status: Public on Oct 30 2015

city: Sutton

first: Anguraj

last: Sadanandam

state: Surrey

address: 15 Cotswold Road

department: Molecular Pathology

country: United Kingdom

institute: Institute of Cancer Research (ICR), London

organism: Homo sapiens

technology: spotted oligonucleotide

description: microRNA microarray (Ohio State University Comprehensive Cancer Center, version 2.0) contains probes for 460 mature microRNAs spotted in quadruplicate (235 homo sapiens, 222 mus musculus, and three Arabidopsis thaliana) with annotated active sites.

distribution: custom-commercial

manufacture_protocol: Ohio State University Cancer Center


title: SDAU Custom chicken expression array

status: Public on Apr 29 2016

city: Tian'an

first: XIANYAO

last: LI

address: No. 61  Daizong Street,

department: Department of Animal Science

country: China

institute: Shandong Agricultural University

organism: Gallus gallus

technology: in situ oligonucleotide

first: Xianyao

last: Li

first: Huaijun

last: Zhou

manufacture_protocol: see Agilent website


title: Illumina HiSeq 1000 (Lactococcus lactis subsp. lactis)

last: GEO

country: USA

organism: Lactococcus lactis subsp. lactis

technology: high-throughput sequencing

distribution: virtual


title: Affymetrix GeneChip Mouse Genome 430 2.0 Array based on a custom CDF (Mouse4302_Mm_ENTREZG_19.0.0)

status: Public on Sep 13 2016

city: Padova

first: Silvio

last: Bicciato

address: via U. Bassi 59/b

department: Molecular Medicine

country: Italy

institute: University of Padova

organism: Mus musculus

manufacture_protocol: see manufacturer's web site


title: UHN Yeast 6.4Kv7

status: Public on Feb 02 2016

city: Paterna

first: Elisabet

last: Navarro

address: avda Agustin Escardino 7

country: Spain

institute: Institute of Agrochemistry and Food Technology (IATA-CSIC)

organism: Saccharomyces cerevisiae

technology: spotted DNA/cDNA

distribution: non-commercial

manufacture_protocol: cDNA double-spotted in 48 grids on UltraGAPS slides (Corning, Inc.)


title: Qiagen custom RT2 Profiler Array

status: Public on Dec 21 2015

city: Berlin

first: Jeroen

last: Maertzdorf

address: Chariteplatz 1

country: Germany

institute: MPIIB

technology: RT-PCR

description:
Custom PCR assay panel
Qiagen RT2 Profiler Assay

manufacture_protocol: see manufacturer's handbook


title: JCVI PFGRC Pseudomonas aeruginosa 18K v1

status: Public on Dec 02 2015

city: Bozeman

first: Kerry

middle: S

last: Williamson

state: Montana

address: 109 Lewis Hall

department: Microbiology and Immunology

institute: Montana State University

organism: Pseudomonas aeruginosa

manufacture_protocol: Pseudomonas aeruginosa Version 1 70-mer glass slide DNA microarrays were obtained from JCVI, formerly The Institute for Genomic Research. This set includes 5552 oligonucleotides, and has 18720 spots distributed in 72 blocks, with 3 replicate oligo printings. Oligos were spotted onto glass slides and there is an epoxy surface coating.


title: Illumina HiSeq 2500 (Aspergillus niger)

organism: Aspergillus niger


title: 18.5K human oligo microarrays obtained from the Ohio State University Cancer Center


title: RiboArray lncDETECT Mouse Array 1X90K

status: Public on Oct 29 2015

city: Dongguan

first: Yu-ning

last: Chen

address: Xin Cheng Avenue 1#, Songshan Lake

institute: Guangdong Medical University

manufacturer: CustomArray Inc. CustomArray B3 Synthesizer


title: Agilent-027064 SurePrint G3 Rat CGH Microarray 4x180K (Probe name version)

city: Palo Alto

last: Agilent Technologies

state: CA

institute: Agilent Technologies

organism: Rattus norvegicus

description:
SurePrint G3 Rat CGH Microarray 4x180K

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL10451

distribution: commercial

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/ .


title: [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array [CDF: Brainarray V.10, Mm430A_Mm_ENTREZG_v19]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description:
This array is identical to GPL8321 but a custom, remapped CDF environment is used to extract data. This is version 19 of the remapped CDF. The CDF for various platforms can be found at the link below.
For the CDF file based on Entrez Gene:
For detailed description please see the paper and website.


title: LC Sciences Mus musculus CU-JSUB-LC-miRMouse_20

status: Public on Oct 28 2015

city: New York

first: Jianbo

last: Sun

state: NY

institute: Columbia University


title: Agilent-039494 8x60k Human Whole Genome Microarray Gene expression  (Probe name version)

status: Public on Apr 30 2016

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

description: Agilent-039494 8x60k Human Whole Genome Microarray Gene expression  (AMADID: 039494)


title: Illumina Miseq (Gluconobacter oxydans)

organism: Gluconobacter oxydans


title: Illumina HiSeq 2500 (Penicillium chrysogenum)

organism: Penicillium chrysogenum


title: Illumina HiSeq 2500 (Salmonella enterica subsp. enterica serovar Typhimurium)


title: LC_MRA-1004_miRZebrafish_13.0_090309

city: Houston

first: Christoph

last: Eicken

state: TX

address: 2575 W. Bellfort

institute: LC Sciences, LLC

organism: Danio rerio

manufacture_protocol: Zebrafish miRNA microarray with 100% coverage of mature plant miRNAs listed in miRBase version 13.0. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.


title: Illumina HiSeq 2000 (Dunaliella salina)

organism: Dunaliella salina


title: Illumina HiSeq 2500 (Citrus maxima)

organism: Citrus maxima


title: Illumina Genome Analyzer IIx (Polypterus senegalus)

status: Public on Oct 27 2015

organism: Polypterus senegalus


title: Illumina HiSeq 2000 (Arabidopsis)

organism: Arabidopsis


title: Ion Torrent Proton (Phytophthora infestans)

status: Public on Oct 26 2015

organism: Phytophthora infestans


title: Illumina HiSeq 2000 (Bacteroides xylanisolvens)

organism: Bacteroides xylanisolvens


title: Illumina HiSeq 2500 (Candida glabrata)

organism: Nakaseomyces glabratus


title: Illumina HiSeq 2000 (Rhodosporidium toruloides)

status: Public on Oct 23 2015

organism: Rhodotorula toruloides


title: Illumina MiSeq (human lung metagenome)

organism: human lung metagenome


title: Agilent-046961 Bacillus subtilis MAD-BS168-1-Agilent-E-15

status: Public on Oct 25 2015

city: Amsterdam

first: Martijs

last: Jonker

address: Science Park 904

department: Microarray Department

country: Netherlands

institute: University of Amsterdam

organism: Bacillus subtilis

description:
Arrays of this design have barcodes that begin with 16046961 or 2546961.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2500 (Citrus sinensis)

organism: Citrus sinensis


title: Illumina HiSeq 2000 (Citrus x paradisi)

status: Public on Oct 19 2015

organism: Citrus x paradisi


title: NanoString nCounter Gene Expression Human PD 113 list

status: Public on Oct 17 2015

first: Maria

middle: D

last: Chikina

address: One Gustave L. Levy Place

institute: Icahn School of Medicine at Mount Sinai

organism: Homo sapiens

technology: other

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Illumina HiSeq 2500 (Brachypodium distachyon)

status: Public on Oct 21 2015

organism: Brachypodium distachyon


title: miRCURY LNA microRNA Array, v11.0

city: Ottawa

first: John

middle: Paul

last: Pezacki

state: ON

address: 150 Louis-Pasteur Pvt

department: Chemistry and Biomolecular Sciences

country: Canada

institute: University of Ottawa

manufacture_protocol: Microarrays were manufactured as previously described (Am J Neurodegener Dis. 2014; 3(1): 33–44).


title: Illumina HiSeq 2000 (Daphnia magna)

organism: Daphnia magna


title: [X_laevis_2] Affymetrix Xenopus laevis Genome 2.0 Array

status: Public on Aug 03 2010

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Xenopus laevis

description: Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html


title: Agilent-062494 Genotypic Zea mays 4x180K GE ArrayDesign

city: Cluj-Napoca

first: Simona

last: Visan

state: Cluj

address: 34-36 Republicii

department: Functional Genomics, Proteomics and Experimental Pathology

country: Romania

institute: The Oncology Institute “Prof Dr. Ion Chiricuta”,

organism: Zea mays

description:
Zea mays

Arrays of this design have barcodes that begin with 16062494 or 2562494.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Nimblegen Maize 120K array v1.0

status: Public on Oct 24 2015

city: Iowa City

first: Erin

last: Irish

state: IA

address: 129 E. Jefferson St.

department: Biology

institute: University of Iowa

description:
120330_Zmaize_EI_exp.ndf
120330_Zmaize_EI_exp.ngd

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 2000 (Nasonia vitripennis x Nasonia giraulti)

last: GEO

organism: Nasonia vitripennis x Nasonia giraulti


title: Illumina HiSeq 1000 (Acipenser sturio)

organism: Acipenser sturio


title: NEFU WangFeng Populus microRNA V1.0

city: Harbin

first: Feng

last: Wang

address: Heilongjiang

department: Forestry

institute: Northeast Fotestry University

organism: Populus x canadensis

manufacture_protocol: Illumina’s TruSeq Small RNA Sample Prep-aration Guide1


title: Illumina HiSeq 2000 (Citrus clementina)

organism: Citrus x clementina


title: Agilent-022825 S.aureus_020409_4x44K

status: Public on Oct 16 2015

city: South San Francisco

first: Mark

last: McCreary

state: California

address: 1 DNA Way, MS 93

department: Bioinformatics

institute: Genentech

organism: Staphylococcus aureus subsp. aureus USA300_FPR3757

description:
S.aureus_012909_base

Arrays of this design have barcodes that begin with 16022825 or 2522825.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NanoString nCounter Gene Expression Mouse PD 175 list


title: Agilent-049158 Salmon Oligo Microarray 8x60K v1 020938

city: Bergisch Gladbach

first: Silvia

last: Rueberg

address: Friedrich-Ebert-Str. 68

department: Genomic Services

institute: Miltenyi Biotec GmbH

organism: Salmo salar

description:
8x60K version of 4x40K predefined Salmon array (ID:020938). Also includes probe group "additional probes" (PGRID:61429)

Arrays of this design have barcodes that begin with 16049158 or 2549158.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2000 (Lactococcus garvieae; Staphylococcus aureus)

status: Public on Oct 14 2015

organism:
Staphylococcus aureus
Lactococcus garvieae


title: Illumina HiSeq 2500 (Pycnoporus coccineus)

organism: Trametes coccinea


title: [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [Ensembl mouse genome build 70 using the R/BioConductor package annmap]

status: Public on Oct 10 2015

city: Manchester

first: Maud

last: Fleury

address: Wilmslow Road

institute: Cancer Research UK Manchester Institute

organism: Mus musculus

description:
Annotations and cross-mappings between probesets, exons and genes were obtained from Ensembl mouse genome build 70 using the R/BioConductor package annmap.
http://annmap.cruk.manchester.ac.uk/download/#mmxmapcore

relation: Alternative to: GPL6096 (Alternative CDF [official])

manufacture_protocol: See manufacturer's web site


title: miRCURY LNA™ microRNA Array 7th Gen [catalog# 208100; miRBase 19.0.43]

city: Glasgow

first: Nuria

last: Terron Canedo

address: Bearsden Road

department: Institute of Infection, Immunity and Inflammation

institute: University of Glasgow, College of Medical, Veterinary and Life Sciences

organism:
Homo sapiens
Equus caballus

description:
Array catalog # 208100
Array batch # 35013

manufacture_protocol: miRCURY LNAª microRNA Array 7th Gen (Exiqon, Vedbaek Denmark). This array comprises 2,164 probes that contain human and viral sequences together with predicted equine microRNA sequences derived from miRBase 19.0.43


title: [100718_MM9_Refseq_Prom_ChIP]  NimbleGen Mouse ChIP-chip 3x720K RefSeq Promoter Arrays (ProbeID version)

description:
Format: 3x720K. Source: UCSC. Build: MM9. Probe length: 50-75mer. Median probe spacing: 100bp
Catalog number: 05924413001


title: Illumina HiSeq 2000 (Lactococcus garvieae)

organism: Lactococcus garvieae


title: Illumina HiSeq 4000 (Cryptococcus neoformans)

organism: Cryptococcus neoformans


title: miRCURY LNA microRNA Array, 7th generation (rno, miRBase 20)

status: Public on Oct 09 2015

city: Vedbaek

first: Michael

last: Thorsen

address: Skelstedet 16

country: Denmark

institute: Exiqon

organism: Rattus norvegicus

manufacturer: Exiqon A/S, Skelstedet 16, 2950 Vedbaek, Denmark

first: Jorg

last: Krummheuer

manufacture_protocol: See Exiqon website


title: miRCURY LNA microRNA Array, 7th generation (mmu, miRBase 20)

organism:
Mus musculus
Murid betaherpesvirus 1
Murid gammaherpesvirus 4


title: Cg3kOLI_S09

status: Public on Oct 22 2015

city: Bielefeld

first: João

middle: M. P.

last: Jorge

address: Universitätsstraße 25

institute: University of Bielefeld

organism: Corynebacterium glutamicum ATCC 13032

manufacturer: Center for Biotechnology, Bielefeld University

manufacture_protocol: Nexterion Slide E microarrays carrying 70mer oligonucleotides (nucleotide sequence is attached as file)


title: Op Human ReadyArray HS1200

status: Public on Oct 15 2015

city: Saskatoon

first: Christopher

middle: H.

last: Eskiw

state: SK

address: 51 Campus Drive

department: Food and Bioproduct Science

institute: University of Saskatchewan

organism: Homo sapiens

manufacture_protocol: Commercial Protocol


title: Illumina MiSeq (Caulobacter vibrioides)

status: Public on Oct 12 2015

organism: Caulobacter vibrioides


title: SABiosciences Mouse p53 Signaling Pathway PCR assay panel

city: San Francisco

first: Andrei

last: Goga

address: 513 Parnassus Ave

department: Cell & Tissue Biology

institute: UCSF

description:
p53 PCR assay panel
SABiosciences RT² Profiler panel of PCR assays.


title: Actinidia chinensis Microarray

status: Public on Oct 13 2015

city: Lincoln

middle: Garry

last: Hill

address: Gerald St

department: Applied Entomology

country: New Zealand

institute: NZ Institute of Plant & Food Research

organism: Actinidia chinensis

manufacturer: New Zealand Institute for Plant & Food Research

manufacture_protocol: See  Crowhurst et al. (2008) BMC Genomics 9: 351


title: miRCURY LNA microRNA Array, 7th generation (hsa, miRBase 20)

organism:
Homo sapiens
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Macacine alphaherpesvirus 1
Human betaherpesvirus 5
human gammaherpesvirus 4
Herpesvirus saimiri (strain 11)
JC polyomavirus
Human immunodeficiency virus 1
Human betaherpesvirus 6B
Human gammaherpesvirus 8
Merkel cell polyomavirus
Betapolyomavirus hominis
Betapolyomavirus macacae


title: Illumina HiSeq 2000 (Escherichia coli 300059)

organism: Escherichia coli 300059


title: Illumina HiSeq 2000 (Escherichia coli 100329)

organism: Escherichia coli 100329


title: Illumina HiSeq 2000 (Escherichia coli 302053)

organism: Escherichia coli 302053


title: Agilent-034585 UDSC M. tuberculosis H37Rv Validated Array (PROBE ID version)

city: Bangalore

first: Amit

last: Singh

address: C V Raman Avenue

department: MCBL

institute: Indian Institute of Science

organism: Mycobacterium tuberculosis H37Rv

relation: Alternative to: GPL16972 (feature number version)


title: Illumina HiSeq 2000 (Escherichia coli 103385)

organism: Escherichia coli 103385


title: Illumina HiSeq 2500 (Vibrio cholerae)

organism: Vibrio cholerae


title: Illumina HiSeq 2500 (Escherichia coli O157:H7 str. EDL933)

organism: Escherichia coli O157:H7 str. EDL933


title: Illumina HiScanSQ (Gallus gallus)

organism: Gallus gallus


title: SABiosciences RT2 Profiler Epithelial-Mesenchymal Transition PCR Array

city: Maplewood

first: Nick

last: Illsley

state: NJ

address: Richmond Ave

institute: Placental Research Group LLC

description:
EMT PCR assay panel
SABiosciences RT² Profiler Panel of PCR assays.


title: Illumina MiSeq (Vibrio cholerae)


title: Illumina HiSeq 2000 (Aedes aegypti)

organism: Aedes aegypti


title: Illumina HiSeq 2000 (Escherichia coli E110019)

organism: Escherichia coli E110019


title: Illumina HiSeq 2000 (Caulobacter vibrioides)


title: Illumina HiSeq 2000 (Escherichia coli C581_05)

organism: Escherichia coli C581_05


title: Illumina MiSeq (riverine metagenome)

status: Public on Oct 08 2015

organism: riverine metagenome


title: Illumina HiSeq 1500 (Xenopus laevis)

status: Public on Oct 20 2015

organism: Xenopus laevis


title: Illumina HiSeq 1000 (Xenopus laevis)


title: Illumina HiSeq 2000 (Avicennia officinalis)

status: Public on Oct 07 2015

organism: Avicennia officinalis


title: Illumina HiSeq 2000 (Leptospira interrogans serovar Copenhageni)

status: Public on Oct 02 2015


title: Synovial protein array 0.341K v1.0

city: Stanford

first: William

last: Robinson

address: 269 Campus Dr

institute: Stanford University

organism:
Homo sapiens
Mus musculus

technology: spotted peptide or protein

manufacturer: Robinson Lab, Stanford University School of Medicine


title: Agilent-016938 Caulobacter 45K Array

status: Public on Oct 01 2015

city: São Paulo

first: Juliana

middle: da Silva

last: Santos

state: SP

address: Avenida Professor Lineu Prestes, 1374

department: Microbiology

country: Brazil

institute: Institute of Biomedical Sciences from University of São Paulo

organism: Caulobacter vibrioides CB15

manufacture_protocol: standard Agilent spotted oligonucleotide arraying


title: Agilent-019415 Human and Custom Viral Transcript Array 1.2 [Probe name version]

city: Bethesda

first: John

middle: A

last: Chiorini

state: Maryland

address: 10 Center Drive, Bldg 10, MSC1190

department: Molecular Physiology and Therapeutics Branch

institute: National Institute of Dental and Craniofacial Research, National Institutes of Health

organism: Homo sapiens

description: Human and viral sequences


title: Agilent-022023 Homo sapiens Prenatal Chip V2 [hg19]

city: Hong Kong

first: Zirui

last: DONG

address: Shatin, N.T.

department: Dept. of Obstetrics and Gynaecology

institute: The Chinese University of Hong Kong

description:
PrenatalChipV2

Arrays of this design have barcodes that begin with 16022023 or 2522023.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe names.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina MiSeq (mouse gut metagenome)

last: GEO

organism: mouse gut metagenome


title: Agilent-035130 Human Fetal Chip V 2.0 [hg19]

description:
Fetal Chip V 2.0

Arrays of this design have barcodes that begin with 16035130 or 2535130.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: SABiosciences RT2 profiler PCR UPR array

status: Public on Oct 06 2015

city: Montreal

first: Johanne

last: Martel-Pelletier

state: Quebec

address: 900 rue St-Denis

institute: CRCHUM

description:
PCR assay panel
SABiosciences RT² Profiler panel of PCR assays.


title: Illumina HiSeq 2500 (Microtus ochrogaster)

organism: Microtus ochrogaster


title: Agilent-028500 Rhagoletis pomonella custom Agilent cDNA array V2

city: Manhattan

first: Gregory

last: Ragland

state: KS

address: 123 West Waters Hall

department: Entomology

institute: Kansas State University

organism: Rhagoletis pomonella

description:
Probesets:
CUST_233_PI425262546: One Reverse complement probe of 5803 unannotated Pomonella transcripts
CUST_4165_PI425262511: One Forward Pomonella probe for 5798 unannotated transcripts (with reverse printed in CUST_233_PI425262546)
CUST_1674_PI425262563: One Forward Pomonella probe for 2393 unannotated transcripts with no reverse printed
CUST_16052_PI425262503: Two Forward Pomonella probes for 14805 annotated transcripts

manufacture_protocol: 60-mer oligo probes designed from R. pomonella EST contigs and singletons using Agilent eArray v2.0 and synthesized in situ by an ink-jet printing (Agilent) method on glass slides.


title: Agilent-068656 human array [hg19]

description:
For Richard 022023 140724  G4126A

Arrays of this design have barcodes that begin with 16068656 or 2568656

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent probe name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Spectral Genomics Constitutional Chip v4

city: Hamilton

first: Caitlin

last: Mills

address: 1280 Main St West

institute: McMaster University

manufacturer: Spectral Genomics (now part of Perkin Elmer)

manufacture_protocol: Spectral Genomics Constitutionnal Chip v4. This array was provided by Perkin Elmer


title: Illumina HiSeq 2000 (Phalaenopsis equestris)

status: Public on Jun 30 2015

organism: Phalaenopsis equestris


title: Illumina HiSeq 2000 (Manacus vitellinus)

organism: Manacus vitellinus


title: Agilent-065426 Thellungiella_8x60K array

city: Freising

first: Erich

last: Glawischnig

address: Emil-Ramann-Str. 8

department: Plant Science

institute: TU Muenchen

organism: Eutrema salsugineum

description:
Thellungiella_8x60K, 4x44K design ID 031554 transfer to 8x60K

Arrays of this design have barcodes that begin with 16065426 or 2565426.


title: Agilent-036401 Yersinia panarray v.1.1

city: University of Helsinki

first: Kaisa

middle: Aulikki

last: Jaakkola

address: Agnes Sjöbergin katu 2

department: The Department of Food Hygiene and Environmental Health

country: Finland

institute: University of Helsinki, Faculty of veterinary medicine

organism:
Yersinia pseudotuberculosis IP 32953
Yersinia pseudotuberculosis IP 31758
Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia pseudotuberculosis YPIII
Yersinia pseudotuberculosis PB1/+
Yersinia enterocolitica W22703
Yersinia enterocolitica subsp. palearctica Y11
Yersinia enterocolitica subsp. palearctica 105.5R(r)

description: Chromosome and plasmid sequences used in microarray design can be found at GPL19993_Array_design.txt


title: Illumina HiSeq 2000 (Escherichia coli B171)

organism: Escherichia coli B171


title: Agilent-049625 Bos taurus_miRNA

status: Public on Jul 22 2015

city: Warsaw

first: Tomasz

last: Sadkowski

address: Nowoursynowska 159

department: Department of Physiological Sciences

country: Poland

institute: Warsaw University of Life Sciences - SGGW

organism: Bos taurus

description:
Arrays of this design have barcodes that begin with 16049625 or 2549625.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Oenococcus oeni PSU-1 Expression Array 4x72k

city: Tarragona

first: Cristina

last: Reguant

state: Tarragona

address: Marcel·lí Domingo 1

department: Biochemistry and Biotechnology

institute: University Rovira i Virgili

organism: Oenococcus oeni PSU-1

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology.


title: Agilent_custom_Human_MCF7_10K

city: Leuven

first: Rekin's

last: Janky

address: Herestraat 49 Box 816

department: Nucleomics Core

country: Belgium

institute: VIB

description: A custom array containing 60-mer oligonucleotides to monitor 5,114 well characterized human transcripts that are chemically responsive in the MCF7 breast cancer cell line.

first: Caroline

last: Vanparys

first: Marleen

last: Maras

first: Koen

last: Van Leemput

first: Karlijn

last: van der Ven

first: Joke

last: Allemeersch

first: Jurgen

last: Del Favero

first: Paul

last: Van Hummelen

first: Ronny

last: Blust

first: Wim

last: De Coen

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2000 (Dictyocaulus viviparus)

last: GEO

organism: Dictyocaulus viviparus


title: Custom Ipomoea batatas  8x60k Gene Expression Microarray (AMADID:044020)

first: Genotypic

last: technology

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

organism: Ipomoea batatas

description: designed  by Genotypic Technology Private Limited


title: NimbleGen T. cacao 28k array [110407_SM_cacao_expr]

status: Public on Mar 07 2014

city: University Park

first: Mark

last: Guiltinan

state: Pennsylvania

address: 422 Life Sciences Bldg.

department: Plant Molecular Biology

institute: Penn State University

organism: Theobroma cacao

description: NimbleGen oligonucleotide glass custom T. cacao gene expression 12X 135,000 (12 plex microarray which can hold 135,000 probes on each of 12 subarrays per slide), containing probes for the 28,798 predicted genes as well as 22,489 probes for genes with a clear 3'UTR prediction. Each sequence had between 1 and 3 probes per sequence, with an average of 2.6 probes per sequence.  Therefore most genes will be represented by over 5 probes on average.

manufacture_protocol: This is a high-density DNA microarray made using Maskless Array Synthesizer (MAS) technology.


title: NimbleGen Candida glabrata CBS138 Expression Array [2009-01-08_RDKK145_Cgla_60mer_expr]

city: Nagasaki

first: Hiroshi

last: Nishikawa

address: 1-7-1 Sakamoto

country: Japan

institute: Nagasaki University Graduate School of Biomedical Sciences

organism: Nakaseomyces glabratus

description: Design ID: 8878; Species: Candida glabrata CBS 138; Data Source:; Database site NCBI; Database name Refseq; Version/Revision; URL; Released date 15-MAY-2008; Type of array: Eukaryotic Expression(4plex); Number of target: 5,217; Length of probes: 60 mer; Number of probes per target: 6 pair; Density: 1 in 2; Replicate: 1; Total number of probes: 62,604; Cutoff value: 1,000; Rocheｿs design ID: RDKK145; Design file name: 2009-01-08_RDKK145_Cgla_60mer_expr_X4; Notice: We set 9,300 random probes to fill empty spots.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Agilent-046161 mouse LncRNA v1 8X60K [Probe Name Version]

status: Public on Sep 23 2015

city: shanghai

first: qian

last: jin

address: libing road

institute: MSP

organism: Mus musculus

description:
Arrays of this design have barcodes that begin with 16046161 or 2546161.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: NimbleGen Mouse ChIP-chip 3x720K RefSeq Promoter Arrays [100718_MM9_Refseq_Prom_ChIP]

status: Public on Jul 01 2013

city: ROCHESTER

first: Haojie

last: Huang

state: MINNESOTA

address: 200 1st ST SW

institute: Mayo Clinic

relation: Alternative to: GPL21030 (ProbeID version)


title: NMC (Norwegian Microarray Consortium) Operon Human MAQC

status: Public on Sep 08 2006

city: Shanghai

first: Leming

last: Shi

address: 2005 Songhu Road

department: School of Life Sciences

institute: Fudan University

manufacture_protocol: NMC protocol


title: Agilent-019118 Human miRNA Microarray V1 G4470A [miRBase release 9.1 miRNA ID version]

status: Public on Jan 09 2015

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description:
catalog number G4470A

miRBase release 9.1


title: [SoyGene-1_0-st] Affymetrix Soybean Gene 1.0 ST Array [transcript (gene) version]

status: Public on Jun 03 2011

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

organism: Glycine max

description:
#%create_date=Mon Jun  6 16:03:37 2011 PDT
#%chip_type=SoyGene-1_0-st-v1
#%lib_set_name=SoyGene-1_0-st
#%lib_set_version=v1
#%genome-version=glyma1tm
#%genome-version-ucsc=glyma1tm
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-version-ucsc=glyma1
#%netaffx-annotation-date=2011-06-21
#%netaffx-annotation-netaffx-build=32


title: Agilent-027511 Leishmania [ORF-centered version]

status: Public on Sep 30 2011

organism: Leishmania

description:
Arrays of this design have barcodes that begin with 16027511 or 2527511.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: UDSC M. tuberculosis H37Rv Validated Array

status: Public on Jun 01 2013

city: Bangalore

first: madavan

last: vasudevan

state: Karnataka

address: Kasturi Nagar

institute: Theomics International Private Limited

organism: Mycobacterium tuberculosis H37Rv

relation: Alternative to: GPL21002 (PROBE ID version)


title: Agilent-027064 SurePrint G3 Rat CGH Microarray 4x180K

status: Public on May 20 2010

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

organism: Rattus norvegicus

description:
SurePrint G3 Rat CGH Microarray 4x180K

Arrays of this design have barcodes that begin with 16027064 or 2527064.

Data table annotations based on genome build UCSC rn4 (Baylor HGSC Build 3.4), November 2004.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/ .


title: Agilent-021924 SurePrint G3 Human CGH Microarray 8x60K (Probe Name version)

status: Public on Apr 23 2013

organism: Homo sapiens

description:
SurePrint G3 Human CGH Microarray 8x60K

Arrays of this design have barcodes that begin with 16021924 or 2521924.

Data table annotations based on build hg18:NCBI36:Mar2006.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Names.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-069978 Arraystar Human CircRNA microarray V1

status: Public on Apr 02 2015

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

description: Genome build: HG19


title: Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Probe Name version)

status: Public on Mar 09 2010

description:
SurePrint G3 Human CGH Microarray 4x180K

Arrays of this design have barcodes that begin with 16022060 or 2522060.

Data table annotations based on build hg18:NCBI36:Mar2006.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL10123.


title: Illumina NextSeq 500 (Sus scrofa)

status: Public on Oct 02 2015

organism: Sus scrofa


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [probe set (exon) version]

status: Public on Aug 20 2013

relation: Alternative to: GPL19198 (Alternative CDF [hta20hsensgcdf_18.0.0.cdf])

relation: Alternative to: GPL20932 (Alternative CDF [hta20hsensgcdf_19.0.0.cdf])

manufacture_protocol: See manufacturers website