title: Illumina Genome Analyzer IIx (Psammomys obesus)

status: Public on Nov 30 2015

last: GEO

country: USA

organism: Psammomys obesus

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 2500 (Cochlodinium polykrikoides)

organism: Margalefidinium polykrikoides


title: Ion Torrent Proton (Tetranychus urticae)

organism: Tetranychus urticae


title: Agilent-050524 Human V2.0 60k array (Feature Number version)

status: Public on Oct 31 2016

city: Gent

first: Wim

last: Trypsteen

state: East-Flanders

address: Corneel Heymanslaan 10

department: Internal Medicine

country: Belgium

institute: UGent

organism: Homo sapiens

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: SurePrint


title: Agilent-032837 Homo sapiens 2q13_Pengfei

city: Houston

first: Bo

last: Yuan

address: One Baylor Plaza

institute: Baylor College of Medicine

description:
Arrays of this design have barcodes that begin with 16032837 or 2532837.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

chromosome 2q13
coordinates from hg19
chromosome 2q15

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2000 (Staphylococcus equorum)

organism: Staphylococcus equorum


title: Ion Torrent Proton (Synthetic plasmid)

organism: Synthetic plasmid


title: Ion Torrent Proton (Tetranychus cinnabarinus)

organism: Tetranychus cinnabarinus


title: Illumina HiScanSQ (Sus scrofa)

organism: Sus scrofa


title: Exiqon miRCURY LNA microRNA array, 7th generation [canine, miRBase v18]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: synthetic construct

technology: spotted oligonucleotide


title: Illumina HiSeq 2000 (Brassica rapa subsp. oleifera)

organism: Brassica rapa subsp. oleifera


title: Illumina HiSeq 2000 (Laccaria bicolor; Populus trichocarpa)

status: Public on Nov 27 2015

organism:
Populus trichocarpa
Laccaria bicolor


title: Agilent-064191 FZ_IBG1_4plex

status: Public on Nov 28 2015

city: Juelich

first: Tino

last: Polen

state: NRW

address: Wilhelm-Johnen-Str 1

department: IBG-1: Biotechnology

country: Germany

institute: Forschungszentrum Jülich GmbH

organism:
Gluconobacter oxydans
Escherichia coli
Corynebacterium glutamicum
Bacillus subtilis subsp. subtilis str. 168

description:
synthesized oligonucleotides
Based on Corynebacterium glutamicum (NC_006958), Bacillus subtilis str. 168 (NC_000964), Gluconobacter oxydans (NC_006677, NC_006672, NC_006673, NC_006674, NC_006675, NC_006676), Escherichia coli (NC_000913)

manufacturer: Agilent Technologies (Waldbronn, Germany)

manufacture_protocol: see Agilent Technologies


title: Applied Biosystems Taqman Array Rodent MicroRNA CardA v2.0

city: Jerusalem

first: Moshe

last: Biton

address: hadassah ein kerem

department: Lautenberg Center for immunology

country: Israel

institute: Hebrew University

organism: Mus musculus

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: NTUH-K2044 microarray

status: Public on Nov 25 2015

city: Taipei

first: Pei-Fang

last: Hsieh

address: 1, Sec 1, Jen-Ai Rd.

department: Department of Microbiology

country: Taiwan

institute: National Taiwan University College of Medicine

organism: Klebsiella pneumoniae

technology: spotted DNA/cDNA

description: spotted single stranded PCR amplicon

distribution: non-commercial

manufacture_protocol: The genomic library was constructed from a clinical isolate, NTUH-K2044, obtained from a patient with PLA plus meningitis and endophthalmitis for a KP genome shotgun sequencing project. NTUH-K2044 array contains 2,848 cloned sequences, which covering 99.9% of the entire genome sequence of NTUH-K2044. DNA fragments of K. pneumoniae in pUC18 were amplified by polymerase chain reaction (PCR) using primers to vector sequences and were spotted onto a nylon membrane (Roche) by a computer-controlled XYZ translation system (PM500; Newport).


title: Agilent-049286 Arabidopsis thaliana 8x60K array [condensed GeneID version]

city: Jena

first: Madhunita

last: Bakshi

address: Dornburger Str. 159

department: Plant physiology

institute: Friedrich-Schiller Universität Jena

organism: Arabidopsis thaliana

description:
**Ath_8x60K_exp_validated_OakLabs_05-2013 048923**

Arabidopsis thaliana, experimentally validated for No-0 and Col-0 by OakLabs May 2013.

Arrays of this design have barcodes that begin with 16049286 or 2549286.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the TargetID

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Pseudomonas aeruginosa AES-1R)

status: Public on Nov 24 2015

organism: Pseudomonas aeruginosa AES-1R


title: Agilent-049739 Enterococcus faecalis v1

status: Public on Nov 26 2015

city: Madrid

first: Alicia

last: Bravo

address: Calle Ramiro de Maeztu, 9

department: Centro de Investigaciones Biologicas

country: Spain

institute: CSIC

organism: Enterococcus faecalis OG1RF

description:
Based on Enterococcus faecalis OG1RF complete genome, NCBI Reference Sequence: NC_017316.1
Genome ACCESSION: NC_017316 NZ_ABPI01000000 NZ_ABPI01000001
GoIDs obtained from blast2go software, NCBI nr database 10-2013
Arrays of this design have barcodes that begin with 16049739 or 2549739.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina Golden Gate BeadArray

status: Public on Nov 21 2015

city: Rockville

first: Mervi

last: Heiskanen

address: 9609 Medical Center Drive, 1W378

department: CBIIT

institute: NCI

technology: oligonucleotide beads

manufacture_protocol: See manufacturer's website


title: Illumina HiSeq 1000 (Solanum lycopersicum)

status: Public on Nov 20 2015

organism: Solanum lycopersicum


title: Illumina HiSeq 2500 ([Haemophilus] ducreyi)

organism: [Haemophilus] ducreyi


title: Illumina HiSeq 2000 (Naumovozyma castellii)

organism: Naumovozyma castellii


title: Illumina Genome Analyzer IIx (Naumovozyma castellii)


title: Illumina Genome Analyzer II (Sphingomonas wittichii)

status: Public on Nov 19 2015

organism: Rhizorhabdus wittichii


title: Agilent-065204 17p13.3_8x60K  G4126A [Probe Name Version]

first: Shen

last: Gu

state: TX

address: 1 Baylor Plaza

department: Molecular and Human Genetics

organism: Homo sapiens

description: Arrays of this design have barcodes that begin with 16065204 or 2565204

distribution: commercial


title: CAT-30K-C_jejuni_NCTC_11168_platform

city: Ljubljana

first: Jasna

last: Kovac

address: Jamnikarjeva 101

department: Department of Food Science and Technology

country: Slovenia

institute: University of Ljubljana, Biotechnical Faculty

organism: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

description: Microarray with 4751 probes targeting 1756 genes specific for Campylobacter jejuni subsp. jejuni NCTC 11168 (Mycroarray, Biodiscovery-LLC, MI, USA).

manufacture_protocol: see manufacturer's web site http://www.mycroarray.com/


title: Illumina Genome Analyzer II (Capsella rubella)

status: Public on Nov 17 2015

organism: Capsella rubella


title: Illumina NextSeq 500 (Mycoplasma gallisepticum)

organism: Mycoplasmoides gallisepticum


title: Illumina HiSeq 2500 (Mycoplasma gallisepticum)


title: Corynebacterium glutamicum CGR_Oligo_array

status: Public on Nov 18 2015

city: Kyoto

first: Masayuki

last: Inui

address: 9-2 Kizugawadai, Kizugawa

country: Japan

institute: Research institute of Innovative Technology for the Earth (RITE)

organism: Corynebacterium glutamicum

manufacture_protocol:
1. Design 60-mer oligonucleotides specific to coding sequences using TaKaRa-Bio design program, which designs oligonucleotides based on information including sequence specificity, palindrome structure, Tm, and length.
2. Spot oligonucleotides synthesized based on the design using the NGK INSULATOR spotter onto TaKaRa microarray silide.
3. After the print run is completed, process the fixation protocol of the glass.


title: Illumina HiSeq 2500 (Brassica oleracea)

organism: Brassica oleracea


title: Agilent-041998 Mytilus galloprovincialis [Feature Number version]

city: A Coruña

first: Juan

last: Fernandez Tajes

address: As Xubias

department: Genomics Area

institute: INIBIC

organism: Mytilus galloprovincialis

description:
Almeja v1 041808

Arrays of this design have barcodes that begin with 16041998 or 2541998.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Ion Torrent Proton (Bos taurus)

status: Public on Nov 16 2015

organism: Bos taurus


title: Illumina NextSeq 500 (Eutrema salsugineum)

organism: Eutrema salsugineum


title: HumanOmniExpress-24 v1.0 BeadChip [SNP_ID version]

status: Public on Nov 23 2015

relation: Alternative to: GPL19699 (IlmnID version)


title: Illumina HiSeq 2500 (Aggregatibacter actinomycetemcomitans; Streptococcus mutans)

status: Public on Nov 15 2015

organism:
Aggregatibacter actinomycetemcomitans
Streptococcus mutans


title: Illumina HiSeq 2500 (Streptococcus mutans)

organism: Streptococcus mutans


title: Illumina HiSeq 2500 (Aggregatibacter actinomycetemcomitans)

organism: Aggregatibacter actinomycetemcomitans


title: Agilent-023710 DM15k_01_Of_1

status: Public on Nov 14 2015

city: Antwerp

first: Melissa

last: Penninck

address: Groenenborgerlaan 171

institute: University of Antwerp

organism: Daphnia magna


title: Illumina HiSeq 2500 (Eutrema salsugineum)


title: Illumina HiSeq 2000 (Mus musculus; Rattus norvegicus)

organism:
Mus musculus
Rattus norvegicus


title: Illumina MiSeq (Cricetulus griseus)

organism: Cricetulus griseus


title: Illumina HiSeq 2500 (Brassica rapa)

organism: Brassica rapa


title: 3D-Gene Rat miRNA V17 1.0.0

status: Public on Nov 13 2015

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: Tebiro 6-10-1

department: New Projects Development Division

institute: Toray Industries,Inc.

organism: Rattus norvegicus

manufacture_protocol: See manufacture's web site


title: [DroGene-1_1-st] Drosophila Gene 1.1 ST Array [CDF: drogene10stdmenstcdf_18.0.0]

status: Public on Nov 12 2015

city: Regensburg

first: Julia

middle: C

last: Engelmann

address: Josef-Engert-Str. 9

department: Statistical Bioinformatics

institute: University of Regensburg

organism: Drosophila melanogaster

manufacture_protocol: This platform is identical to GPL17506. For transcript probe set definition a custom CDF package was used.


title: cgf tomato 25k v2

city: Verona

first: Alberto

last: Ferrarini

state: Veneto

address: Strada le Grazie, 15

department: Scientific and Technological Department

country: Italy

institute: University of Verona

organism: Solanum lycopersicum

manufacturer: University of Verona - Scientific and Technological Department - Plant Functional Genomics Centre

manufacture_protocol: Probes are directly synthesized on a 90k Combimatrix array by an in situ oligo synthesis system developed by Combimatrix Corporation (Mukilteo, USA) using the Combimatrix CustomArray synthesizer. Standard synthesis protocol provided by Combimatrix was used.


title: Multiplex Circulating miRNA Assay

city: Charlestown

first: Yan

last: Feng

state: MA

address: 149 13th Street, Rm4423

department: Anesthesia, Critical Care and Pain Medicine

institute: MGH

organism: Mus musculus

description: hydrogel microparticle flow cytometry


title: Illumina HiSeq 2000 (Synechococcus sp. WH 7803)

status: Public on Nov 11 2015

last: GEO

organism: Synechococcus sp. WH 7803


title: Ion Torrent PGM (Xenopus (Silurana) tropicalis)

organism: Xenopus tropicalis


title: Agilent-029456 Kakinuma-1 Mus musculus

city: Chiba

first: Masaaki

last: Sunaoshi

state: Chiba

address: 4-9-1 Anagawa, Inage-ku

department: Department of Radiation Effects Research, Institute for Radiological Science

institute: National Institutes for Quantum Science and Technology


title: Illumina Genome Analyzer IIx (Bacteroides fragilis 638R)

status: Public on Nov 09 2015

organism: Bacteroides fragilis 638R


title: Illumina HiSeq 2000 (Synechococcus sp. WH 8102)

organism: Parasynechococcus marenigrum WH 8102


title: Illumina HiSeq 2000 (Synechococcus sp. WH 8109)

organism: Synechococcus sp. WH 8109


title: Illumina MiSeq (Ruminiclostridium thermocellum)

organism: Acetivibrio thermocellus


title: Illumina HiSeq 2000 (Populus tremuloides)

organism: Populus tremuloides


title: Agilent-079374 Synechocystis2015 075764

city: Freiburg

first: Jens

last: Georg

address: Schänzlestr. 1

institute: University of Freiburg

organism: Synechocystis sp. PCC 6803

description:
Copy of the SynCRISPR76 array, Tm 76, reverse complement probes

Arrays of this design have barcodes that begin with 16079374 or 2579374.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2500 (Solanum lycopersicum var. cerasiforme)

organism: Solanum lycopersicum var. cerasiforme


title: Agilent-053955 Human miRBase 16.0 Human_v19 [Feature Number Version]

status: Public on Nov 10 2015

city: Houston

first: Chad

last: Creighton

address: One Baylor Plaza, Mail Stop: BCM305

department: Biostatistics, Ducan Cancer Center

institute: Baylor College of Medicine

organism: Homo sapiens

description:
Human miRBase 16.0 + Human_v19 probes

Arrays of this design have barcodes that begin with 16053955 or 2553955.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-068300 ArrayXS_Celegans_OakLabs_06-2014_V2 (SystematicName version)

city: Göttingen

first: Judith

last: Besseling

address: Am Faßberg 11

department: Sleep and Waking

institute: Max Planck Institute for Biophysical Chemistry

organism: Caenorhabditis elegans

description:
The provided SEQUENCE is only a subset of at least 30 nucleotides of the sequence in the design (this is a kind of copy protection).

The ID column includes the Agilent SystemincNames. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL19783


title: IlluminaHumanOmni2.5Exome-8 v1.1 A

city: San Diego

last: Illumina Inc.

state: CA

address: 9885 Towne Centre Drive

institute: Illumina Inc.


title: Illumina HiSeq 2000 (Flaveria robusta)

status: Public on Nov 06 2015

organism: Flaveria robusta


title: Mycroarray Escherichia coli K12_substr_MG1655  3x20K Microarrays

status: Public on Nov 05 2015

city: Jeonju

first: Younghoon

last: Kim

address: 567 Baekje-Daero, Deokjin-Gu

department: Department of Animal Science

country: South Korea

institute: Chonbuk National University

organism: Escherichia coli str. K-12 substr. MG1655


title: Illumina HiSeq 2000 (Pseudoalteromonas sp. SM9913)

status: Public on Nov 02 2015

organism: Pseudoalteromonas sp. SM9913


title: [BovGene-1_0-st] Bovine Gene 1.0 ST Array [CDF: Brainarray bovgene10st_Bt_ENTREZG, version 19.0.0]

status: Public on Nov 03 2015

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Bos taurus

description: This identical to GPL16500 but a custom CDF (brainarray; bovgene10stbtentrezgenecdf, version 19.0.0) environmnet was used to extract data.

relation: Alternative to: GPL16500 (Alternative CDF [official])

manufacture_protocol: See manufacturer's web site


title: Agilent-044658 pinarray 3

status: Public on Nov 04 2015

city: Malaga

first: Rafael

middle: A

last: Cañas

address: Facultad de Ciencias, Campus de Teatinos

department: Biología Molecular y Bioquímica

institute: Universidad de Málaga

organism: Pinus pinaster

description:
Arrays of this design have barcodes that begin with 16044658 or 2544658.
Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
This multi-pack (4X44K) formatted microarray is based in the reference transcriptome of Pinus pinaster contained in the SustainPine DataBase covering most of transcriptome. This array covers 42,500 unigenes from P. pinaster.


title: Illumina HiSeq 2000 (Apis mellifera carnica)

organism: Apis mellifera carnica


title: Custom nCounter Gene Expression CodeSets (Catalog No.  GXA-P1CS-048, Nanostring Technologies, Inc., Seattle, WA)

city: Frederick

first: David

last: Salomon

address: 1050 Boyles Drive, Bldg. 560 Room 1246

department: NCI

institute: NIH

organism: Mus musculus

technology: other


title: LMIVV laboratory, Animal Pan-viral DNA array, 3800 probes, V2

city: St-Hyacinthe

first: Christian

last: Bellehumeur

address: 3200 Sicotte

country: Canada

institute: Université de Montréal

organism: Viruses

description: multiple animal viruses DNA or RNA genomic sequences selected from sequences alignment

manufacturer: National Research Council Canada (Montreal)

manufacture_protocol: Lyophilized oligonucleotides were suspended in water to a concentration of 50 pmol/ml. These probe stocks were diluted in dimethyl sulfoxide (50%, v/v) to a final concentration of 25 pmol/ml. Ten ml of each probe was transferred into a 384-well microplate and printed onto Corning GAPS II slides (Corning Co., Corning, N.Y.) with a Virtek ChipWriter, using Telechem SMP3 microspotting pins. Each probe was printed in duplicate. Slides were processed by UV cross-linking (600 mJ) followed by heat treatment (80 C overnight) and stored in the dark at room temperature until use.


title: nCounter Mouse miRNA Expression Assay


title: Agilent-037886 thaps.gsa.exons.bd.org.RNAseq.3p.sense.60k 032798

city: Seattle

first: Justin

last: Ashworth

address: 401 Terry Ave N

institute: Institute for Systems Biology

organism: Thalassiosira pseudonana

description:
Arrays of this design have barcodes that begin with 16037886 or 2537886.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Streptococcus mutans)

organism: Streptococcus mutans


title: [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [Ver. 14.1.0, MoEx10stv1_Mm_ENSG]

status: Public on Nov 01 2015

city: Helsinki

first: Maria

last: Voutilainen

address: Viikinkaari 9

department: Institute of Biotechnology

country: Finland

institute: University of Helsinki

manufacture_protocol: Affymetrix


title: NimbleGen Dickeya dadantii 3937 array [2005-05-31_Ogg_Erwinia_24mer]

city: Rennes

first: carlos

last: blanco

address: 263 avenue Général Leclerc

department: SVE

country: France

institute: université rennes 1

organism: Dickeya dadantii 3937

description:
design name: 2005-05-31_Ogg_Erwinia_24mer
DESIGN_ID: 2181

A 1:2 expression design for 4597 genes from Dickeya dadantii 3937 with 20 24-mer probe pairs (PM/MM) per gene.
Each probe is replicated 2 times.
The design includes random GC and other control probes.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: NanoString nCounter RUO-PAM50 Gene Expression Custom CodeSet

city: Saint Louis

first: Sherri

middle: R

last: Davies

state: MO

address: 4950 Parkview Place

institute: Washington University


title: Agilent-068300 ArrayXS_Celegans_OakLabs_06-2014_V2 (Feature number version)

status: Public on Feb 13 2015

city: Hennigsdorf

first: Martina

last: Schad

address: Neuendorfstrasse 16b

institute: OakLabs GmbH

description:
The provided SEQUENCE is only a subset of at least 30 nucleotides of the sequence in the design (this is a kind of copy protection).

The ID column includes the Agilent Feature Extraction numbers. A different version of this platform with the Agilent SystemincNames in the ID column is assigned accession number GPL21109.


title: NimbleGen Pine 36K array v1.0 [110224_Pinus_FA_exp]

status: Public on Apr 01 2015

first: Tommaso

last: Raffaello

address: Latokartanonkaari 7 PO Box 27

department: Forest Sciences

organism: Pinus sylvestris

description:
NimbleGen Pine 36K array v1.0.ndf
NimbleGen Pine 36K array v1.0.ngd

designname=110224_Pinus_FA_exp
designid=549411

manufacture_protocol: Propriety in situ oligonucleotide synthesis


title: NimbleGen Gallus gallus gene expression array [090126_Ggal_ML_exp]

status: Public on Oct 31 2015

city: Boston

last: Loscertales

state: Ma

address: 185 Cambridge St

department: Pediatric Surgery

institute: Massachusetts General Hospital

organism: Gallus gallus


title: Illumina mouseref-8_v2_0_r3 expression beadchip

city: Cleveland

first: Yibayiri

middle: Osee

last: Sanogo

state: OH

address: 9500 S Euclid Ave

department: Genomics Core

institute: Cleveland Clinic Foundation


title: Illumina NextSeq 500 (Trypanosoma brucei)

status: Public on Jun 16 2015

last: GEO

organism: Trypanosoma brucei


title: NimbleGen custom Mouse Top2β target gene tiling array (HD 2.1)

status: Public on May 02 2012

city: Basel

first: Dirk

last: Schuebeler

address: Fabrikstrasse 24

country: Switzerland

institute: Friedrich Miescher Institute for Biomedical Research

description: Genomic regions of potential Top2β target genes from mm9, isothermal tiling oligos at 100bp


title: University of Sydney CombiMatrix 12K PANarray

status: Public on Jun 02 2011

city: Sydney

first: Jim

last: Manos

state: NSW

address: Camperdown

country: Australia

institute: University of Sydney

organism:
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa 2192
Pseudomonas aeruginosa C3719
Pseudomonas paraeruginosa PA7
Pseudomonas aeruginosa PACS2
Pseudomonas aeruginosa LESB58
Pseudomonas aeruginosa AES-1R

description: Contains genes from eight Pseudomonas aeruginosa strain genomes: AES-1, PAO1, UCBPP-PA14, PA7, c3719, PA2192, PACS2 and LESB58 (Liverpool Epidemic Strain).

manufacturer: Now manufactured by CustomArray Inc, WA, USA


title: Illumina HiSeq 2000 (Streptococcus pyogenes)

status: Public on Jun 11 2014

organism: Streptococcus pyogenes


title: TIGR PFGRC Aspergillus fumigatus 22K v3 array (designed primarily based on strain Af293)

status: Public on Mar 26 2009

city: Ribeirao Preto

first: Gustavo

middle: Henrique

last: Goldman

state: Sao Paulo

address: Avenida do Café, s/n

department: Departament of Pharmaceutical Sciences

country: Brazil

institute: Faculty of Pharmaceutical Sciences of Ribeirao Preto

organism: Aspergillus fumigatus

description:
This set includes 9674 oligonucleotides, has 22176 spots distributed in 48 blocks.
The condensed array layout file (ie, 1x representation of oligos) is linked below as a supplementary file.

*** A different version of this platform with the Oligo ID in the ID column is assigned accession number GPL21100.

manufacturer: TIGR PFGRC (The Pathogen Functional Genomics Resource Center)

first: Frederico

middle: M

last: Soriani

first: Iran

last: Malavazi

middle: H

manufacture_protocol: 2QAF, with arrayer GENETIX, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000


title: [SYN-PHGa520786F] Affymetrix Synechococcus Custom GeneChip

status: Public on Aug 30 2015

first: Miguel

last: Hernández-Prieto

address: Macleay Building A12

department: School of life and environmental sciences

organism:
Synechococcus sp. WH 7803
Parasynechococcus marenigrum WH 8102
Synechococcus sp. WH 8109
Synechococcus phage syn9
Cyanophage P-TIM40

manufacture_protocol: see Affymetrix website


title: HumanOmniExpress-24 v1.0 BeadChip

status: Public on Jan 23 2015

last: Illumina Inc.

address: 9885 Towne Centre Drive

organism: Homo sapiens

relation: Alternative to: GPL21168 (SNP_ID version)


title: Lewis-Sigler Institute Homo sapiens 44.5K [HOAN]

city: Stanford

first: Fiona

last: Strouts

address: Campus Drive

institute: Stanford

description: blockType=3 xLeft=2000 yTop=5800

manufacturer: Lewis-Sigler Institute Microarray Facility


title: Agilent-021113 Tobacco Gene Expression Microarray (Feature Number version)

status: Public on Feb 24 2010

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

organism: Nicotiana tabacum

description:
Arrays of this design have barcodes that begin with 16021113 or 2521113.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL21158 (GeneName version)

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Phalanx Human OneArray Ver. 6 Release 1

status: Public on Apr 10 2013

city: Hsinchu

first: Sean

last: Chang

address: 6F, NO.6 Technology Road 5

department: R&D

institute: PhalanxBiotech Group

manufacture_protocol: See http://www.phalanxbiotech.com/ for updated protocols


title: Agilent-023647 B. taurus (Bovine) Oligo Microarray v2 (Probe Name version)

status: Public on Jan 24 2011

organism: Bos taurus

description: *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL11648.


title: Agilent-023710 Daphnia magna 8x15k oligonucleotide array [Probe Name version]

status: Public on Feb 01 2013

city: Doha

first: Tanwir

last: Habib

address: Al Luqta Street

country: Qatar

institute: Weill Cornell Medicine Qatar

organism: Daphnia magna

manufacture_protocol: see manufacturer's website for details: https://earray.chem.agilent.com/earray/


title: Illumina NextSeq 500 (Escherichia coli str. K-12 substr. MG1655)

status: Public on Nov 09 2015

country: USA


title: Illumina HiSeq 2000 (Neurospora crassa)

status: Public on Oct 10 2012

organism: Neurospora crassa


title: [BovGene-1_0-st] Bovine Gene 1.0 ST Array [transcript (gene) version]

status: Public on Jan 11 2013

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Jan 11, 2013: annotation table updated with netaffx build 33

relation: Alternative to: GPL21098 (Alternative CDF [bovgene10st_Bt_ENTREZG, 19.0.0])

relation: Alternative to: GPL21176 (Alternative CDF [bovgene10st_Bt_ENTREZG, 16.0.0])