title: Solanum melongena array v1.0

status: Public on Jan 25 2017

city: Verona

first: Alberto

last: Ferrarini

state: Veneto

address: Strada le Grazie, 15

department: Scientific and Technological Department

country: Italy

institute: University of Verona

organism: Solanum virginianum

technology: in situ oligonucleotide

distribution: custom-commercial

manufacturer: University of Verona - Scientific and Technological Department – Functional Genomics Centre

manufacture_protocol: Probes are directly synthesized on a 4 x 2k Combimatrix array by an in situ oligo synthesis system developed by Combimatrix Corporation (Mukilteo, USA) using the Combimatrix CustomArray synthesizer. Standard synthesis protocol provided by Combimatrix was used.


title: Exiqon miRCURY LNA microRNA array, 7th generation [miRBase v16, condensed Probe_ID version]

status: Public on Jun 26 2016

city: Hangzhou

first: Kunkai

last: Su

address: 79 Qingchun Road

country: China

institute: Zhejiang University

organism: Mus musculus

technology: spotted oligonucleotide


title: Agilent-045370 C. perfringens strain NCTC8239 8*15K array [Probe Name Version]

status: Public on Mar 13 2016

city: Suita

first: Daisuke

last: Okuzaki

state: Osaka

address: Yamadaoka 3-1

department: Immunology Frontier Research Center

country: Japan

institute: Osaka univ.

organism: Clostridium perfringens NCTC 8239

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Agilent-023364 Custom Whole Human Genome CGH Microarray 2x415K [Probe Name version]

status: Public on Feb 12 2016

city: Seattle

first: Ilsa

last: Coleman

state: WA

address: 1100 Fairview Ave N, E2-112

department: Human Biology

country: USA

institute: Fred Hutchinson Cancer Center

organism: Homo sapiens

description: Custom 2 x 415K array

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: NIM_SA_TIMECOURSE_DESIGN_NOV_2009_ST398

status: Public on Dec 31 2015

city: Amsterdam

first: Martijs

last: Jonker

address: Science Park 904

department: Microarray Department

country: Netherlands

institute: University of Amsterdam

organism: Staphylococcus aureus

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Exiqon miRCURY LNA microRNA array; 7th generation REV - hsa, mmu & rno; batch 208520-22; lot 35102-35102 (miRBase 19.0)

city: Lianyungang

first: Leilei

last: Wang

state: Jiangsu

address: No.10 Cangwu road

institute: Lianyungang maternal and child health hospital

organism:
Homo sapiens
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Cytomegalovirus
Lymphocryptovirus
Rhadinovirus
JC polyomavirus
Human immunodeficiency virus 1
Merkel cell polyomavirus
Betapolyomavirus hominis
Betapolyomavirus macacae

description:
ProductDate=March 2012
ProductNumber=208520,208521,208522
LotNumberRange=35102-35102

ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 19.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:94.16%

manufacture_protocol: See manufacturer's website: http://www.exiqon.com


title: Agilent-038498 H. sapiens 4x180k expression


title: SA Biosciences Homo sapiens miRNome miRNA PCR Array v16

city: Cairo

first: Mai

last: Tolba

state: Non-US/Non-Canadian

address: Abbasya

department: Pharmacology and Toxicology

country: Egypt

institute: Faculty of Pharmacy, Ain Shams University

technology: RT-PCR

description: PCR assay

distribution: virtual

manufacture_protocol: see manufacturer's website


title: TaqMan Array Human Immune Panel

city: Birmingham

first: S

middle: Louis

last: Bridges

state: Al

address: University Blvd

department: Rheumatology

institute: UAB

manufacture_protocol: See manufacturer's website.


title: Agilent-031140, Aspergillus nidulans custom array [Probe Name Version]

city: Debrecen

first: Tamas

last: Emri

address: Egyetem ter 1

country: Hungary

institute: University of Debrecen

organism: Aspergillus nidulans

description: custom array


title: DNA microarray for STD pathogen detection

city: Tianjin

first: Boyang

last: Cao

address: #23 HongDa Street

institute: Nankai Univ

organism:
Neisseria gonorrhoeae
Chlamydia trachomatis
Mycoplasmoides genitalium
Metamycoplasma hominis
Ureaplasma
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Human papillomavirus

technology: spotted DNA/cDNA

distribution: non-commercial

manufacture_protocol: The probes were dissolved in 50% dimethyl sulfoxide (DMSO) to a final concentration of 1 µg/µL and coated onto aldehyde group-modified glass slides (CapitalBio Corporation, Beijing, China) using SpotArray 72 (Perkin-Elmer Corporation, CA, USA). Each probe was spotted in triplicate. Coated slides were dried and stored at room temperature in the dark. Each glass slide contained eight individual arrays framed with an 8-sample cover slip containing individual reaction chambers.


title: Agilent-038498 H. sapiens 4x180k expression [gene version]


title: SABiosciences Innate and Adaptive Immune Responses PCR Array

description: PCR assay


title: Agilent-017138 Mouse Array

city: Seoul

first: Dong-Mi

last: Shin

address: 1 gwanak-ro

country: South Korea

institute: seoul national university


title: OSU-CCC Human and Mouse MicroRNA Microarray Version 4.0 [GenePix Layout]

city: Columbus

first: Francesca

last: Lovat

address: 460 W 12th ave

institute: The Ohio State University

organism:
Homo sapiens
Mus musculus

description: Below table corresponds to GenePix Scanner.

manufacturer: Microarray Shared Resource, Comprehensive Cancer Center, The Ohio State University (OSU-CCC)

manufacture_protocol: Manufacured using GE Healthcare's CodeLink (TM) 3-D Gel Matrix Technology. CodeLink(tm) Activated Slides are designed to covalently immoblize amine-modified DNA for microarrays. The slides are coated with a 3-D surface chemistry comprised of a long-chain, hydrophilic polymer containing amine-reactive groups. This polymer is covalently crosslinked to itself and to the surface of the slide. The crosslinked polymer, combined with end-point attachment, orients the immobilized DNA, and holds it away from the surface of the slide. The 1x printing buffer consists of 50 mM sodium phosphate at pH 8.5. Codelink slides are manufactured by SurModics and were formally sold as 3D-Link(tm) Activated Slides.   Microarrays are printed with an Omnigrid robotic arrayer by Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead and 16 SMP3 print tips from Telechem (http://www.arrayit.com). The microRNA microarray probe set is based on 40mer oligonucleotides from Sigma-Genosys.   Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in print buffer (150mM sodium phosphate, pH 8.5, 4% sodium sulfate, 0.0001% N-lauryl sarcosyl) to a normalized 25 micromolar concentration. The miRNA microarray spot densities are 200 microns (center-to-center). The microarrays are printed on Codelink Activated Slide (PN300011)) and treated by a method that is an adaptation of the manufacturer's instructions to allow higher throughput processing.


title: LC_MRA-1003_miRRat_19

city: Houston

first: Christoph

last: Eicken

state: TX

address: 2575 W. Bellfort

institute: LC Sciences, LLC

organism: Rattus norvegicus

distribution: commercial

manufacture_protocol: Rat miRNA microarray with 100% coverage of mature  miRNAs listed in miRBase version 19. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.


title: miRCURY LNA microRNA Array - 7th generation - hsa, mmu & rno [miRBase 19.0]

city: Madrid

first: Tereza

last: Vaclova

address: C/ Melchor Fernández Almagro, 3

department: Human Cancer Genetics

country: Spain

institute: CNIO - Spanish National Cancer Research Centre

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

description: miRCURY LNA microRNA Array - 7th generation -product 208502 - human, mouse & rat


title: LC_1001B2_miRHuman_19

manufacture_protocol: Human miRNA microarray with 100% coverage of human mature  miRNAs listed in miRBase version 19. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.


title: Nanostring IBD Codeset

status: Public on Aug 10 2016

city: Boston

first: Ramnik

middle: J

last: Xavier

state: MA

address: 185 Cambridge Street

institute: Massachusetts General Hospital

technology: other


title: Agilent-027365 Splicing sensitive S. pombe microarray

city: Ithaca

first: Jeffrey

middle: A

last: Pleiss

state: NY

address: 451 Biotech

department: Molecular Biology and Genetics

institute: Cornell University

organism: Schizosaccharomyces pombe


title: Illumina HiSeq 2000 (Proteus mirabilis)

status: Public on Dec 24 2015

last: GEO

organism: Proteus mirabilis

technology: high-throughput sequencing


title: Illumina HiSeq 2000 (Sulfolobus solfataricus)

status: Public on Dec 30 2015

organism: Saccharolobus solfataricus


title: miRFishes_20_LCB_131125-F

city: Guangzhou

first: zhang

middle: xiu

last: juan

state: Guangdong province

address: NO.105, Xingang west road, Haizhu district

institute: Guangdong Entomological institute

organism: Acipenser sturio

manufacture_protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.


title: Agilent-016333 Saccharomyces cerevisiae 8x15k Expression Array AMADID: 016333 (GeneName version)

city: Bangalore

first: Malathi

last: Srinivasan

state: Karnataka

address: Allalasandra, GKVK Post, Bellary Road

department: Lipidomic Center

country: India

institute: Central Food Technological Research Institute

organism: Saccharomyces cerevisiae

relation:
Alternative to: GPL14009
Alternative to: GPL15198


title: NimbleGen Human CGH 3x720K Whole-Genome Tiling v3.0 Array [100718_HG18_WG_CGH_v3.1_HX3_HX3]

city: shihezi

first: chunxia

last: liu

address: 2nd North Road

department: Pathology

institute: Shihezi University School of Medicine

description:
Format:3x720K
Source: UCSC
Build: Hg18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 2509bp

manufacture_protocol: See www.nimblegen.com


title: NIZO food research Lactococcus lactis SK11 60-mer array

city: Ede

first: Annereinou

last: Dijkstra

address: Kernhemseweg 2

institute: NIZO food research

organism: Lactococcus lactis


title: Agilent-043262 ch5array 031671 [Feature Number Version]

city: Durham

first: Thomas

middle: D

last: Petes

state: NC

address: 213 Research Drive

department: Molecular Genetics and Microbiology

institute: Duke University School of Medicine

description:
Arrays of this design have barcodes that begin with 16043262 or 2543262.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-026377 Candida albicans 8x15K (AMADID: 026377) designed by Genotypic Technology Private Limited.

status: Public on Dec 29 2015

first: Genotypic

last: technology

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

organism: Candida albicans


title: NIZO food research Lactococcus lactis IL1403 60-mer array


title: NIZO food research Lactococcus lactis KF147 60-mer array


title: Agilent-046066 Unrestricted Rat miRNA V19.0

city: Palo Alto

last: Agilent Technologies

state: CA

institute: Agilent Technologies

description:
Rat miRBase v19.0

Arrays of this design have barcodes that begin with 16046066 or 2546066.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina MiSeq (Caenorhabditis briggsae)

status: Public on Dec 23 2015

organism: Caenorhabditis briggsae


title: Illumina MiSeq (Caenorhabditis nigoni)

organism: Caenorhabditis nigoni


title: Biomark single-cell real-time qRT-PCR lymphoid development assay panel

city: New York

first: Herman

last: Gudjonson

address: 417 E 68th St

department: Computational and Systems Biology Program, SKI

institute: Memorial Sloan Kettering Cancer Center

organism: Mus musculus

description: lymphoid development PCR assay panel


title: Illumina HiSeq 2500 (Nasonia vitripennis)

status: Public on Dec 22 2015

organism: Nasonia vitripennis


title: Illumina HiSeq 2500 (Vitis quinquangularis)

organism: Vitis quinquangularis


title: Illumina HiSeq 2000 (Drosophila mauritiana)

organism: Drosophila mauritiana


title: UTS human microRNA array (miRBase release 7.1)

city: Sydney

first: Nham

last: Tran

state: NSW

address: Jones

department: CHT/FEIT

country: Australia

institute: UTS

organism: Homo sapiens

manufacture_protocol: The LNA oligos were purchased from Exiqon. The oligos were deposited onto GAPS II slides (Amersham, USA) at a concentration of 10 µM (Australian Genome Research Facility, Australia). Individual miRNA LNA probes were printed four times on each array.


title: 3D-Gene Rat miRNA V20_1.0.0

status: Public on Dec 19 2015

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: Tebiro 6-10-1

department: New Projects Development Division

institute: Toray Industries,Inc.

manufacture_protocol: See manufacture's web site


title: UE/ICAAM_LMS Mesorhizobium loti 40K v1.0. [condensed gene-version]

status: Public on Dec 21 2015

city: Evora

first: Marta

last: Laranjo

address: Apartado 94

department: ICAAM

country: Portugal

institute: Universidade de Evora

organism: Mesorhizobium japonicum MAFF 303099


title: Applied Biosystems TaqMan Gene Expression Assays (human)

first: Concepción

last: Núñez

address: C/Profesor Martín Lagos

department: Inmunología Clínica

institute: Instituto de Investigación Sanitaria Hospital Clínico San Carlos

description: Custom TaqMan Array Cards (format 384-well microfluidic card, Applied Biosystems, Foster City, CA, USA)


title: Agilent-061864 EiNuc1 Eretmochelys imbricata

city: Davis

first: Lisa

last: Komoroske

address: One Shields Ave

department: Wildlife, fish and conservation biology

institute: University of California, Davis

organism: Eretmochelys imbricata

description:
Arrays of this design have barcodes that begin with 16061864 or 2561864.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-031100 Mercenaria-1

status: Public on Dec 20 2015

city: Stony Brook

first: Kailai

last: Wang

address: Stony Brook University

institute: Stony Brook University

organism: Mercenaria mercenaria

description:
First Merceneria oligoarray

Arrays of this design have barcodes that begin with 16031100 or 2531100.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-050244 Genotypic Custom Pig 8X60K GE MicroArray 040961

status: Public on Dec 16 2015

city: Basel

first: Tobias

last: Heckel

address: Grenzacherstr. 124

department: pRED

country: Switzerland

institute: Roche

organism: Sus scrofa

description:
ROCHE Mini Pig Transcripts
Arrays of this design have barcodes that begin with 16050244 or 2550244.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: TaqMan Low Density Arrays Card A and B v2

city: Oslo

first: Ann Rita

last: Halvorsen

address: Montebello

country: Norway

institute: OUS- The Norwegian Radium Hospital

description: PCR assay


title: Illumina HiSeq 2000 (Hymenochirus boettgeri)

last: GEO

organism: Hymenochirus boettgeri


title: Illumina HiSeq 2500 (Drosophila melanogaster; Homo sapiens)

status: Public on Dec 15 2015

organism:
Drosophila melanogaster
Homo sapiens


title: Oligo GEArray® Human Tumor Metastasis Microarray (OHS-028)

city: shanghai

first: xin

last: ge

address: xietu road

institute: xybiotech

manufacture_protocol:
http://saweb2.sabiosciences.com/gene_array_product/HTML/OHS-028.html
The Oligo GEArray® microarray contains from 128 oligonucleotide probes representing genes associated with a specific biological pathway.


title: Agilent-060228 Human LncRNA microarray (Probe Name version)

city: Shanghai

first: Huan

last: Shi

address: No.639, ZhiZaoJu Road

department: Oral and maxillafacial surgery

institute: Shanghai JiaoTong University school of medicine, affiliated 9th people's hospital


title: NimbleGen 12-plex Gene Expression Array for Sus Scrofa Ellegaard (minipig) (135 k)

description:
NimbleGen design name: 120229_MiniPig_TH_expr_HX12. Each microarray measures the expression level of 24,499 probe sets covering 17,261 genes with five 60-mer probes (PM) per probe set. The number of replicates is 1 - i.e., only one set of probes on the array. The design includes 16,642 random GC probes for the estimation of the signal threshold and 1536 ERCC control probes.
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.
120229_MiniPig_TH_expr_HX12.ndf
120229_MiniPig_TH_expr_HX12.ngd

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Illumina HiSeq 2500 (Oryctolagus cuniculus)

status: Public on Dec 17 2015

organism: Oryctolagus cuniculus


title: Agilent-045598 E_coli_O127_NC_011601_2_3

city: Shenzhen

first: zhong

last: chen

address: No 89, Taoyuan Road, Nanshan district, Shenzhen 518052, China.

institute: the Affiliated Shenzhen Nanshan Hospital, Guangdong Medical College

organism: Escherichia coli

description:
Arrays of this design have barcodes that begin with 16045598 or 2545598.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NimbleGen Acacia koa 4x72K array v1.0

status: Public on Dec 14 2015

city: Honolulu

first: Kazue

last: Ishihara

state: HI

address: 1955 East-West Rd AgSci 218

department: Molecular Biosciences and Bioengineering

institute: University of Hawaii at Manoa

organism: Acacia koa

description:
Six 60-bp probes (three replicates/probe) were designed per sequence.
120423_Akoa_expr.ndf
120423_Akoa_expr.ngd


title: AB 5500xl Genetic Analyzer (Vigna subterranea)

organism: Vigna subterranea


title: AB SOLiD 4 System (Vigna subterranea)


title: [Axiom_Exome319] Affymetrix Axiom® Exome Genotyping Array

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

description: Data table: Axiom_Exome319.na35.annot.csv

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2000 (Phrynocephalus vlangalii)

organism: Phrynocephalus vlangalii


title: Illumina HiSeq 2500 (Lasiodiplodia theobromae)

organism: Lasiodiplodia theobromae


title: Illumina NextSeq 500 (Bacillus subtilis subsp. subtilis str. JH642)

status: Public on Dec 12 2015


title: Agilent-040422 Tq_CGH_I

status: Public on Dec 11 2015

first: Richard

middle: H

last: Baker

address: 79th at Central Park West

department: Sackler Institute for Comparative Genomics

institute: American Museum of Natural History

organism: Teleopsis quinqueguttata

description:
Arrays of this design have barcodes that begin with 16040422 or 2540422.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent probe name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: BovineHD BeadChip

city: San Diego

last: Illumina Inc.

address: 9885 Towne Centre Drive

institute: Illumina Inc.

organism: Bos taurus

technology: oligonucleotide beads

description: 777,000 SNPs

manufacture_protocol: See manufacturer's website


title: Agilent-040423 Sb_CGH_I

organism: Sphyracephala beccarii

description:
Arrays of this design have barcodes that begin with 16040423 or 2540423.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent probe name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2000 (Paralichthys olivaceus)

status: Public on Dec 10 2015

organism: Paralichthys olivaceus


title: Illumina HiSeq 2000 (Mus musculus; Rattus rattus)

status: Public on Dec 08 2015

organism:
Mus musculus
Rattus rattus


title: NimbleGen Mus musculus array [080925_mm8_60mer_expr]

city: Novato

first: James

last: Flynn

address: 8001 Redwood Blvd.

institute: Buck Institute for Research on Aging

organism: Mus musculus

description: NimbleGen description file(s) linked below:

manufacture_protocol: See manufacturer's website (www.nimblegen.com).


title: Illumina HiSeq 2000 (Artibeus jamaicensis)

status: Public on Dec 07 2015

organism: Artibeus jamaicensis


title: Illumina NextSeq 500 (Mnemiopsis leidyi)

status: Public on Dec 09 2015

organism: Mnemiopsis leidyi


title: Illumina HiSeq 2500 (Caenorhabditis nigoni)

organism: Caenorhabditis nigoni


title: Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium)


title: Illumina HiSeq 2500 (Caenorhabditis briggsae)

organism: Caenorhabditis briggsae


title: Illumina MiSeq (Francisella tularensis subsp. novicida)

status: Public on Dec 04 2015

organism: Francisella tularensis subsp. novicida


title: Illumina MiSeq (Bacillus halodurans)

organism: Halalkalibacterium halodurans


title: AB 5500xl Genetic Analyzer (Gallus gallus)

organism: Gallus gallus


title: [hGlue_3_0] Custom Affymetrix Human Transcriptome Array

city: Beijing

first: Shuhong

last: Li

address: No.8 GongTiNanLu

institute: Beijing Chao-Yang Hospital

organism: Homo sapiens

manufacture_protocol: See manufacturer's web site


title: Ion Torrent PGM (Acinetobacter baumannii AB5075)

organism: Acinetobacter baumannii AB5075


title: Illumina HiSeq 2000 (Ephydatia fluviatilis)

status: Public on Dec 03 2015

organism: Ephydatia fluviatilis


title: Exiqon miRCURY LNA microRNA array, 4th generation - hsa, mmu & rno [product number 208200]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

description: Array product number 208200, Array version 4th Gen, Array batch number 31028.

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 2000 (Homo sapiens; Human herpesvirus 4)

organism:
Homo sapiens
human gammaherpesvirus 4


title: Illumina MiSeq (Streptococcus thermophilus)

organism: Streptococcus thermophilus


title: TUGRAZ-HSA_MMU_RNO-MRC23

city: Vienna

first: Gerald

last: Klanert

address: Muthgasse 18

department: Department of Biotechnology

country: Austria

institute: University of Natural Resources and Biotechnology

manufacturer: Spotted LNA oligonucleotide microRNA array. RNA Biology Group, Institute for Genomics and Bioinformatics, Graz University of Technology, 8010 Graz, Austria

manufacture_protocol: Epoxy-coated Nexterion glass slides were spotted using the miRBase version 16.0 locked nucleic acid (LNA) probe set consisting of 2367 probes against human, mouse and rat miRNAs in 8 replicates.


title: Exiqon miRCURY LNA microRNA array, 7th generation - hsa, mmu & rno [miRBase v18, product number, 208500]

description: Array product number 208500, Array version 7th Gen, Array batch number 35001, miRBase version 18


title: Agilent-048466 Salmonella Typhimurium 14028S (Se14028s) 8x60 array

city: Madison

first: Kimberly

last: Cowles

state: WI

address: 1630 Linden Drive

institute: University of Wisconsin-Madison

organism: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

description:
2 probes per (most) gene; chromosome, plasmid, and some sRNAs

Arrays of this design have barcodes that begin with 16048466 or 2548466.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2000 (Propionibacterium freudenreichii)

status: Public on Dec 01 2015

organism: Propionibacterium freudenreichii


title: Agilent G2534A oligonucleotide-microarray (AMADID:026869) (Probe Name version)

city: Paris

first: Sadri

last: ZNAIDI

address: 25 rue du Docteur Roux

department: Mycology Department

country: France

institute: Institut Pasteur

organism: Candida albicans

manufacture_protocol: Agilent G2534A oligonucleotide-microarray (AMADID:026869) containing 15744 Candida albicans probes, corresponding to 6105 genes.


title: Illumina HiSeq 2500 (Tachysurus vachellii)

status: Public on Dec 02 2015

organism: Tachysurus vachellii


title: LightCycler ® 480 Instrument II - Roche Life Science

city: Frankfurt am Main

first: Klaus

last: Scholich

state: Hessen

address: Theodor Stern Kai 7

department: Clinical Pharmacology

country: Germany

institute: Hospital of Goethe University

manufacture_protocol: see manufacturer's website


title: [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [AltAnalyze 2.0.7 Galaxy1-_HuEx-1_0-st-v2.probe.tab]

city: Bristol

last: Uney

address: Medical School, University Walk

department: School of Clinical Sciences

country: United Kingdom

institute: University of Bristol

description: AltAnalyze version 2.0.7 Galaxy1-_HuEx-1_0-st-v2.probe.tab_.tabular


title: Illumina HiSeq 2500 (Drosophila melanogaster; Mus musculus)

organism:
Drosophila melanogaster
Mus musculus


title: Agilent-059601

city: Rutherford

first: Jane

last: Houldsworth

state: NJ

address: 201 Route 17 North

institute: Cancer Genetics, Inc.

description:
Arrays of this design have barcodes that begin with 16059601 or 2559601.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-038776 P_veroni_YdBTEX

city: Lausanne

first: Silvia

middle: K.

last: Moreno-Forero

state: Vaud

address: Batiment Biophore, Unil Sorge

department: Department of Fundamental Microbiology

institute: University of Lausanne

organism: Pseudomonas veronii 1YdBTEX2

description:
Arrays of this design have barcodes that begin with 16038776 or 2538776.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

middle: K

first: Jan

middle: R

last: van der Meer


title: Illumina HiSeq 2500 (Coccinella septempunctata)

last: GEO

organism: Coccinella septempunctata


title: Illumina MiSeq (Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)

status: Public on Apr 17 2015

organism:
Homo sapiens
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344


title: Illumina HiSeq 2500 (Heterocephalus glaber)

organism: Heterocephalus glaber


title: [HG-U219_Hs_ENTREZG_18] Affymetrix Human Genome U219 Array [CDF: Brainarray HGU219_Hs_ENTREZG_v18]

status: Public on Jul 02 2015

description: This identical to GPL13667 but a custom cdf environment was used to extract data.

relation: Alternative to: GPL13667 (Alternative CDF [official])


title: Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)

status: Public on Apr 16 2015


title: [miRNA-3_0] Affymetrix Multispecies miRNA-3 Array [Hs_MIRBASEG]

city: MILAN

first: Luca

last: Agnelli

address: Venezian 1

department: Department of Advanced Diagnostics

country: Italy

institute: IRCCS Istituto Nazionale dei Tumori

organism: synthetic construct

manufacture_protocol: see Affymetrix


title: Agilent-066899 G4126A

description:
Arrays of this design have barcodes that begin with 16066899 or 2566899

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)

status: Public on Apr 15 2015


title: Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; Sus scrofa)

organism:
Sus scrofa
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344


title: Illumina NextSeq 500 (Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)

organism:
Mus musculus
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344


title: Illumina MiSeq (Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)


title: [BovGene-1_0-st] Bovine Gene 1.0 ST Array [CDF: Brainarray bovgene10st_Bt_ENTREZG, version 16.0.0]

status: Public on Nov 27 2015

organism: Bos taurus

description: This identical to GPL16500 but a custom CDF (brainarray; bovgene10stbtentrezgenecdf, version 16.0.0) environment was used to extract data.


title: NanoString nCounter Nano548 Gene Expression Custom CodeSet

status: Public on Aug 11 2014

city: Barcelona

first: Aleix

last: Prat

address: Passeig Vall d´Hebron 119

department: Translational Genomics

institute: VHIO

organism: Homo sapiens

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Illumina HiSeq 2000 (Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)


title: Agilent-035757 Drosophila 1.0

status: Public on May 02 2014

city: Padova

first: Cristiano

last: De Pitta

address: Via U. Bassi, 58/B

department: Biology

institute: University of Padova

organism: Drosophila melanogaster

description:
Arrays of this design have barcodes that begin with 16035757 or 2535757.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent probe name.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Afirma-T Human Custom Array

status: Public on Jun 24 2012

city: South San Francisco

last: Diggans

address: 7000 Shoreline Ct

institute: Veracyte Inc.

description: CDF file is proprietary.

first: Erik

last: Alexander

first: Giulia

middle: C

last: Kennedy

first: Zubair

middle: W

last: Baloch

first: Edmund

last: Cibas

first: Darya

last: Chudova

first: Lyssa

last: Friedman

middle: T

last: Kloos

first: Virginia

last: LiVolsi

first: Susan

last: Mandel

first: Stephan

middle: S

last: Raab

first: Juan

last: Rosai

first: David

last: Steward

first: Sean

last: Walsh

first: Jonathan

middle: I

last: Wilde

first: Martha

last: Zeiger

middle: B

last: Lanman

first: Bryan

last: Haugen

manufacture_protocol: See manufacturer's web site.


title: Agilent-021322 Horse Gene Expression Microarray [Probe Name version]

status: Public on Feb 03 2012

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

organism: Equus caballus

description:
E. caballus (Horse) Oligo Microarray

Arrays of this design have barcodes that begin with 16021322 or 2521322.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Probe Name.


title: [Tomato] Affymetrix Tomato Genome Array

status: Public on Jan 11 2007

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Solanum lycopersicum

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The comprehensive array consists of over 10,000 L. esculentum probe sets to interrogate over 9,200 L. esculentum transcripts.

Sequence information for this array was selected from public data sources including Lycopersicon esculentum UniGene Build #20 (October 3, 2004) and GenBank® mRNAs up to November 5, 2004.


title: Illumina NextSeq 500 (Escherichia coli)

status: Public on Dec 08 2015

last: GEO

organism: Escherichia coli


title: Agilent-026437 D. rerio (Zebrafish) Oligo Microarray V3 (Probe Name version)

status: Public on Oct 04 2011

organism: Danio rerio

description:
D. rerio (Zebrafish) Oligo Microarray V3

Arrays of this design have barcodes that begin with 16026437 or 2526437.

DesignID : 026437
The ID column includes the Agilent Probe Names.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL14688.

relation: Alternative to: GPL14688 (Feature Number version)