

last: Nishiuchi

address: 13-1 Takaramachi

country: Japan

institute: Kanazawa University

organism: Bombyx mori

description:
Arrays of this design have barcodes that begin with 16024824 or 2524824.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Agilent-024824 Unigene
custom made (8x16k) Oligo Microarray (Agilent Technologies, Inc.).


title: Infinium HumanOmniExpressExome BeadChip

status: Public on Nov 28 2012

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: See manufacturer's website


title: Agilent-024772 Human custom chromosome X 63K (elena)

status: Public on Oct 01 2012

city: Florence

first: Chiara

last: Chianese

address: viale Pieraccini. 6

country: Italy

institute: Univerity of Florence

description:
custom elena
Arrays of this design have barcodes that begin with 16024772 or 2524772.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent Mouse 44K custom high-definition whole-genome oligo array

status: Public on Oct 05 2012

city: Antwerp

first: Leela Rani

last: Avula

state: Antwerp

address: Groenenborgerlaan 171

department: Dept of Veterinary Sciences

country: Belgium

institute: University of Antwerp

description: To design the custom arrays (design ID 021695, G2514F), about 26 custom probes (which were not priorly included in the Agilent catalogue No. 014868) were added to the Agilent catalogue No. 014868 and printed on 4 x 44K slide format. The 26 custom probes can be identified by the abbreviation CUST in the ID_REF in the matrix table. This custom microarray 4X44K platform represented almost all known genes in the mouse genome and their resulting transcripts in over 41000 60-mer oligonucleotide probe features.

first: Leela

middle: R

first: Dries

last: Knapen

first: Roeland

last: Buckinx

first: Lucia

last: Vergauwen

first: Luc

last: Van Nassauw

first: Jean-Pierre

last: Timmermans

manufacture_protocol: 60-mer oligonucleotides printed by Agilent


title: Agendia_DiscoverPrint_HN

status: Public on Oct 10 2012

city: Amsterdam

first: Paul

last: Roepman

address: Science Park 406

institute: Agendia

manufacture_protocol: Microarrays were prepared by Agilent technologies using their Agilent SurePrint Technology. Breifly, 60-mer oligonucleotides are synthesized base-by-base in repetitive print layers on a solid glass substrate, using standard phosphoramidite chemistry.


title: Agilent-031057 Yeast_SPO_10.03 016322 [Probe Name version]

status: Public on Oct 22 2012

city: Montpellier

first: Carole

last: Camarasa

address: 2, place Pierre Viala

institute: INRA

organism: Saccharomyces cerevisiae

description:
Yeast ORF + regions A, B and C

Arrays of this design have barcodes that begin with 16031057 or 2531057.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

This Platform record is based on the Probe Name.  For the full layout, please refer to the supplementary file attached below.

Agilent gene expression microarrays 8x15k, array design is based on ID 016322 completed with the 39 genes from the new region of EC1118 (Agilent Technologies, Santa Clara, CA, USA).


title: Derived from GPL3895 10/05/10 - CCDTM Hs_CCDTM17.5k

city: Doha

first: Francesco

middle: Maria

last: Marincola

address: Al Nasr Tower, AL Corniche Street, PO Box 26999

country: Qatar

institute: Sidra Medical and Research Center

manufacturer: NIH Clinical Center, Dept. of Transfusion Medicine, Immunogenetics Section (NIH/CC/DTM)

manufacture_protocol: Microarrays are printed with GeneMachines robotic arrayer from Genomic Solutions (http://www.genomicsolutions.com) that is fitted with a printhead containing 32 SMP2.5 printing pins from Telechem International (http://www.arrayit.com). The human cDNA probe set is based on RG_HsKG_031901 8k clone set and 9k clones from the RG_Hs_seq_ver_070700 40k clone set from Research Genetics (http://clones.invitrogen.com). The set includes 12,072 uniquely named genes, 875 duplicates of named genes and all remainder consisted of expression sequence tags (about 4053 EST). The cDNA probes were amplified by PCR and distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in 3XSSC print buffer at a concentration of 50-100 ug/ml. The microarray spot densities are 280 microns (center-to-center), and one spot is printed per probe per slide. The microarrays are printed on Fisher Premium microscope slides (cat# 12-544-1) coated with poly-L-lysine and post-processed according to the procedures on the NCI website http://madb.nci.nih.gov/.


title: Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version)

status: Public on Jan 30 2013

city: Palo Alto

last: Agilent Technologies

country: USA

institute: Agilent Technologies

organism: Sus scrofa

description:
Sus scrofa (Pig) Oligo Microarray v2

Arrays of this design have barcodes that begin with 16026440 or 2526440.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina Genome Analyzer IIx (Candida parapsilosis)

status: Public on Sep 21 2012

last: GEO

organism: Candida parapsilosis


title: Illumina MouseWG-6 v2.0 expression beadchip (gene level)

status: Public on Sep 01 2012

city: Saint-Hyacinthe

first: Derek

last: Boerboom

address: 3200 rue Sicotte

country: Canada

institute: Centre de recherche en reproduction animale

manufacture_protocol: see manufacturer's website


title: Ag-VIBxp1122v2-4X44

status: Public on Sep 02 2012

city: Leuven

first: Rekin's

last: Janky

address: Herestraat 49 Box 816

department: Nucleomics Core

institute: VIB

organism: Homo sapiens

first: Guy

last: Froyen


title: Pancchip 6.1 arrays v3

city: San Francisco

first: Feroz

last: Papa

address: 1700 4th Street

department: Medicine

institute: University of California, San Francisco

manufacturer: University of Pennsylvania School of Medicine Functional Genomics Core

manufacture_protocol: 1.Oligos are arrayed in 96-well flat-bottom plates.  2. Resuspend oligos in 50μL water, diluted with equal volume of DMSO  Printed on poly-l-lysine–coated slides with an Affymetrix 417 arrayer.


title: Agilent-027730 Human 180K_UMCG_V2 023363 (Probe name version)

city: Groningen

first: Klaas

last: Kok

institute: UMCG

description:
180K without tier3 probes

Arrays of this design have barcodes that begin with 16027730 or 2527730.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [GeneSpring.GeneLevel]

status: Public on Aug 30 2012

city: Washington

first: Timothy

last: McCaffrey

state: DC

address: 2300 I Street NW

department: Department of Biochemisty & Molecular Biology

institute: The George Washington University

description: GeneSpring.GeneLevel.Affymetrix_GeneChip_HG-U133_Plus_2_740805741

manufacture_protocol: see manufacturer's web site


title: [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [GENCODE v10]

status: Public on Aug 29 2012

city: Rensselaer

first: Sridar

middle: V

last: Chittur

address: One Discovery Drive, CRC 342G

department: Center for Functional Genomics

institute: SUNY-University at Albany

description: Custom metaprobest definition based on the GENCODE v10 annotation (July 2011).

manufacture_protocol: See manufacturer's web site


title: Illumina HiSeq 2000 (Solanum tuberosum)

status: Public on Jan 02 2013

organism: Solanum tuberosum


title: Illumina mouse-6 v1.1 expression beadchip [TargetID centered version]

status: Public on Aug 17 2012

first: Mingfang

last: Lu

department: LCID

institute: NIH/NIAID

description:
Identical to GPL6105, except centered to the TargetID.
The MouseWG-6 v1.1 Expression BeadChip contains six wholegenome gene expression arrays allowing six samples to be hybridized to a single chip.  BeadChip content was created by combining proven sources, including the Mouse Exonic Evidence Based Oligonucleotide (MEEBO) set, the RIKEN FANTOM 22-5 database, and the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database.

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data.  These should be submitted as part of a GEOarchive.  Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html


title: UPenn Mouse PancChip 6.1

status: Public on Aug 16 2012

city: Columbus

first: Peter

last: White

state: OH

address: 700 Children's Drive

department: Microbial Pathogenesis

institute: Nationwide Children's Hospital

first: Klaus

last: Kaestner

manufacture_protocol: Bacterial clones were grown overnight in LB-AMP cultures.  Plasmid DNA was prepared for each clone using a Qiagen 3000 robot, and the purified DNA was used as a template to amplify the inserts with PCR. The clones were assigned a PCR score of 0 indicating a single band, 1 if there were no bands present, or 2 if there were multiple bands. The PCR products were purified, eluted with deioinzed sterile water, diluted with an equal volume of DMSO (Sigma) and printed on Corning ULTRA Gaps slides with a NanoPrint Microarrayer.   PancChip 6.1 contains 13,059 clones, many of which were previously included on the PancChip 5.0, and various control spots.


title: Genomic Tree-Yonsei Cancer Center Human 23K Array

status: Public on Jul 31 2012

city: Seoul

first: Han Sang

last: Kim

address: Shin chon dong

department: Internal medicine

institute: Yonsei Cancer Center


title: Karmanos Cancer Institute Prostate Cancer Panel

status: Public on Dec 31 2012

city: Detroit

first: Aliccia

middle: B

last: Bollig-Fischer

state: MI

address: 4100 John R, HWCRC rm 815

institute: Karmanos Cancer Inst., Wayne State University


title: A-UMCU-CE44K-2.0

status: Public on Jul 12 2012

city: Utrecht

first: Sander

last: van Hooff

state: Utrecht

address: Universiteitsweg 100

department: Department of Molecular Cancer Research

institute: UMC Utrecht

organism: Caenorhabditis elegans

manufacturer: Holstege Lab, UMC Utrecht, The Netherlands

first: Dik

last: van Leenen

first: Marian

last: Groot Koerkamp

first: Philip

last: Lijnzaad

first: Linda

last: Bakker

first: Erik

last: Sluiters

first: Patrick

last: Kemmeren

first: Frank

last: Holstege

manufacture_protocol: 1. Slides are obtained from a commercial provider (Agilent) and reannotated using blat to obtain the latest gene annotations from ensembl.


title: Agilent-026806 M. mulatta (Rhesus) Oligo Microarray v2 (Probe Name Version)

status: Public on Sep 07 2012

last: Agilent Technologies

organism: Macaca mulatta

description:
M. mulatta (Rhesus) Oligo Microarray v2

Arrays of this design have barcodes that begin with 16026806 or 2526806.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-026806 M. mulatta (Rhesus) Oligo Microarray v2 (Feature Number version)


title: ABI Human Genome Survey Microarray v2.0

status: Public on Jun 28 2012

city: Taichung

first: YAWEN

last: CHENG

address: No. 110, Sec. 1, Jianguo N. Rd.

institute: Chung Shan Medical University


title: Drosophila 2 x 15K Genome Array

status: Public on Jul 01 2012

city: Wuhan

first: Jialin

last: Wang

address: no.152 Luoyu Road

institute: Central China Normal University

organism: Drosophila melanogaster

manufacture_protocol: Unmodified DNA oligonucleotides are synthesised in our high throughput production facility, using highly automated synthesiser technologies in combination with a sophisticated, completely barcode driven LIMS.Unmodified DNA oligos are available either as Salt Free oligos or as purified oligos. Purifications can be performed either by our proprietary HPSF purification method, by HPLC or by HYPUR gel purification.


title: Agilent-023711 G_aculeatus_Bell_Array1

status: Public on Oct 01 2012

city: Urbana

first: Yibayiri

middle: Osee

last: Sanogo

state: IL

address: 505 S. Goodwin

department: Integrative Biology

institute: University of Illinois at Urbana-Champaign

organism: Gasterosteus aculeatus

manufacture_protocol: see manufacturer's web site at http://www.agilent.


title: Derived from GPL3895 02/07/11- CCDTM Hs_CCDTM17.5k

status: Public on Jun 25 2012

first: Francesco

last: Marincola


title: UCSF/HAQQLAB_Human_40986_ISPY

status: Public on Aug 01 2012

first: Mark

last: Magbanua

address: 1450 3rd Street, PO Box 589001

department: HemOnc

institute: UCSF/Helen Diller Familiy Comprehensive Cancer Center

manufacture_protocol: See the following reference for details: Fox, M.S., Ares, V.X., Turek, P.J., Haqq, C. and Pera, R.A.R. (2003) Feasibility of global gene expression analysis in testicular biopsies from infertile men. Mol. Reprod. Dev., 66, 403 – 421.


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: GATExplorer_Ensembl v57]

status: Public on Sep 25 2012

city: Salamanca

first: Javier

last: De Las Rivas

address: Campus Miguel de Unamuno

department: CSIC and University of Salamanca

country: Spain

institute: Cancer Research Center (CiC-IBMCC)

description:
The probes were mapped to GENE LOCi by the CDF built by GATExplorer
http://bioinfow.dep.usal.es/xgate/principal.php
http://bioinfow.dep.usal.es/xgate/mapping/mapping.php

The CDF file is designed to install as 'R' package; 'genemapperhgu133plus2cdf_3.0.tar.gz' available at:
http://bioinfow.dep.usal.es/xgate/mapping/mapping.php?content=rprogram

relation: Alternative to: GPL570 (Alternative CDF [official])

manufacture_protocol: see manufacturer's protocol


title: Arabidopsis thaliana Whole Genome 8x60k designed by Genotypic Technology Pvt. Ltd. (AMADID:037661 )

city: Bangalore

first: Genotypic

last: technology

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

first: Mugasimangalam

last: Raja


title: LaRiM Operon Human V3.0 printed oligonucleotide 36K array

status: Public on Jun 22 2012

city: Rome

first: Lucia

last: Gabriele

address: Viale Regina Elena, 299

institute: Istituto Superiore di Sanità

manufacturer: LaRiM_Microarray facility_ Istituto Superiore di Sanità

first: Irene

last: Canini

first: Stefania

last: Parlato

first: Debora

last: Salerno

first: Eleonora

last: Aricò

first: Luciano

last: Castiello

first: Filippo

last: Belardelli

manufacture_protocol:
This array consists of 34,580 70mer oligonucleotide representing 24,650 genes and 37,123 gene transcripts (Operon Version 3.0 of the Human Genome Oligo Set). Oligonucleotides are consolidated into 384-well plates, lyophilized by speed-Vac, and resuspended in 3x SSC to a printing concentration of 30uM. Each oligonucleotide is spotted onto aminosilane glass slide SuperChip I (Cat No MPS696) provided by PerkinElmer Life Sciences Inc. using our robotic station GeneMachines OmniGrid 100 microarray printer (Genomic Solutions, Ann Arbor, Mich.) and Stealth Microspotting pins SMP3 (Telechem International, Sunnyvale, CA). The slides were:
1. crosslinked in a UV Stratalinker 1800 (Stratagene) at 600mJ;
2. washed in 1% SDS and 3X SSC on shaker for 1 min;
3. washed in distilled water on shaker for 5 min (for two times);
4. washed in distilled water to 100℃ for 20 sec;
5. stored, ready to use,  in the dark under deep vacuum.


title: Mouse MEEBO 35K array

status: Public on May 18 2012

first: Laurie

last: Littlepage

address: 513 Parnassus Avenue, Box 0452

department: Anatomy

organism: Mus musculus

manufacture_protocol: The Mouse Exonic Evidence Based Oligonucleotide (MEEBO) array was developed by a group of researchers from Stanford and UCSF with collaborators from Rockefeller, Basel, and the Stowers Institute. The oligonucleotide set consists of 38,784 70mer probes that were designed using a transcriptome-based annotation of exonic structure for genomic loci. See http://www.microarray.org/sfgf/meebo.do for more information.


title: [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array (custom hg19 gene definition)

city: Essen

first: Stefan

last: Heinrichs

address: Virchowstr. 179

department: Institute of Transfusion Medicine

country: Germany

institute: University Hospital Essen


title: CapitalBio Human oligo chip 35k array V2.0

status: Public on Jun 10 2012

city: Beijing

first: cheng

last: long

address: 27 Tai-Ping Lu Rd

institute: Beijing Institute of Biotechnology

description: CapitalBio Human oligo chip 35k V2.0 containing 35,000 human gene elements

manufacture_protocol:
1.The oligo library (Operon Human Genome Oligo Set Version 4.0 library) and additional internal and external controls are spotted on a 75×25 mm chemically modified slide using a SmartArrayer™ microarray spotter (CapitalBio Corp.)
2.Hydrate the slide over a 60℃ water bath for 10 seconds by holding the microarray slide label-side down about 2-3 cm above the water vapor. Then allow the microarray to dry at room temperature for 10 min and then hydrate again for another 10 seconds. Watch spots carefully to avoid over-hydration (where the spots begin to merge together).
3.Cross-link the slide by exposing the slides label-side up to 250 mJ/cm2 UV light in a commercial UV cross-linker.
4. Wash in 0.5% SDS preheated to 42℃ on a horizontal shaker (80 rpm) for 10 min.
5. Wash in distilled water preheated to 42℃ on a horizontal shaker (80 rpm) for 4-5 min.
6. Wash in ethanol on a horizontal shaker (80 rpm) for 2-3 min.
7.Transfer the slide to a conical 50 ml centrifuge tube and centrifuge for 1 min at 2,000 rpm to remove the surface liquid. Then the microarray is ready for hybridization.


title: A-UMCU-M44K-2.0

first: Sander

last: van Hooff

first: Dik

last: van Leenen

first: Marian

last: Groot Koerkamp

first: Philip

last: Lijnzaad

first: Linda

last: Bakker

first: Erik

last: Sluiters

first: Patrick

last: Kemmeren

first: Frank

last: Holstege


title: NimbleGen_Sus scrofa_135K array

status: Public on Jun 18 2012

city: Nanjing

first: Runsheng

last: Li

state: Jiangsu

department: Nanjing Agricultural University

institute: Nanjing Agricultural University

description: Each probe is replicated 3 times. The design includes random GC and other control probes.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Agilent-024736 hCh5-timing 024719

status: Public on May 15 2012

city: Setagaya-ku

first: Satoshi

last: Yamazaki

state: Tokyo

address: 2-1-6 Kamikitazawa

department: Genome Dynamics Project

institute: Tokyo Metropolitan Institute of Medical Science

description:
Build:hg18, NCBI 36
ch5 110-150M
Arrays of this design have barcodes that begin with 16024736 or 2524736.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Swine Protein-Annotated Oligonucleotide Microarray [oligo_ID version]

city: Edmonton

first: James

middle: Michael

last: Wilkinson

state: Alberta

address: Ag/For Building

department: Agriculture, Food, and Nutritional Science

institute: University of Alberta

manufacturer: Illumina (Oligo synthesis); University of Arizona (Array printing)

manufacture_protocol:
Printing protocols available at:
http://ag.arizona.edu/microarray/protocol1A.doc
Information on oligonucleotide design available at:
http://www.pigoligoarray.org/


title: A-UMCU-HS44K-2.0


title: [mjay_r2] Custom Affymetrix Mouse Exon Junction Array

status: Public on May 08 2012

city: Coralville

first: Botond

last: Banfi

state: Iowa

address: 2501 Crosspark Road

department: Anatomy and Cell Biology

institute: University of Iowa

description:
The MJAY_r2 platform contains the same probesets in the GPL13185 platform, yet the IDs (provided by Affymetrix in the library files) are not identical to those in GPL13185.

The 'alternative/constitutive' information is provided for every exon/probeset which is important for the analysis of the microarray data associated with this platform.

MJAY_r2.pgf : Probe Group File
MJAY_r2.full.mps.txt : Meta Probeset File that Enables transcript level analysis
mjay.r2.annotation_map.txt : contains information that links each probeset and transcript level identifiers to specific annotation information

relation: Alternative to: GPL13185 (Alternative PGF [official])

manufacture_protocol: see website


title: Agilent-015347 Regeneron-Custom-Agilent-44k

status: Public on Apr 29 2012

city: Tarrytown

first: Wen

last: Zhang

address: 777 Old Saw Mill River Road

institute: Regeneron Pharma.


title: Agilent-015064 D. rerio (Zebrafish) Oligo Microarray 4x44K (V3)

status: Public on Apr 26 2012

city: Shanghai

first: Haifang

last: Wang

address: 320 yueyang road

department: CAS-MPG Partner institute for Computational Biology

institute: Shanghai institute for biology science

organism: Danio rerio

description: Agilent D. rerio (Zebrafish) Oligo Microarray V3, 4*44K. The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL14664.


title: Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881

status: Public on Mar 08 2012

city: College Station

first: Ryan

last: Doan

state: Texas

address: 4467 TAMU

institute: Texas A&M University

organism: Canis lupus familiaris

description:
CanFam2.0

Arrays of this design have barcodes that begin with 16027178 or 2527178.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NimbleGen Human CGH 3x720K Whole-Genome Tiling v3.0 Array [090527_HG18_WG_CGH_v3.1_HX3]

status: Public on Apr 12 2012

city: Madison

first: Inc

last: Nimblegen Systems

state: WI

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

description:
Build: Hg18, NCBI 36
Design name : 090527_HG18_WG_CGH_v3.1_HX3
Design ID: 10033

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Agilent-035654 Canine_murine miRNAv17

status: Public on Apr 03 2012

city: Munich

first: Karin

last: Weber

address: Veterinärstr. 13

department: Medizinische Kleintierklinik

institute: Zentrum für klinische Tiermedizin

description:
Canine and murine miRNAs Agilent miRBase v17

Arrays of this design have barcodes that begin with 16035654 or 2535654.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [CDF: MoGene10stv1_Mm_ENTREZG_12.1.0]

status: Public on Jun 23 2012

city: Bar Harbor

first: Timothy

last: Stearns

state: ME

address: 600 Main Street

department: Computational Sciences

institute: The Jackson Laboratory

description: This Platform is identical to GPL6246, but a custom CDF environment was used to extract data. The CDF and other chip library files are linked below as supplementary files.

manufacture_protocol: See manufacturer's web site (www.affymetrix.com),


title: Rosetta/Merck Rat 4.0 A1 microarray

city: Seattle

first: Amit

last: Kulkarni

address: 401 Terry Ave N

department: Genomics

institute: Rosetta Inpharmatics / Merck Pharmaceuticals

organism: Rattus norvegicus

description:
Oligonucleotide array on glass.
Contains 60-mer probes (60-mer).

first: John

last: Castle

manufacture_protocol: See manufacturer's website (www.agilent.com)


title: MEEBO 16Mm

status: Public on Mar 07 2012

city: San Francisco

first: Andrea

middle: J

last: Barczak

address: 1550 4th St Rock Hall 545

institute: UCSF Sandler Center Functional Genomics Core Facility


title: Agilent-028279 SurePrint G3 Rat GE Microarray 8x60K

status: Public on Mar 25 2012

city: Gainesville

first: Vipa

last: Bernhardt

state: FL

address: 1600 Archer Rd

institute: University of Florida

first: Barbara

middle: K

last: Smith

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: NimbleGen Woodchuck Gene Expression HX3 Microarray

status: Public on Apr 11 2012

city: Nutley

first: Donavan

last: Cheng

state: NJ

address: 340 Kingsland Ave

department: Translational Research Sciences

institute: Hoffmann-LaRoche

organism: Marmota monax

description:
After filtering the probe sets by a BLASTN E-value <1e-5 and compression by HomoloGene symbol, 13,448 human homologs were represented on the custom chip. In addition, probe sets which detect WHV polymerase (nt. 258-1750), mature WHsAg (nt. 296-920), WHsAg signal peptide (nt. 2992-3226), WHx (nt. 1503-1887) and WHcAg (nt. 2077-2587) of the WHV7-11 (NC_004107.1) sequence were also included on the chip.

Custom microarray generated from sequences obtained in transcriptome sequencing of woodchuck liver and peripheral blood mononuclear cells (PBMCs).

manufacture_protocol: The Woodchuck Gene Expression Microarray was designed from 48,933 assembled contigs with an average length of 1044 bases, and 12,101 singletons with an average length of 555 bases (total = 61,034). In addition, sequences from 5 different WHV regions (WHV polymerase, mature and signal peptide regions of WHsAg, WHx and WHcAg) were also submitted for chip design, giving a total of 61,039 sequences. Probes were selected based on uniqueness scores and base pairs composition rules and were laid out on a NimbleGen Custom Gene expression HX3 array. The resulting probe set consisted of 58,763 exemplars representing 59,625 final sequences, while we were unable to select probes for 1382 contigs and 32 singletons. The final array design had 12 probes per transcript for 98% of the used sequences, while 2% had between 1 and 11 probes per transcript resulting in a total of 696,666 probes. All the probes were 60 bases long with an average percent GC of 47% and an average Tm of 79.3°C (range 59.9-100.9°C).


title: 3D-Gene Schizosaccharomyces pombe Yeast Oligo Chip 6k

status: Public on Jun 15 2012

city: Kamakura

last: Kondo

state: Kanagawa

address: Tebiro 6-10-1

department: New Projects Development Division

institute: Toray Industries,Inc.

organism: Schizosaccharomyces pombe

manufacture_protocol: See manufacturer's web site (www.toray.com).


title: Agilent-024708: Drosophila euchromatic probes, plus potential heterochromatin

status: Public on Mar 06 2012

city: Princeton

first: Bing

last: He

address: Washington Rd

department: Molecular Biology

institute: Princeton University

description: In order to acquire potential Drosophila heterochromatin sequences for microarray construction, DNA libraries were prepared from approximately 250 2L- and 2R- embryos collected at the cellular blastoderm or early gastrulation stages, before the heterochromatin is underreplicated. The embryos were dechorionated and digested with proteinase K prior to sodium acetate/ethanol precipitation. DNA was sheared on a Covaris S2 instrument to a mean length of 200 bp, end repaired and ligated to adaptors for Illumina sequencing. The resulting short sequence reads were mapped to the Release 5 reference Drosophila genome using BWA with default settings (Li and Durbin, 2010). Sequences that mapped to the euchromatic arms and the heterochromatin sequences contiguous with the euchromatic arms ( h ) were removed. The remaining sequences, which were considered probable unmapped heterochromatic sequence, were assembled into contigs using SSAKE (Warren et al. 2007).  The reads were first quality trimmed using SSAKE provided scripts to require at least 20 consecutive bases above a threshold value of 10. The SSAKE assembly was run using default parameters. Custom microarrays were designed for manufacture by Agilent. Assembled contigs of 60 nt length or greater following masking by DUST were passed to ArrayOligoSelector (http://arrayoligosel.sourceforge.net/) for probe design, using a database of all assembled contigs plus the Drosophila genome as the background set used to determine the maximally unique probe for each contig sequence (Bozdech et al., 2003). Probe sequences were supplied to Agilent for manufacture of custom microarrays, available as Agilent design ID 024708. About 80,000 60-mer nucleotide probes were selected corresponding to the assembled contigs, including both forward and reverse complements in order to allow for use in subsequent expression analysis (~ 20,000 reverse probes that were not expressed were later removed from the microarray design). The microarray also contains ~23,000 probes designed by Agilent for expression sequences (annotated genes) covering the entire reference genome as reference probes.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-024708: Drosophila euchromatic probes, plus potential heterochromatin [Probe name version]


title: Agilent-027929 AI_hybridCell_17q21_v3

status: Public on Jun 02 2012

first: Andy

last: Itsara

state: WA

address: Foege Building S-250, Box 355065, 3720 15th Ave NE

department: Genome Sciences

institute: University of Washington School of Medicine

description:
Custom Design for hybing hybrid cells to determine 17q21 breakpoints.

Arrays of this design have barcodes that begin with 16027929 or 2527929.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: TaqMan® Human MicroRNA Array v2.0 A/B

status: Public on May 14 2012

last: Shen

address: 145 Shan Dong Middle Road

department: Department of Rheumatology

institute: Renji Hospital, JiaoTong University School of Medicine

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Agilent-014068 Homo sapiens 185K microarray

status: Public on Mar 02 2012

city: Newcastle Upon Tyne

first: Vikki

last: Rand

state: Tyne and Wear

address: Paul O'Gorman Building, Newcastle University

department: Northern Institute for Cancer Research

country: United Kingdom

institute: Newcastle University


title: Agilent-015223 Rat Genome CGH Microarray 244A

status: Public on Mar 16 2012

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description:
Rat Genome CGH Microarray 244A

Arrays of this design have barcodes that begin with 16015223 or 2515223.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-033023 Hzea_Virus_2directions [Feature Number Version]

status: Public on Feb 29 2012

city: Brisbane

first: Quan

middle: Hoang

last: Nguyen

state: Queensland

address: Queensland Bioscience Precinct (Building 80) The University of Queensland. 306 Carmody Road. St

department: Australian Institute for Bioengineering and Nanotechnology

institute: The University of Queensland

organism: Helicoverpa zea

description: 29,586 H.zea transcript sequences obtained from denovo assembly were reverse transcribed and then combined with the original sequences to form a final target sequence file that contains 59,172 sequences. Based on these 59,172 sequences, eArray was used to design 3 probes per target, with the options for best distribution method and no 3' bias. Then, all probes with potential cross hybridization were removed, resulting in 153,492 probes. This probe set was divided into 3 probe groups (eArray probe format: complete, Ms-excel), each contains 60,000, 60,000 and 33,000 probes.  Another probe set for 135 virus genes and 16 selected insect genes (3 probes/target), which were replicated 10 times. These four probe groups were then used to design the 4x180,000 Agilent arrays.


title: Agilent Mouse 8 x 6 array AMADID: 29686

city: New Delhi

first: Rohini

last: Muthuswami

address: Room# 333, School of Life Sciences, JNU

department: School of Life Sciences

institute: Jawaharlal Nehru University

manufacture_protocol: Please refer to www.chem.agilent.com


title: SGDB Yeast 15.36K Operon

status: Public on Feb 17 2012

city: Prague

first: Michal

last: Cap

address: Vinicna 5

department: genetics and microbiology

country: Czech Republic

institute: Faculty of Science, Charles University in Prague

manufacturer: ENS SGDB (Ecole Normale Superieure, Paris, France)

manufacture_protocol:
Slide spotted using BioRobotics spotting machine and arrayer software TAS aplication suite  MicroGrid II v 2.2.2.3 (Genomic Solution)
Spotting conditions: Temperature of 20¡C more or less 5¡C. Hygroscopy of 50% more or less 5%.
Before each spotting:
1. Printing tips (Geneworx 10k) are tested on glass slides.
2. The spotting robot is put in operation and water tanks filled with distilled water.
3. Corning glass slides are deposited on plates.
4. The spotting program specific for each slide bacth is launched.
For spotting oligonucleotides from Operon Yeast Genome Oligo Set version 1.1.2 (Eurofins MWG Operon) are used
After the spotting process, spots of the first and last slides are visualized using SYBR Green labelling.


title: Agilent-016162 PEDB Whole Human Genome Microarray 4x44K [Probe Name version]

status: Public on Jul 03 2012

first: Ilsa

last: Coleman

address: 1100 Fairview Ave N, E2-112

department: Human Biology

institute: Fred Hutchinson Cancer Center


title: KTH human operon 34k spotted array

status: Public on Feb 28 2012

city: Stockholm

first: Daniel

last: Klevebring

address: Nobels väg 12A

department: Medical Epidemiology and Biostatistics

institute: Karolinska Institutet

manufacture_protocol: In-house printed array using the Genetix printer.


title: Affymetrix Genome-Wide Human SNP 6.0 Array

status: Public on Mar 20 2012

city: Cambridge

first: Nicolas

last: Stransky

state: MA

address: 7 Cambridge center

department: Cancer Program

institute: Broad Institute

description: Annotations correspond to hg18 (NCBI 36.1)

manufacture_protocol: see manufacturer's web site


title: Agilent-027478 Homo sapiens 420K HOTSPOT3.1_SG

status: Public on Sep 30 2012

first: Megan

middle: Y

last: Dennis

address: 3720 15th Ave NE

department: Department of Genome Sciences

institute: University of Washington

description:
Arrays of this design have barcodes that begin with 16027478 or 2527478.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Human Whole Genome OneArrayTM v4 DNA Microarray

status: Public on Feb 01 2012

city: La Jolla

first: suping

last: zhang

state: CA

address: 8955 health science Dr

department: Medical school

institute: UCSD


title: Agilent-024081 Hopkins/TRC human shRNA Array

status: Public on Feb 10 2012

city: Taipei

first: Yu-yi

last: Lin

address: R809, No.1 Jen-Ai Road Section 1

country: Taiwan

institute: National Taiwan University College of Medicine

description:
Agilent AMADID024081
TRC website: http://www.broadinstitute.org/rnai/public/ for shRNA sequence search.

first: Jef

middle: D

last: Boeke

manufacture_protocol: Comprehensive array containing TRC1.0 human shRNA half-hairpin probes for deconvolution of mulplex RNAi screen. Each probe contains the specific 21-nucleotide antisense-strand sequence of each shRNA along with one nucleotide immediately flanking both 5’ (a G nucleotide) and 3’ (a C nucleotide) ends. The probes also contained a stretch of 60-nucleotide linker sequence to attach the slide surface, and were randomly distributed across the array. The customized microarray slides were synthesized by Agilent at a density of 4 x 180,000 (4 subarrays containing 180k probes each).


title: [MouseNsp] Affymetrix mouse 150K Nsp SNP mapping array

city: Boston

first: Alexander

last: Gimelbrant

address: 450 Brookline Ave

institute: Dana-Farber Cancer Institute

description:
There arrays were developed in the laboratory of Mark Daly in collaboration with Affymetrix. See Kirby et al. 2010 Genetics 185:1081-95 (PMID 20439770).
Also see http://www.broadinstitute.org/mouse/hapmap
and
http://www.broadinstitute.org/mouse/hapmap/Flanks_And_Mappings.txt.gz
for detailed information on assessed SNPs.

Based on NCBI mouse genome build 33.

manufacture_protocol: Same technology as used for the Human 250K Mapping Nsp array.


title: Derived from GPL7088 - CCDTM Hs_CCDTM36k

city: Doha

first: Francesco

last: Marincola

address: Al Nasr Tower, AL Corniche Street, PO Box 26999

institute: Sidra Medical and Research Center

manufacture_protocol: Microarrays are printed with GeneMachines robotic arrayer from Genomic Solutions (http://www.genomicsolutions.com) that is fitted with a printhead containing 48 SMP3 printing pins from Telechem International (http://www.arrayit.com). The human oligo probe set is purchased from Operon Human Genome Array-Ready Oligo Set[tm] (AROS) Version 4.0 which contains 35,035 oligonucleotide probes, representing approximately 25,100 unique genes and 39,600 transcripts excluding control oligos. The human version 4.0 is constructed based on the Ensembl human database build (NCBI-35c), with a full coverage on NCBI human Refseq dataset (04/04/2005). In addition, it integrates a significant portion of unique full-length cDNA clone sequences from H-Invitational Database (release 1.8). The microarray spot densities are 157.5 microns (center-to-center), and one spot is printed per probe per slide. The microarrays are printed on Epoxy coated slide (ThermoFisher) and post processed according to manufacture instruction.


title: Agilent-032482 Homo sapiens K_project (Feature number version)

status: Public on Jan 01 2012

city: Gosselies (Charleroi)

first: Bernard

last: Grisart

address: Avenue Georges Lemaitre,25

department: Centre de génétique humaine

institute: Institut de pathologie et de génétique

description:
Arrays of this design have barcodes that begin with 16032482 or 2532482.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent_026818 custom 415K mouse CGH (Probe Name version)

status: Public on Jan 15 2012

city: Houston

first: Alexei

last: Protopopov

state: TX

address: 1901 East Rd

department: IACS

institute: UT MD Anderson Cancer Center

description:
Belfer Institute for Applied Cancer Sciences.
Custom 2x415K array for mouse array-CGH.

Probe coordinates are based on genome build UCSC mm9.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL15108

first: John

last: Zhang

first: Lynda

last: Chin

relation: Alternative to: GPL15108 (Feature Number version)


title: Agilent custom 415K mouse CGH [design id 026818]

status: Public on Jan 14 2012

description:
Belfer Institute for Applied Cancer Sciences.
Custom 2x415K array for mouse array-CGH.
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
Probe coordinates are based on genome build UCSC mm9.
The ID column represents the Agilent Feature Extraction feature number.

relation: Alternative to: GPL15128 (Probe Name version)


title: Agilent-028073 gencode_ncrna_8x60_1

status: Public on Jan 10 2012

city: Barcelona

first: Rory

last: Johnson

state: Catalonia

address: Calle Dr Aiguader, 88

department: Bioinformatics and Genomics

institute: Centre for Genomic Regulation

description:
Arrays of this design have barcodes that begin with 16028073 or 2528073.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Derived from GPL9545 - The Genome Center at Washington University, Candida albicans 20K array

first: Huei-Fung

last: Tsai

address: 10 Center Dr. Bldg. 10 Rm. 11N228

department: LCID

institute: NIH/NIAID

organism: Candida albicans

manufacture_protocol: See manufacturer's website: http://genome.wustl.edu/services/microarray/candida_albicans


title: Rat 10K gene set

status: Public on Dec 23 2011

city: Stillwater

first: Tingting

last: Weng

state: OK

address: 264 McElroy Hall

department: Physiological Sciences

institute: Oklahoma State University

first: Tisha

last: Posey

first: Zhongming

last: Chen

first: Narendranath

last: Chintagari

first: Pengcheng

last: Wang

first: Nili

last: Jin

first: Heidi

last: Stricker

first: Lin

last: Liu

manufacture_protocol:
1.  The Pan Rat 10K Oligonucleotide Set (MWG Biotech Inc., High Point, NC, USA) contains aminated 50-mer oligonucleotides.
2. Oligos (25 µM) were amino-modified and resuspended in 3 x SSC printing buffer
3. The oligos represent 6,221 known genes, 3,594 EST and 169 Arabidopsis negative controls.
4. Each oligo was spotted in triplicate on three identical 18 x 18 mm blocks in one slide.  The spot-spot distance was 160 µm and the space between blocks was 4 mm.  Each block consists of 16 subarrays and can be used as an individual slide or replicate.
5.The oligos were arrayed from 26 384-well microplates onto Epoxy glass slides using an OminiGrid 100 arrayer (GeneMachine, San Carlos, CA)
6. To immobilize oligos, the slides were incubated for 2 days at room temperature and 50% humidity
7. Slides were washed one time with 0.2% SDS for 2 min and then three times with ddH2O
8. Finally, slides were incubated in ddH2O for 20 min at 50oC.  Printing spots were uniform as assessed by SYTO-6 staining.


title: Agilent-016475 Patkany genome 4x44K

status: Public on Dec 15 2011

city: Budapest

first: Omar

last: Abdul-Rahman

address: Tüzoltó utca 37-47

department: Department of Medical Chemistry, Molecular Biology and Pathobiochemistry

country: Hungary

institute: Semmelweis University

description:
Arrays of this design have barcodes that begin with 16016475 or 2516475.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: University of Antwerp Danio rerio oligo microarray_Agilent_15k_EBT

status: Public on Dec 20 2011

city: Wilrijk

first: An

last: Hagenaars

state: Antwerp

address: Groenenborgerlaan 171

department: Biology

institute: University of Antwerp

first: Dries

last: Knapen

first: Lucia

last: Vergauwen

first: Donald

last: Benoot

manufacture_protocol: In situ synthesis by printing process Agilent


title: Agilent human SMD Print_1409

status: Public on Dec 01 2011

city: Stanford

first: Minnie

last: Sarwal

address: 703 Welch Road

department: Pediatric Nephrology

institute: Stanford University

manufacture_protocol: Agilent


title: Agilent-027730 180K_UMCG_V2 023363 (Feature number version)

status: Public on Dec 16 2011

city: Groningen

first: Klaas

last: Kok

department: Genetics

institute: UMCG

description:
180K without tier3 probes

Arrays of this design have barcodes that begin with 16027730 or 2527730.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NimbleGen A. thaliana Gene Expression 12x135K Array [090717_Athal_TAIR9_exp]

status: Public on Dec 31 2011

city: Madison

first: Inc

last: Nimblegen Systems

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

organism: Arabidopsis thaliana

description:
Format:12X135K
Build:9
Source: TAIR
System: Arabidopsis thaliana
Probe length: 60mer
Target genes: 39,042
Probes/target: 4
Replicates:1
http://www.nimblegen.com/products/expression/eukarya/athaliana/12x135k/index.html

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: UofToronto-yeastORF-6.4k6

first: Suzanne

last: Komili

address: 44 Binney St.

institute: Harvard University

organism: Saccharomyces cerevisiae

manufacture_protocol: Double-spotted array containing 6,240 yeast ORFs (plus control spots totalling 6.4K).


title: Mouse PancChip 6.2 13K cDNA microarray

status: Public on Nov 01 2011

city: Pittsburgh

first: Taichiro

last: Nishikawa

state: PA

address: 530 45th Street

department: Surgery

institute: University of Pittsburgh

manufacture_protocol: The Mouse PancChip 6 contains approximately 13,000 mouse cDNAs chosen for their expression in various stages of pancreatic development, many of which are not found on commercially available arrays. Many of these clones where chosen to represent every assembly found to be expressed in the pancreas by sequence analysis of Consortium Libraries EPConClones. In addition, well characterized probes amplified from full-length sequence verified transcripts known to be involved in pancreas development and pathways relating to glucose homeostasis are included. More than 90% of the elements on the Mouse PancChip 6 are also expressed in liver, making this array useful for investigators interested in hepatic metabolism. The high level of homology between mouse and rat genes also makes this array suitable for use with tissues or cells derived from the rat. Note that quality control measures have resulted in sequence verification of 96% of the probes on Mouse PancChip 6.


title: Agilent-032447 Custom Human IDH Array

status: Public on Nov 05 2011

city: Leiden

first: Twinkal

middle: Chandubhai

last: Pansuriya

state: Zuid-Holland

address: Albinusdreef 2

department: Pathology

institute: LUMC

middle: C

manufacture_protocol: According to Agilents Array manufacturing Protocol


title: Murine 15K Spotted cDNA array II

status: Public on Nov 16 2011

city: SAN ANTONIO

first: PRETHISH

last: SREENIVAS

address: 8403 Floyd Curl Dr

department: GCCRI

institute: UTHSCSA

manufacture_protocol: pre spotted


title: Murine 15K Spotted cDNA array


title: Decode RNAi Viral Screening Library - Human GIPZ Lentiviral shRNAmir

status: Public on Nov 02 2011

city: sendai

first: imai

last: hiroo

state: Miyagi

address: 4-1 seiryo-machi

department: clinical oncology

institute: tohoku university

manufacture_protocol: See company website: http://www.openbiosystems.com/RNAi/shRNAmirLibraries/DecodeRNAiviralscreening/


title: Human Operon Array

status: Public on Nov 21 2011

city: Lahore

first: Sajida

last: Hassan

address: 87-West Canal bank Road

department: CEMB

country: Pakistan

institute: University of the Punjab

description: OpArrays slides are printed on the same side as the barcode (graphic to the right). The array area is 18mm wide, 54mm long, and is located 8mm from the top of the slide (barcode at bottom). The size and location are compatible with standard 22mm x 60mm cover slips and other equipment for handling microarrays printed on this substrate size.


title: Agilent-029434 hsa_miRNA_v3b

status: Public on Oct 27 2011

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

description:
Arrays of this design have barcodes that begin with 16029434 or 2529434.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Affymetrix GeneChip Rat Genome 230 2.0 Array [custom CDF: Rn230_Rn_UG_v9]

status: Public on Mar 01 2012

city: Berlin

first: Alexander

last: Paliege

address: Philippstr. 12

department: Anatomy

institute: Charité

description: A Custom CDF Version 9 with Unigene based gene definitions was used to annotate the arrays

relation: Alternative to: GPL1355 (Alternative CDF [official])


title: Agilent-027633 hsa_miRNA_v2

description:
Arrays of this design have barcodes that begin with 16027633 or 2527633.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NimbleGen Drosophila melanogaster expression array [090828_Dmel_exp]

status: Public on Oct 14 2011

city: Atlanta

first: Ashley

middle: M

last: Wood

state: GA

address: 1510 Clifton Rd. RRC 1071B

institute: Emory University

description:
Designname = 090828_Dmel_exp
Designid=10545

manufacture_protocol: See manufacturer's website (www.nimblegen.com).


title: Agilent-027451 Nicotiana attenuata 44K [Probe Name version]

status: Public on Nov 25 2011

city: Jena

first: Klaus

last: Gase

address: Hans-Knoell-Strasse 8

department: Molecular Ecology

institute: Max-Planck-Institute for Chemical Ecology

organism: Nicotiana attenuata

description: N. attenuata


title: Capitalbio Human 22K oligo array v1.0 [cat.220010]

status: Public on Oct 15 2011

city: Beijing

first: Lv

last: Yi

address: Haidian District,Tsinghua University

department: School Of Medicine

institute: Tsinghua University

organism: Homo sapiens

description: Catalog# 220010

manufacture_protocol: described in CapitalBio Corporation Manual


title: Agilent S. Cerevisiae reformatted expression array

status: Public on Oct 04 2011

city: san francisco

first: Chris

last: Cain

address: 600 16th street

institute: UC San Francisco

manufacture_protocol: Standard Agilent expression array protocol - The custom array, described here, uses multiple instances of Agilent v2 probes from GPL9825 plus additional tiling probes upstream of selected orfs taken from GPL4130. It does not contain any newly designed probes, and was designed to maximize cost efficiency and accuracy by printing multiple spots onto an 8 x 15k expression array format


title: Agilent-015747 Danio rerio LU/IBL_D.rerio_44k (Feature Number version)

status: Public on Oct 01 2011

city: Amsterdam

first: Oliver

last: Stockhammer

state: NH

address: Meibergdreef 15

department: Medical Microbiology

institute: AMC

manufacture_protocol: the arrays were produced according to manufacturer's protocol, check website: http://www.chem.agilent.com/en-US/products/instruments/dnamicroarrays/pages/default.aspx


title: UNAM HUMAN 10K v1.0 (condensed version)

status: Public on Sep 30 2011

city: rio de janeiro

first: renata

middle: torres de

last: paiva

state: rio de janerio

address: cidade universitária, centro de tecno

department: Biomedical Engeneering

country: Brazil

institute: Federal University of Rio de Janeiro

description: An alternative version of this platform is assigned accession number GPL4270

manufacturer: Unidad de Microarreglos de DNA - UNAM - Mexico

manufacture_protocol: 50 mer oligos purchased from MWG, collection A. 10000 oligos. Number of applications 2, total number of applications 20000, array area 18X36 mm, distance between applications 185uM. Bio-Rad Versarray chipwriter hardware


title: Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1

status: Public on Oct 08 2011

city: College Station

first: Ryan

last: Doan

state: Texas

address: 4467 TAMU

institute: Texas A&M University

organism: Equus caballus

description:
Arrays of this design have barcodes that begin with 16027318 or 2527318.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Genotypic Technology designed Custom Agilent Gene Expression Drosophila 8x15k array (Agilent-AMADID-20441)

status: Public on Sep 28 2011

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

first: Mugasimangalam

last: Raja


title: BCBC Mouse promoter array 5A (March 2005 version)

status: Public on Sep 08 2011

city: Badalona

first: Lauro

last: Sumoy

state: Barcelona

address: Ctra. Can Ruti, Camí de les escoles s/n

department: High Content Genomics and Bioinformatics

institute: IGTP

description:
BCBC (Beta Cell Biology Consortium, http://genomics.betacell.org/gbco/home.jsp)
The BCBC-5A chip (March 2005 version) contains 7549 PCR products coresponding to proximal and distal promoter regions of well characterized genes represented by either a 1 kb or 2 kb tile, PCR amplified from genomic material. Promoter regions were determined from full length cDNA libraries and Reference Sequences (RefSeqs).

manufacturer: University of Pennsylvania School of Medicine I.D.O.M. Functional Genomics Core laboratory, directed by Klaus H. Kaestner


title: Agilent-017845 Rice

city: Gent

first: David

last: De Vleesschauwer

address: Coupure Links 653

department: Crop Protection

institute: Ghent University

organism: Oryza sativa

description: Oryza sativa subsp. Japonica Cultivar: Nipponbare


title: Doudna S. cerevisiae AROS YBOX 2K v 1

status: Public on Sep 05 2011

city: Cambridge

first: Joshua

last: Arribere

address: 31 Ames St

institute: MIT

manufacture_protocol:
This array has features for all Saccharomyces cerevisiae genes as well as several additional intron, intergenic, and control features. Each unique oligo is spotted twice on each chip. For details about the printing process and the oligos utilized see the Center for Advanced Technology at the University of California, San Francisco website: http://cat.ucsf.edu/resources/index.html.
Custom microarrays were printed at the University of California, San Francisco, Center for Advanced Technology (UCSF CAT) using the AROS and YBOX oligonucleotide sets. Detailed printing protocols and details about the oligos used are available at: http://cat.ucsf.edu/resources/index.html
Surface type: polylysine
Substrate type: glass


title: Agilent-019412 S. cerevisiae oligo microarray

status: Public on Sep 12 2011

description:
Arrays of this design have barcodes that begin with 16019412 or 2519412.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Affymetrix GeneChip Human Genome HG-U133 Plus 2 Array [Hs133P_Hs_ENTREZG_8.cdf]

status: Public on Sep 20 2011

city: Cold Spring Harbor

first: Weijun

last: Luo

state: NY

address: 1 Bungtown Rd

institute: Cold Spring Harbor Lab

description: This is identical to GPL570 but a custom CDF environment was used to extract data

manufacture_protocol: see manufacturer's web site


title: Custom Rosetta-Affymetrix Human platform [rmhu01aa520485]

status: Public on Aug 31 2011

city: Vancouver

first: Raj

last: Chari

state: BC

address: 675 West 10th Avenue

department: Cancer Genetics and Developmental Biology

institute: BC Cancer Research Centre

description: Custom Affymetrix array spotted by Rosetta Impharmatics.  This array contains 43,737 features corresponding to 39,003 unique accession numbers throughout the genome.

first: Wan

middle: L

last: Lam

first: William

middle: W

last: Lockwood

manufacture_protocol: Rosetta-Affymetrix custom proprietary platform


title: Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Feature Number version)

status: Public on Dec 15 2011

last: Agilent Technologies

organism: Sus scrofa

description:
Sus scrofa (Pig) Oligo Microarray v2

Arrays of this design have barcodes that begin with 16026440 or 2526440.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: German Cancer Research Center human 33K BAC array

status: Public on Aug 15 2011

city: Heidelberg

first: Hendrik

last: Witt

state: BW

address: INF 580

department: Molecular Genetics

institute: German Cancer Research Center

manufacturer: Division of molecular genetics, German Cancer Research Center, Heidelberg, Germany

manufacture_protocol: DOP-PCR products were spotted in triplicate onto NexterionTM Slide E epoxysilane-coated slides (PEQLAB, Erlangen, Germany) using a spotting robot (VersArray ChipWriterTM Pro system,BioRad, Munich, Germany) at 20C and 40% humidity. After spotting, slides were cross-linked,baked for 1 hr at 80C, and cross-linked again.


title: SIMR Drosophila 14655 DM3_6-7-2007

status: Public on Aug 21 2011

city: Kansas City

last: Seidel

state: MO

department: Genomics

institute: Stowers Institute

organism: Drosophila melanogaster

description: Flybase version FB2009_07, r5.20, released August 10, 2009

manufacture_protocol: Drosophila Genome Array Ready Oligo Set version 1.1.1 from Operon Technologies was spotted at 40 uM in 3xSSC onto custom made poly-L-Lysine glass slides following standard procedures using a custom built linear servo robot (Joe Derisi, Chris Seidel).


title: Agilent Mouse 60K lincRNA Array

status: Public on Aug 30 2011

first: Mitchell

last: Guttman

state: MA

address: 7 Cambridge Center

institute: Broad Institute


title: Agilent/ISB Mouse Array 8x60K

status: Public on Aug 12 2011

city: Seattle

first: Burak

last: Kutlu

state: WA

address: 1441 North 34th Street

institute: Institute for Systems Biology

description:
Custom array design.
Design ID: 028333


title: Mus musculus 17K spotting collection oligos v2

status: Public on Aug 09 2011

city: Montpellier

first: Laurent

last: Journot

address: 141 rue de la Cardonille

country: France

institute: MGX - Montpellier GenomiX

description: The Mouse Genome Oligo Set contains 16,463 70mer probes representing 16,463 genes. All probes are designed from the UniGene Database Build Mm 102 (February 2002) and the Mouse Reference Sequence (RefSeq) Database, both developed and maintained at the National Center of Biotechnology Information (NCBI) (http://www.ncbi.nlm.nih.gov).

manufacturer: Montpellier Génopole Microarray core facility

manufacture_protocol: The Mouse Qiagen/Operon Array Ready oligo set Version 2 were spotted using the Amersham Biosciences Lucidea Array spotter on aminosilane-coated mirror glass slides (7 Star, Amersham Biosciences). Negative and positive control oligo were also printed into 24 different sectors of each slide. After printing, the slides were stored at room temperature in a dessicator.


title: PGA Mouse chip 20K oligo array, version 1.1

status: Public on Jul 31 2011

city: Malmö

first: Harry

last: Björkbacka

address: CRC 91:12, UMAS entrance 72

department: Dept. of Clinical Sciences, Malmö

country: Sweden

institute: Lund University

manufacturer: DNA core facility, Center for Computational and Integrative Biology, Massachusetts General Hospital

manufacture_protocol: The PGA mouse v1.1 oligonucleotide (70-mer) array (Massachusetts General Hospital (MGH), Cambridge, MA) , including 19,549 reporters, were printed at the microarray core (MGH) using an Omnigrid printer (Genemachines Inc., San Carlos, CA) from 384-well polystyrene V-bottom plates (Genetix, Charlestown, MA) to Surmodics slides. Oligos were printed in 150 mM sodiumphosphate pH 8.5 with 0.0005% N-lauroyl sarcosine. Oligos were coupled to the activated slides by allowing the aminolinker on the oligos to react over night in a humidity chamber. Unreacted groups on the slide surface were blocked with 150 mM glycine, 0.1 M tris, 0.1% N-lauroyl sarcosine, pH 9.


title: CapitalBio Mouse Genome Array 13K

status: Public on Jun 30 2011

first: Jing-Pian

last: Peng

address: , #1 Beichen West Rd., Chaoyang

department: State Key Laboratory of Reproductive Biology

country: China

institute: Institute of Zoology, Chinese Academy of Sciences

manufacture_protocol: as described in CapitalBio Manual


title: Agilent-015747 Zebrafish 44K Oligo Microarray (Feature Number version)

status: Public on Jul 07 2011

city: Leiden

first: Herman

middle: Pieter

last: Spaink

address: Einsteinweg 55

department: Institute of Biology

country: Netherlands

institute: Leiden University

description:
Grid_GenomicBuild: danRer2:SangerZv4:June2004
FeatureExtractor_DesignFileName: 015747_D_F_20070117.xml


title: Rosetta/Merck Mouse 25k v1.2 extra microarray

status: Public on Jun 14 2011

first: Amit

last: Kulkarni

address: 401 Terry Ave N

institute: Rosetta Inpharmatics / Merck Pharmaceuticals

description:
Oligonucleotide array on glass.
Contains 60-mer probes (60-mer).
Mouse 25k v1.2 extra microarray Merck

first: John

last: Castle

manufacture_protocol: See manufacturer's website


title: Genotypic Technology Custom Designed Drosophila Whole Genome Gene Expression Microarray

status: Public on Jun 01 2011

first: Gaiti

last: Hasan

address: GKVK Campus,

institute: NCBS, TIFR

first: Dey

last: Debleena

first: Kumar

last: Satish

first: Hasan

last: Gaiti

manufacture_protocol: Agilent's Sureprint 60-mer in situ. Visit http://www.opengenomics.com


title: Illumina HumanRef-8 v2 Expression Beadchip 1699538181

status: Public on Aug 23 2011

city: Singapore

first: Sherry

last: Wang

address: 21 Lower Kent Ridge Road

department: Biochemistry

country: Singapore

institute: National University of Singapore

description:
Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 22,000 transcript probes using the HumanRef-8 v2 beadchip.

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data.  These should be submitted as part of a GEOarchive.  Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html

manufacture_protocol: see manufacturer's website


title: Agilent-028100 HumanMacroTreg

status: Public on Jul 16 2011

city: Braunschweig

first: Robert

last: Geffers

address: Inhoffenstr. 7

department: Dep. Molecular Bacteriology

institute: HCI - Helmholtz Centre for Infection Research

description:
combination of target genes specific for macrophages and regulatory T cells extended by targets specific for immune response process (GO)
Arrays of this design have barcodes that begin with 16028100 or 2528100.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: D. melanogaster expression Kim1.0

status: Public on Jul 29 2011

city: San Francisco

first: Charlie

last: Kim

state: CA

address: 1001 Potrero Ave

department: Medicine

institute: University of California, San Francisco

manufacture_protocol: In situ oligonucleotide synthesis


title: NimbleGen Gene Expression Danio Rerio 385k Array [071105_Zv7_EXPR]

status: Public on Jul 01 2011

city: Corvallis

last: Tanguay

state: OR

department: EMT

institute: Oregon State University

description:
NimbleGen design build Zv7 of Zebrafish, with 37,157 target genes. Each probe is replicated 12 times.  The design includes random GC and other control probes.  This platform has 1 array per slide.
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.
designid=6632

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: UCSF/HAQQLAb_Human_40986

status: Public on May 31 2011

first: Mark

last: Magbanua

address: 1450 3rd Street, PO Box 589001

department: HemOnc

institute: UCSF/Helen Diller Familiy Comprehensive Cancer Center

manufacture_protocol: See the following reference for details: Fox, M.S., Ares, V.X., Turek, P.J., Haqq, C. and Pera, R.A.R. (2003) Feasibility of global gene expression analysis in testicular biopsies from infertile men. Mol. Reprod. Dev., 66, 403 – 421.


title: Sigma/Compugen custom rat 70-mer oligonucleotide 8k microarray

city: Vicksburg

last: Wilbanks

state: MS

address: 3909 Halls Ferry Road

department: Environmental Laboratory

institute: US Army Engineer Research and Development Center


title: SWEGENE H_v2.1.1

status: Public on May 17 2011

city: Göteborg

first: Kristina

last: Levan

address: Blå Stråket 2

department: Department of Oncology

institute: University of Gothenburg

manufacture_protocol: Arrays were produced by the Swegene DNA micro array resource center at Lund University by using probes from Operon. Probes were recovered in Corning Universal Spotting Solution and printed on amino-silane-coated glass slides (UltraGAPS from Corning) using a MicroGrid2 robot (BioRobotics).


title: SWEGENE H_v3.0.1


title: Agilent-023774 JHU Homo sapiens HD-CGH Microarray (4X44K) G4426A v1.0

status: Public on May 06 2011

city: Baltimore

first: Qian

last: Jiang

address: 733 N Broadway Street

institute: JHMI

description:
Design ID: 023774
CGH array with ~33,000 test probes at an average resolution of ~185bp.


title: NimbleGen_Stickleback array 385K v1.0

status: Public on Apr 24 2011

city: Urbana

first: Yibayiri

last: Sanogo

state: IL

address: 505 S. Goodwin

department: Integrative Biology

institute: University of Illinois at Urbana-Champaign

organism: Gasterosteus aculeatus

description:
Probes were designed from a total of 72517 sequences. Of these genes, all except 12 sequences had 5 probes per gene.
The Platform data table reflects a condensed representation of the array's replicate features.
The design (.ndf) file and description (.ngd) file are available as Supplementary files (at the foot of this record).  Individual probe sequences available in .ndf file.
The website with information about the GENSCAN predictions is at: http://uswest.ensembl.org/Gasterosteus_aculeatus/Info/StatsTable
GENSCAN predictions can be downloaded at: http://uswest.ensembl.org/info/data/ftp/index.html

manufacture_protocol: Printed using the NimbleGen proprietary Maskless Array Synthesis (MAS) technology on a 385K high-density chip using both the 44,884 in silico genscan predictions and the 27,633 gene transcripts obtained from ENSEMBL v.45.1c.


title: ACRI_Human2_35K [condensed version]

status: Public on Apr 29 2011

city: Halifax

first: Jason

last: Williams

state: Nova Scotia

address: 1411 Oxford Street

department: Institute for Marine Biosciences

institute: National Research Council

first: Rodney

last: Ouellette

first: Miroslava

last: Cuperlovic-Culf

first: Adrian

last: Culf

first: Daniel

last: Leger

manufacture_protocol:
Human DNA probes were synthesized at the Atlantic Microarray Facility (Moncton, NB, Canada) by the phosphoramidite method at a 40 nmole scale on a Gene Machines PolyPlex 2 oligonucleotide synthesizer (Genomic Soutions, Ann Arbor, MI, USA). Isolated DNA was analyzed by ESIElectrospray ionisation-Mass Spectrometry using an Agilent VL1100MSD mass spectrometer (Agilent Technologies, Inc., Mississauga, ON, Canada). DNA of low quality was re-synthesized. The human probes spotted in side –by-side duplicate on epoxide microarray slides (Schott) to give 34944-feature microarrays. An OmniGrid 100 microarrayer (Genomic Solutions) equipped with SMT-S50 silicon print pins (Parallel Synthesis Technology, Santa Clara, CA, USA) was used.
Spotted microarrays were analyzed by SpotQC (IDT Inc., Coralville, IA, USA) for any defects in spotting that may have occurred. Microarrays were stored at room temperature in vacuum-sealed microarray pouches (Corning Inc., Corning, NY, USA).


title: SWEGENE mouseV4_37K_withControls

status: Public on Apr 19 2011

city: Lund

first: Johan

last: Staaf

address: Medicon Village

institute: SCIBLU - Swegene Centre for Integrative Biology at Lund University

organism: Mus musculus

first: Ake

last: Borg


title: Wistar Institute Ursus americanus 9.6 k BA02

status: Public on May 10 2011

city: Shanghai

first: Haifang

address: 320 yueyang road

department: CAS-MPG Partner institute for Computational Biology

institute: Shanghai institute for biology science

organism: Ursus americanus

description: All our EST's for the array are submitted to National Center for Biotechnology Information (NCBI), http://www.ncbi.nlm.nih.gov/nucest (GW276093-GW314849)

first: Vadim

last: Fedorov

first: Anna

last: Goropashnaya

first: Øivind

last: Tøien

last: Stewart

first: Celia

last: Chang

first: Jun

last: Yan

first: Louise

last: Showe

first: Michael

first: Brian

last: Barnes

manufacture_protocol: cDNA spot array on nylon membrane http://www.wistar.org/research_facilities/facilities/genomics/review.html


title: ACRI_Human2_35K [full layout version]

status: Public on Apr 18 2011


title: HKG SigmaCompugen Mouse 7.5K v1.0

status: Public on Apr 02 2011

first: Anja

last: Schiel

address: Einthovenweg 20

department: Human Clinical Genetics

institute: Leiden University Medical Center

middle: E

first: Silvia

last: Bijland

first: Sjoerd

middle: A

last: van den Berg

first: Peter

last: Voshol

first: Louis

last: Havekes

first: Rune

middle: R

last: Frants

first: Ko

last: Willems van Dijk

manufacture_protocol: Oligonucleotides dissolved in 50% DMSO were deposited with an Omnigrid contact printer on poly-L-lysine coated glass slides, printed in duplicate


title: Agilent custom 2 x 415K human CGH

status: Public on Mar 31 2011

city: Houston

first: Alexei

last: Protopopov

state: TX

address: 1901 East Rd

department: IACS

institute: UT MD Anderson Cancer Center

description:
Belfer Institute for Applied Cancer Sciences
Custom 2x415K array for human array-CGH
Arrays of this design have barcodes that begin with 16023357 or 2523357.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
Probe coordinates are based on genome build UCSC hg18
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

first: Jianhua

last: Zhang

first: Lynda

last: Chin


title: Compugen Homo sapiens 19K long-oligo ATC2

status: Public on Apr 01 2011

city: New York

first: Sally

last: Amundson

department: Center for Radiological Research

institute: Columbia University

manufacturer: Microarray Core of the National Human Genome Research Institute (NHGRI)/NIH

manufacture_protocol: Long oligonucleotides of the Compugen Human Oligo Library were robotically arrayed onto epoxy coated slides (MWG Biotech) using the conditions suggested.  A detailed description of array manufacturing protocols can be found at (http://www.nhgri.nih.gov/DIR/Microarray/main.html).


title: GynObsLU Human 800 PE-associated cDNA

status: Public on Feb 28 2011

city: Uppsala

first: Katja

last: Junus

address: University Hospital

department: Department of Women's and Children's Health

institute: Uppsala University

manufacturer: Swegene DNA Microarray resource center at Lund University

manufacture_protocol:
cDNA clones were amplified using QuantiTaq™ polymerase and M13F / M13R primers as described by the manufacturer's protocol (GeneCopoeia, Germantown, USA).
For each reaction, 5 μl plasmid templates were mixed with 1× PCR reaction buffer (Cat No. QU-02-10 GeneCopoeia), 0.2 mM dNTPs (Cat No. QT-04-250 GeneCopoeia), 1 μM of M13F / M13R primer respectively, 1.5mM MgCl2 and 1 U QuantiTaq polymerase (Cat No. QT-01-500 GeneCopoeia). PCR amplification was conducted with one cycle of 2 minutes of initial heating to 96°C, 29 cycles of denaturing at 94°C for 1 minute, annealing at 55°C for 30 seconds, and extension at 72°C for 2 minutes, and one final cycle of holding at 72°C for 5 minutes. PCR products were purified using the NucleoFast 96 PCR Clean-Up Kit (ClonTech, Mountain View, USA). Briefly, PCR product was transferred to a NucleoFast 96 PCR plate and contaminants were filtered through by means of vacuum pressure. Membranes were washed once with 100 μl of nuclease-free water after which membranes were dried. Purified PCR product was recovered by adding 80μl recovery buffer and incubating the plates on shaker for 10 minutes. PCR products were verified on 1.2% agarose gels, 1.2g agarose, 100ml 1× TAE buffer (40mM tris pH 8.3, 1mM EDTA) and 6μl etidium bromide using 1× TAE as running buffer.
Microarrays printed with our 800 cDNA-clones as well as an oligoset containing 27,000 oligos (OPERON v 2.1 human 70 mer oligo set, Operon, Huntsville, USA) were produced at the Swegene DNA Microarray Resource Center, Department of Oncology, Lund University, Sweden. Our 800 clones were printed in three replicates on each slide as a mean of quality control, allowing us to remove spots affected by local artifacts. Probes were dissolved in Corning Universal Spotting solution (Corning, Acton, USA) and printed on aminosilane coated glass slides (UltraGAPS, Cat. No. C40017, Corning) using a MicroGrid2 robot (BioRobotics, Cambridgeshire, UK) equipped with MicroSpot 10K pins (BioRobotics). Following printing, arrays were placed in a desiccator to dry for 48 hours, rehydrated for 1 second over steaming water, snap dried on a hot plate (98°C), and UV cross-linked (800mJ/cm2).


title: Operon OpArray - Mus Musculus - 38k v4.0.3

status: Public on Apr 20 2011

city: Regensburg

first: Matthias

last: Maneck

address: Franz-Josef-Strauß-Allee 11

department: Department of Pathology

institute: University of Regensburg

manufacture_protocol: according to manufacturer