title: TaqMan Rodent miRNA A+B Cards Set v2.0

status: Public on Apr 15 2016

city: Bonn

first: Yong

last: Chen

address: Sigmund-Freud-Strasse 25

country: Germany

institute: University of Bonn

organism:
Mus musculus
Rattus norvegicus

technology: RT-PCR

description: PCR assay

distribution: custom-commercial

manufacture_protocol: see manufacturer's website


title: TaqMan Rodent miRNA A+B Cards Set v3.0

description: PCR assay


title: Agilent-021924 SurePrint G3 Human CGH Microarray 8x60K (Feature number version, hg19:GRCh37:Feb2009)

status: Public on Jun 07 2016

city: Madrid

first: Silvana

last: Mouron

state: Madrid

address: Calle Melchor Fdez Almagro

department: Clinical Research

country: Spain

institute: CNIO

organism: Homo sapiens

technology: in situ oligonucleotide

description: Data table annotations based on hg19:GRCh37:Feb2009

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Exiqon miRCURY LNA microRNA Array, 6th generation (miRBase Release 16)

status: Public on Mar 31 2016

city: Nagoya

first: Hiroshi

middle: I.

last: Suzuki

address: 65 Tsurumai-cho, Showa-ku

department: DIvision of Molecular Oncology, Graduate School of Medicine

country: Japan

institute: Nagoya University

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

technology: spotted oligonucleotide

manufacture_protocol: See manufacturer's website.


title: Blackshear-Mouse-Custom-CodeSet

status: Public on Apr 18 2016

city: RTP

first: NIEHS

last: Microarray Core

state: NC

address: 111 T.W. Alexander Drive

department: DIR

country: USA

institute: NIEHS

organism: Mus musculus

technology: other

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: RIBOBIO human 40K v1.0

city: Hangzhou

first: yicheng

last: chen

address: 3 East Qingchun Road

department: Department of Urology

country: China

institute: Sir Run-Run Shaw Hospital, College of Medicine, Zhejiang University


title: Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Hs133Av2_Hs_REFSEQ_8]

status: Public on Jun 06 2007

city: St. Louis

first: Monika

last: Ray

state: MO

address: 1 Brookings Deive P O Box 1045

institute: Washington University in St. Louis

description: This is identical to GPL571 but a custom CDF environment was used to extract data. The custom CDF (Hs133Av2_Hs_REFSEQ_8) was described by Dai et al., NAR 2005 33(20), PMID: 16284200.  The custom CDF has been linked as a supplementary file at the foot of this record.

relation: Alternative to: GPL571 (Alternative CDF [official])

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2500 (Cucumis hystrix)

last: GEO

organism: Cucumis hystrix

technology: high-throughput sequencing

distribution: virtual


title: [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [Custom CDF: ATH1121501_At_TAIRG_19.0.0]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Arabidopsis thaliana

manufacture_protocol:
see manufacturer's web site
v19.0.0 Arabidopsis Custom CDF from http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF


title: Exiqon miRCURY LNA microRNA Array, 6th generation [miRBase Release 16, condensed Probe ID version]


title: Illumina NextSeq 500 (Homo sapiens; Streptococcus pneumoniae D39)

organism:
Homo sapiens
Streptococcus pneumoniae D39


title: Agilent Synechocystis sp. PCC 6803

first: Himadri

last: Pakrasi

state: Missouri

address: One Brookings Dr.

department: Biology

organism: Synechocystis sp. PCC 6803


title: Illumina HiSeq 2500 (Cucumis x hytivus)

organism: Cucumis x hytivus


title: Illumina HiSeq 1500 (Geobacter metallireducens; Geobacter sulfurreducens; Shewanella oneidensis)

organism:
Geobacter metallireducens
Geobacter sulfurreducens
Shewanella oneidensis


title: Illumina HiSeq 2000 (Ocimum basilicum)

organism: Ocimum basilicum


title: Illumina HiSeq 2000 (Ocimum basilicum; Peronospora belbahrii)

organism:
Ocimum basilicum
Peronospora belbahrii


title: Illumina HiSeq 1500 (Shewanella oneidensis)

organism: Shewanella oneidensis


title: Illumina HiSeq 1500 (Geobacter metallireducens)

organism: Geobacter metallireducens


title: Illumina HiSeq 1500 (Geobacter sulfurreducens)

organism: Geobacter sulfurreducens


title: Illumina Genome Analyzer IIx (Saccharomyces cerevisiae Sigma1278b)

status: Public on Mar 30 2016

organism: Saccharomyces cerevisiae Sigma1278b


title: Illumina HiSeq 2000 (Dichomitus squalens)

status: Public on Mar 29 2016

organism: Dichomitus squalens


title: nCounter Mouse miRNA Expression Assay [miRNA ID]

city: Pittsburgh

first: Andrew

middle: W.

last: Duncan

state: PA

address: 450 Technology Drive, Suite 300

department: Pathology

institute: University of Pittsburgh


title: Illumina Genome Analyzer IIx (Synechococcus elongatus PCC 7942)

organism: Synechococcus elongatus PCC 7942 = FACHB-805


title: Illumina HiSeq 2000 (Saccharomyces cerevisiae Sigma1278b)


title: Agilent-020624 Yersinia pestis 8x15K array

city: Ness-Ziona

first: Ida

last: Steinberger-Levy

address: P.O. box 19

country: Israel

institute: IIBR

organism: Yersinia pestis

distribution: non-commercial

manufacture_protocol: see Agilent website


title: Illumina HiSeq 2500 (Coryphaena hippurus)

organism: Coryphaena hippurus


title: Illumina Genome Analyzer II (Marvinbryantia formatexigens DSM 14469)

organism: Marvinbryantia formatexigens DSM 14469


title: Illumina Genome Analyzer II (Bacteroides thetaiotaomicron VPI-5482; Marvinbryantia formatexigens DSM 14469)

organism:
Bacteroides thetaiotaomicron VPI-5482
Marvinbryantia formatexigens DSM 14469


title: Agilent Custom E. coli Gene Expression Microarray 2x400k (AMADID:72220) by Genotypic Technology Private Limited.

status: Public on Mar 28 2016

city: Hyderabad

first: M Zuhaib

last: Qayyum

state: Telangana

address: Lab of Transcription, CDFD,

country: India

institute: CDFD

organism: Escherichia coli


title: Agilent Custom E. coli Gene Expression Microarray 8x60K (AMADID: 48792) by Genotypic Technology Private Limited.


title: Illumina MiSeq (Acipenser transmontanus)

status: Public on Mar 25 2016

organism: Acipenser transmontanus


title: Illumina HiSeq 2000 (Staphylococcus aureus; Staphylococcus epidermidis)

status: Public on Mar 24 2016

organism:
Staphylococcus aureus
Staphylococcus epidermidis


title: Custom microarray by LC Sciences

city: Glasgow

first: Victoria

last: Gillan

address: bearsden road

country: United Kingdom

institute: University of Glasgow

organism: Haemonchus contortus

manufacture_protocol: Performed by LC Sciences http://www.lcsciences.com/discovery/applications/transcriptomics/mirna-profiling/mirna/


title: Agilent Custom E. coli Gene Expression Microarray 8x15K (AMADID: 020304) by Genotypic Technology Private Limited.


title: Illumina MiSeq (Dunaliella tertiolecta UTEX 'LB 999')

status: Public on Mar 23 2016

organism: Dunaliella tertiolecta UTEX 'LB 999'


title: Illumina HiSeq 2000 (Gorilla gorilla)

organism: Gorilla gorilla


title: Illumina HiSeq 2000 (Acipenser transmontanus)


title: Agilent custom Arabidopsis miRNA array

city: Taipei

first: Hsueh-Fen

last: Juan

address: No. 1, Sec. 4, Roosevelt Road

department: institute of molecular and cellular biology

country: Taiwan

institute: National Taiwan university

organism: Arabidopsis thaliana


title: Ion Torrent Proton (Oryctolagus cuniculus)

organism: Oryctolagus cuniculus


title: Illumina NextSeq 500 (Panicum hallii)

organism: Panicum hallii


title: Illumina HiSeq 3000 (Bos taurus)

organism: Bos taurus


title: OSU-CCC Human and Mouse MicroRNA Microarray Version 4.0 [full layout version]

city: Naples

first: Amelia

last: Cimmino

address: via pietro Castellino 111

department: IGB

country: Italy

institute: CNR

organism:
Homo sapiens
Mus musculus

manufacturer: Microarray Shared Resource, Comprehensive Cancer Center, The Ohio State University (OSU-CCC)

manufacture_protocol: Manufacured using GE Healthcare's CodeLink (TM) 3-D Gel Matrix Technology. CodeLink(tm) Activated Slides are designed to covalently immoblize amine-modified DNA for microarrays. The slides are coated with a 3-D surface chemistry comprised of a long-chain, hydrophilic polymer containing amine-reactive groups. This polymer is covalently crosslinked to itself and to the surface of the slide. The crosslinked polymer, combined with end-point attachment, orients the immobilized DNA, and holds it away from the surface of the slide. The 1x printing buffer consists of 50 mM sodium phosphate at pH 8.5. Codelink slides are manufactured by SurModics and were formally sold as 3D-Link(tm) Activated Slides.   Microarrays are printed with an Omnigrid robotic arrayer by Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead and 16 SMP3 print tips from Telechem (http://www.arrayit.com). The microRNA microarray probe set is based on 40mer oligonucleotides from Sigma-Genosys.   Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in print buffer (150mM sodium phosphate, pH 8.5, 4% sodium sulfate, 0.0001% N-lauryl sarcosyl) to a normalized 25 micromolar concentration. The miRNA microarray spot densities are 200 microns (center-to-center). The microarrays are printed on Codelink Activated Slide (PN300011)) and treated by a method that is an adaptation of the manufacturer's instructions to allow higher throughput processing.


title: Illumina HiSeq 2000 (Staphylococcus epidermidis)

organism: Staphylococcus epidermidis


title: Illumina NextSeq 500 (Ricinus communis)

organism: Ricinus communis


title: Illumina NextSeq 500 (Brassica rapa)

organism: Brassica rapa


title: Illumina NextSeq 500 (Medicago truncatula)

organism: Medicago truncatula


title: RIBOBIO chicken 40K v1.0

city: nanjing

first: Jian

last: Lin

state: jiangsu

address: tongwei road N0.1

department: Life Science

institute: nanjing agricultural university

organism: Gallus gallus

technology: spotted DNA/cDNA


title: Illumina HiSeq 2000 (Theobroma cacao)

organism: Theobroma cacao


title: Illumina HiSeq 2000 (Ricinus communis)


title: Illumina HiSeq 2000 (Panicum virgatum)

organism: Panicum virgatum


title: Illumina HiSeq 2000 (Panicum hallii)


title: Illumina NextSeq 500 (Eucalyptus grandis)

organism: Eucalyptus grandis


title: Illumina NextSeq 500 (Manihot esculenta)

organism: Manihot esculenta


title: Illumina HiSeq 2500 (Epimedium pseudowushanense)

status: Public on Mar 22 2016

organism: Epimedium pseudowushanense


title: Illumina NextSeq 500 (Fragaria vesca)

organism: Fragaria vesca


title: Illumina NextSeq 500 (Cucumis sativus)

organism: Cucumis sativus


title: Illumina HiSeq 2000 (Prochlorococcus marinus subsp. pastoris str. CCMP1986; Prochlorococcus phage P-HM2)

status: Public on Mar 17 2016

organism:
Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus phage P-HM2


title: Corynebacterium glutamicum 30K

city: Seoul

first: Han

middle: Min

last: Woo

address: Hwarangno 14-gil 5, Seongbuk-gu

department: Clean Energy Research Center

country: South Korea

institute: Korea Institute of Science and Technology

organism: Corynebacterium glutamicum

manufacture_protocol: ss-DNA is synthesized in situ on glass substrates functionalized with amines. The synthesis process is proprietary but uses digital micromirror mediated photolithography to generate sufficient acid locally to remove acid labile protecting groups on 5'-terminal phosphoramidite monomers where the next phosphoramidite base will be coupled. The arrays can be used to hybridize cRNA or cDNA


title: Bryderlabb H2B-mCherry mouse HSC fluidigm panel

status: Public on Mar 18 2016

city: Lund

first: Shamit

last: Soneji

address: Solvegatan 19

country: Sweden

institute: BMC

organism: Mus musculus

description: PCR assay

manufacturer: Fluidigm; Invitrogen or IDT for primers not designed by fluidigm

manufacture_protocol: see manufacturer's website, for primers designed by us Primer3 input was used, the assay panel was designed after study of relevant literature, Controls=actb, gapdh,


title: MI MT3001 M tuberculosis

status: Public on Mar 21 2016

city: Saranac Lake

first: Brian

last: Weinrick

state: NY

address: 154 Algonquin Avenue

institute: Trudeau Institute

organism: Mycobacterium tuberculosis

distribution: commercial

manufacture_protocol: printed in triplicate on Corning epoxide slides


title: Agilent-032899 Phaeobacter gallaeciensis 15k Oligo Microarray (Feature number version)

status: Public on Mar 15 2016

city: Třeboň

first: Jürgen

last: Tomasch

address: Novohradská 237

country: Czech Republic

institute: Center Algatech, Institute of Microbiology of the Czech Academy of Science

organism: Phaeobacter gallaeciensis


title: Illumina HiSeq 2500 (Sphingomonas sp. ATCC 31555)

organism: Sphingomonas sp. ATCC 31555


title: AB 5500xl Genetic Analyzer (Human herpesvirus 8)

organism: Human gammaherpesvirus 8


title: Illumina HiSeq 2000 (Beta vulgaris)

organism: Beta vulgaris


title: Illumina NextSeq 500 (Ixodes scapularis)

organism: Ixodes scapularis


title: Zielenska Lab custom nanoString nCounter gene expression codeset

city: Toronto

first: Jeff

middle: W

last: Martin

state: ON

address: 555 University Avenue

country: Canada

institute: Hospital for Sick Children

organism: Homo sapiens

manufacture_protocol: See Geiss GK, Bumgarner RE, Birditt B, et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol 2008;26:317-25.


title: miRCURY LNA microRNA Array, 7th generation, miRBase 20 (Gene ID version)

first: Akihiro

last: Nakamura

address: 60 Leonard Avenue

department: Genetics and Development

institute: University Health Network

organism:
Homo sapiens
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Macacine alphaherpesvirus 1
Human betaherpesvirus 5
human gammaherpesvirus 4
Herpesvirus saimiri (strain 11)
JC polyomavirus
Human immunodeficiency virus 1
Human betaherpesvirus 6B
Human gammaherpesvirus 8
Merkel cell polyomavirus
Betapolyomavirus hominis
Betapolyomavirus macacae

manufacturer: Exiqon A/S, Skelstedet 16, 2950 Vedbaek, Denmark

manufacture_protocol: See Exiqon website


title: Ion Torrent Proton (Enterococcus faecalis)

organism: Enterococcus faecalis


title: miRCURY LNA microRNA Array, 5th generation - hsa, mmu & rno [probe ID version]

status: Public on Mar 19 2016

city: Amsterdam

first: Monique

middle: C.

last: de Jong

address: Plesmanlaan 121

department: Dept of Biological Stress Response and Dept. of Radiation Oncology

country: Netherlands

institute: Netherlands Cancer Institute

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

manufacture_protocol: see manufacturer's website (http://www.exiqon.com/microrna-microarray-analysis-microrna-array)


title: Illumina HiSeq 2000 (Aplysia californica)

last: GEO

organism: Aplysia californica


title: Ion Torrent PGM (Aplysia californica)


title: Illumina HiSeq 1500 (Oncorhynchus mykiss)

organism: Oncorhynchus mykiss


title: Illumina MiSeq (Thermus scotoductus SA-01)

status: Public on Mar 14 2016

organism: Thermus scotoductus SA-01


title: Illumina HiSeq 2500 (Ctenopharyngodon idella)

organism: Ctenopharyngodon idella


title: Ion Torrent Proton (Caenorhabditis elegans)

organism: Caenorhabditis elegans


title: Agilent-027365 Schizosaccharomyces pombe V3 [Probe Name version]

status: Public on Mar 13 2016

last: admin

organism: Schizosaccharomyces pombe

description:
Arrays of this design have barcodes that begin with 16027365 or 2527365.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Aplysia californica)


title: Illumina Genome Analyzer II (Ateles fusciceps)

status: Public on Mar 11 2016

organism: Ateles fusciceps


title: Illumina Genome Analyzer II (Pan paniscus)

organism: Pan paniscus


title: Illumina Genome Analyzer II (Loxodonta africana)

organism: Loxodonta africana


title: T1D protein training array

status: Public on Mar 12 2016

city: Tempe

first: Xiaofang

last: Bian

address: 1001 S. McAllister Ave.

institute: Arizona State University

technology: spotted peptide or protein

description: Nucleic Acid Programmable Protein Array (NAPPA)

manufacture_protocol: see Nucleic Acid Programmable Protein UNIT 27.2 Arrays: Versatile Tools for Array-Based Functional Protein Studies by Shane Miersch1 and Joshua LaBaer in Current Protocols in Protein Science


title: Illumina HiSeq 2500 (Pantherophis guttatus)

status: Public on Mar 09 2016

organism: Pantherophis guttatus


title: Agilent-025480 Candida albicans Custom Expression Array (Probe name version)

city: Hsinchu

first: Pei-Wen

last: Tsai

address: Kuang-Fu Rd.

institute: National Tsing Hua University

organism: Candida albicans


title: Illumina NextSeq 500 (Desulfovibrio vulgaris str. Hildenborough)

organism: Nitratidesulfovibrio vulgaris str. Hildenborough


title: BaSysBio Staphylococcus aureus T1 385K array 080604_SA_JH_Tiling (gene level)

status: Public on Mar 08 2016

city: Jouy-en-Josas

first: Pierre

last: Nicolas

address: INRAE - Domaine de Vilvert

country: France

institute: INRAE - Université Paris-Saclay

organism: Staphylococcus aureus subsp. aureus NCTC 8325

description:
CP000253.1
080604_SA_JH_Tiling.ndf
080604_SA_JH_Tiling.pos

manufacture_protocol: High-density DNA array produced by NimbleGen (Madison, WI USA) with Maskless Array Synthesizer (MAS) technology.


title: State Key Laboratory Human microRNA array 1858

city: Guangzhou

first: Mei-Yin

last: Zhang

state: Guangdong

address: 651 Dongfeng East Road

institute: Sun Yat-sen University Cancer Center

organism: Homo sapiens

description: nasopharyngeal carcinoma cell

manufacturer: State Key Laboratory of Oncology in South China,Sun Yat-sen University

manufacture_protocol: 1858 microRNA probes were printed onto slides using the SmartArrayerTM 136 printer (CapitalBio,Inc.,Beijing,China)


title: BaSysBio Staphylococcus aureus T1 385K array 110831_SA_JH_Tiling

description:
CP000253.1
110831_SA_JH_Tiling.ndf
110831_SA_JH_Tiling.pos

manufacture_protocol: High-density DNA array produced by NimbleGen with Maskless Array Synthesizer (MAS) technology.


title: Illumina HiSeq 2000 (Plasmodium berghei)

status: Public on Mar 07 2016

organism: Plasmodium berghei


title: Illumina HiSeq 2000 (mixed sample)

organism: mixed sample


title: Illumina HiSeq 2500 (Neurospora crassa OR74A)

organism: Neurospora crassa OR74A


title: Illumina MiSeq (Mycobacterium smegmatis str. MC2 155)

organism: Mycolicibacterium smegmatis MC2 155


title: BaSysBio Staphylococcus aureus T1 385K array 080604_SA_JH_Tiling (probe level)


title: Illumina HiSeq 2500 (Leptospira interrogans serovar Manilae)

organism: Leptospira interrogans serovar Manilae


title: Illumina MiSeq (Anoxybacillus sp. SK3-4)

status: Public on Mar 04 2016

organism: Anoxybacillus ayderensis


title: Illumina HiSeq 2500 (Callithrix jacchus)

status: Public on Mar 10 2016

organism: Callithrix jacchus


title: Illumina HiSeq 2500 (Sorghum bicolor)

organism: Sorghum bicolor


title: Illumina HiSeq 2000 (Ranunculus trichophyllus)

organism: Ranunculus trichophyllus


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [Hugene20st_Hs_ENST_20.0.0]

city: Bethesda

first: GEO

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: custom CDF (Hugene20st_Hs_ENST_20.0.)

manufacture_protocol: See manufacturer's web site


title: Illumina HiSeq 2000 (Panax japonicus)

organism: Panax japonicus


title: Agilent-034068/ArrayStar Mouse LncRNA microarray V2.0 (8x60K) [coding transcripts]

city: San Francisco

first: Barbara

last: Panning

state: CALIFORNIA

address: 600, 16TH STREET, S374 - Genentech Hall,

department: Biochemistry and Molecular biology

institute: University of California, San Francisco

organism: Mus musculus

description:
Agilent array sold through ArrayStar.
The array includes coding and non-coding transcripts. This Platform includes coding transcripts; it does not include the non-coding transcripts.
The following links have the ArrayStar details for the array:
http://www.arraystar.com/news/news_main.asp?id=253
http://www.arraystar.com/manage/UploadFile/201167194842886.pdf
http://www.arraystar.com/supports/support_main.asp?id=249

manufacture_protocol: See Agilent website (www.agilent.com).


title: Illumina HiSeq 4000 (Chlorocebus sabaeus)

organism: Chlorocebus sabaeus


title: Illumina Genome Analyzer IIx (Lotus japonicus)

organism: Lotus japonicus


title: Arraystar Human RefSeq Promoter Array

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

description:
Agilent-065849
HG19
Arraystar Human RefSeq Promoter Array is designed to investigate the epigenetic modifications and transcription factor binding sites within RefSeq Gene promoter regions, and uncover other biologically significant genomic regions.
23148 RefSeq gene promoters (from -1300 to +500 bp)

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Extracellular Matrix and Adhesion Molecules PCR Array (Qiagen).

status: Public on Mar 03 2016

city: Kumamoto

first: Wakana

last: Nakayama

address: 1-1-1 Honjo

department: Department of Dermatology & Plastic Surgery

institute: Faculty of Life Sciences, Kumamoto University

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Human Extracellular Protein Microarray, Gonzalez lab, Genentech (PM_GNE)

city: South San Francisco

first: Nadia

last: Martinez

state: California

address: 470 East Grand Avenue

institute: Genentech

manufacture_protocol: Preparation of the human extracellular libraries, as well as the implementation of the protein microarray platform for extracellular protein-protein interaction discovery has been described in detail in the following publications (Tom, I., Lewin-Koh, N., Ramani, S. R., and Gonzalez, L. C., Protein microarrays for identification of novel extracellular protein-protein interactions. Curr Protoc Protein Sci Chapter 27, Unit 27 3 (2013); Ramani, S. R. et al., A secreted protein microarray platform for extracellular protein interaction discovery. Anal Biochem 420 (2), 127 (2011).


title: Agilent-031795 L.lactis_and_2_phages

city: Kgs. Lyngby

first: Mogens

last: Kilstrup

address: Building 301 room 158

department: DTU Systems Biology

country: Denmark

institute: Technical University of Denmark

organism: Lactococcus lactis

description:
L. lactis + 2 phages

Arrays of this design have barcodes that begin with 16031795 or 2531795.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-015235 Rat Genome CGH Microarray 105A (Probe Name version)

city: Palo Alto

last: Agilent Technologies

state: CA

institute: Agilent Technologies

organism: Rattus norvegicus

description: *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL21556.


title: Agilent-015235 Rat Genome CGH Microarray 105A (Feature Number version)

description:
Rat Genome CGH Microarray 105A

Arrays of this design have barcodes that begin with 16015235 or 2515235.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL21557.


title: Illumina HiSeq 1000 (Podospora anserina)

status: Public on Mar 01 2016

organism: Podospora anserina


title: Illumina HiSeq 1500 (Escherichia coli K-12)

status: Public on Mar 02 2016

organism: Escherichia coli K-12


title: Illumina HiSeq 2500 (Oikopleura dioica)

organism: Oikopleura dioica


title: Illumina HiSeq 2000 (Cryptococcus neoformans var. grubii H99)

organism: Cryptococcus neoformans H99


title: Illumina HiSeq 2000 (Polypedilum vanderplanki)

organism: Polypedilum vanderplanki


title: Illumina HiSeq 2000 (Macrobrachium nipponense)

organism: Macrobrachium nipponense


title: Illumina HiSeq 2000 (Mycobacterium abscessus)

organism: Mycobacteroides abscessus


title: Illumina HiSeq 2000 (Desulfovibrio vulgaris)

organism: Nitratidesulfovibrio vulgaris


title: Agilent-047111 MAD_MMv2_Agilent_E_135 Mouse Custom microarray (GeneID version)

first: Oskar

last: Bruning

address: Science Park 904

department: SILS

institute: University of Amsterdam


title: NimbleGen Japanese cedar male flower 72K

city: Hitachi

first: Miyoko

last: Tsubomura

state: Ibaraki

department: Forest Tree Breeding Center

institute: Forestry and Forest Products Research Institute

organism: Cryptomeria japonica

description: NimbleGen design name 110119_RDKK293_Cjap_expr_X4

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Agilent-047217 ch4array_v3 (SPOT_ID version)

organism: Saccharomyces cerevisiae


title: University of Groningen Lactococcus lactis MG1363 amplicon/oligo 2 X 2.5K [includes plasmids and pseudogenes]

city: Delft

first: Claire

last: Price

address: Alexander Fleminglaan

department: DFS

institute: DSM

organism: Lactococcus cremoris subsp. cremoris MG1363

description: Platform includes plasmid and pseudo genes.

manufacture_protocol: General Microgrid II spotting protocol on superamine slides


title: Agilent-047217 ch4array_v3

status: Public on Sep 23 2015

city: Durham

first: Karen

middle: Eileen

last: O'Connell

address: Box 3054 DUMC

department: Molecular Genetics and Microbiology

institute: Duke University

description:
Arrays of this design have barcodes that begin with 16047217 or 2547217.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-024126 Poplar 4x44K (Feature number version)

city: Gainesville

first: Christopher

last: Dervinis

state: FL

address: 2033 Mowry Road, rm 320

department: SFRC

institute: University of Florida

organism: Populus trichocarpa

description:
43803 probes
Poplar microarray with probes designed for use in P. deltoides and P.trichocarpa

Arrays of this design have barcodes that begin with 16024126 or 2524126.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-031671 Chr4 RA V2 027289 (SPOT_ID version)

description: S288c vs YJM789 SNPs chromosome 4.


title: PacBio RS II (Mus musculus)

status: Public on Jan 26 2015

last: GEO

organism: Mus musculus


title: Bio-Rad QX100 Droplet Digital PCR System with Duplex TaqMan Assays

city: St. Louis

first: Jinsheng

last: Yu

address: 660 S. Euclid Ave.

department: Genetics

institute: Washington University School of Medicine

organism: Homo sapiens

description:
Droplet Digital PCR (ddPCR) and TaqMan chemistry
1863001 (QX100 System) and 4331182,4351372,4426961 (Applied Biosystems Inc.)
FAM/VIC dual reporter dye real-time quantitaive PCR
ddPCR provides absolute quantification of target DNA in digital form.

manufacturer: Bio-Rad Laboratories Inc. and Life Technologies (Applied Biosystems Inc.)


title: Agilent-027365 Schizosaccharomyces pombe V3

status: Public on Mar 01 2015

first: Jesse

middle: J

last: Lipp

address: 600 16th Street

institute: UCSF

organism: Schizosaccharomyces pombe

description:
Arrays of this design have barcodes that begin with 16027365 or 2527365.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2000 (Vibrio cholerae O1 str. C6706)

status: Public on Mar 08 2012

organism: Vibrio cholerae O1 str. C6706


title: Affymetrix Human Gene 1.0 ST Array [Gene Symbols]

status: Public on Dec 01 2014

city: Boston

first: Kathryn

last: Penney

address: 181 Longwood Ave

department: Medicine

institute: Brigham and Women's Hospital


title: Agilent-027516 Human 180K Array (Probe name version)

city: Vancouver

first: Shawn

last: Anderson

state: BC

address: 2660 Oak Street

institute: Vancouver Prostate Centre

description: GenomicBuild = hg19:GRCh37:Feb2009

manufacture_protocol: See manufacturer's website


title: Agilent-031671 Chr4 RA V2 027289

description:
S288c vs YJM789 SNPs chromosome 4.

Arrays of this design have barcodes that begin with 16031671 or 2531671.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2000 (Caulobacter crescentus CB15)

status: Public on Apr 10 2013

organism: Caulobacter vibrioides CB15


title: NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [100718_HG18_CpG_Refseq_Prom_MeDIP]

status: Public on May 10 2013

city: Madison

first: Inc

last: Nimblegen Systems

state: WI

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

description:
Build: Hg18, NCBI 36
50-75mer probes.

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: PICME Poplar 28K Series 3

status: Public on Nov 18 2009

city: Southampton

first: Gail

last: Taylor

address: Bassett Crescent East

institute: University of Southampton

organism:
Populus trichocarpa x Populus deltoides
Populus euphratica
Populus tremula x Populus alba

description:
This platform represents all slides of Series 3, i.e. 3_1_4, 3_1_5 and 3_2_1, which are fully identical in their properties.
Lot number: 10205000B
Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane
Number of spots: 27.648
Number of pins/blocks: 48
Spottdistance in µm: 180
Recurrances spots/slide: 1
Number of spots vertical: 24
Number of spots horinzontal: 24
Vertical offset of first block in µm: 1200
Horizontal offset of first block in µm: 3150

manufacturer: Austrian Research Centers GmbH - ARC, PICME

first: F

last: Martin

first: J

middle: C

last: Leple

last: Kangasjarvi

first: S

last: Fluch

manufacture_protocol:
Spottingbuffer: 3xSSC+ 1,5MBetain
Spottingplate setting: Biozym 10µl
Arrayer Hardware: GeneMachines Omnigrid II
Arrayer Software: OmniGrid Gridder 2.2.13
Humidity: 40%
Dipping time in sec: 1


title: Agilent-021193 Canine (V2) Gene Expression Microarray (ProbeName version)

status: Public on Mar 27 2012

last: Agilent Technologies

organism: Canis lupus familiaris

description:
This is the ProbeName version of GPL13605 [Feature Number version]

C. familiaris (Dog) Oligo Microarray (V2)

Arrays of this design have barcodes that begin with 16021193 or 2521193.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: 034068 Arraystar Mouse LncRNA microarray V2.0

status: Public on Jun 16 2012

first: Panos

last: Pan

description: Design ID 034068


title: Illumina HiSeq 4000 (synthetic construct)

status: Public on Mar 18 2016

organism: synthetic construct


title: [OncoScan_CNV] Affymetrix OncoScan CNV FFPE Assay

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

description:
OncoScan_CNV.na33.r1.annot.csv
#%create_date=2013-09-24 GMT-08:00 18:05:59
#%chip_type=OncoScan_CNV
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=37
#%genome-version-create_date=2009-02-00
#%dbSNP-date=2011-03-11
#%dbSNP-version=135
#%hapmap-date=2008-01-08
#%hapmap-version=23
#%dgv-date=2010-10-00
#%dgv-version=10
#%netaffx-annotation-date=2012-11-05
#%netaffx-annotation-netaffx-build=33

manufacture_protocol: see manufacturer's web site


title: Illumina Genome Analyzer IIx (Arabidopsis thaliana)

status: Public on Nov 17 2010

organism: Arabidopsis thaliana