title: Illumina MiSeq (Fusarium solani)

status: Public on May 31 2016

last: GEO

country: USA

organism: Fusarium solani

technology: high-throughput sequencing

distribution: virtual


title: Agilent-049626 Horse miRNA

city: Warsaw

first: Tomasz

last: Sadkowski

address: Nowoursynowska 159

department: Department of Physiological Sciences

country: Poland

institute: Warsaw University of Life Sciences - SGGW

organism: Equus caballus

technology: in situ oligonucleotide

description:
Arrays of this design have barcodes that begin with 16049626 or 2549626.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina MiSeq (Fusarium oxysporum)

organism: Fusarium oxysporum


title: Agilent-016322 Yeast Gene expression 8x15K Array (gene symbol version, AMADID: 016322)

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Saccharomyces cerevisiae


title: Illumina HiSeq 2500 (Bdellovibrio bacteriovorus HD100)

status: Public on May 30 2016

organism: Bdellovibrio bacteriovorus HD100


title: Agilent-059520 Human custom CGH Microarray Hyogo_College_Of_Medicine_01 (Probe name version)

status: Public on Nov 13 2016

city: Nishinomiya

first: Yoshie

last: Yoshikawa

state: Hyogo

address: 1-1 Mukogawa-cho

department: Genetics

country: Japan

institute: Hyogo College of Medicine

organism: Homo sapiens


title: HiSeq X Five (Aedes aegypti)

organism: Aedes aegypti


title: Illumina Infinium OncoArray-500k v1.0

status: Public on Aug 16 2016

city: L'Hospitalet del Llobregat

first: Sebastian

last: Moran

state: Barcelona

address: Av. Gran Via de l'Hospitalet, 199-203

department: PEBC

country: Spain

institute: IDIBELL

technology: oligonucleotide beads

manufacture_protocol: see website


title: Hs-ATC7.6k-v5px_16Bx22Cx22R

status: Public on May 28 2016

city: Rockville

first: Mervi

last: Heiskanen

state: MD

address: 9609 Medical Center Drive, 1W378

department: CBIIT

institute: NCI

technology: spotted DNA/cDNA

distribution: non-commercial

manufacturer: National Cancer Institute microarray facility

manufacture_protocol: see manufacturer's website


title: NanoString nCounter GX 19 Custom

status: Public on Aug 01 2017

city: Singapore

first: Steve

last: Rozen

address: 8 College Road

country: Singapore

institute: Duke-NUS

technology: other

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: GeoChip 5.0 180K

city: Beijing

first: Haowei

last: Yue

address: School of Environment

country: China

institute: Tsinghua University

organism: uncultured soil microorganism


title: Illumina MiSeq (Mycobacterium phage Charlie; Mycobacterium smegmatis str. MC2 155)

status: Public on May 27 2016

organism:
Mycolicibacterium smegmatis MC2 155
Mycobacterium phage Charlie


title: Illumina MiSeq (Mycobacterium phage MichelleMyBell; Mycobacterium smegmatis str. MC2 155)

organism:
Mycolicibacterium smegmatis MC2 155
Mycobacterium phage MichelleMyBell


title: Illumina MiSeq (Mycobacterium phage Xerxes; Mycobacterium smegmatis str. MC2 155)

organism:
Mycolicibacterium smegmatis MC2 155
Mycobacterium phage Xerxes


title: Illumina MiSeq (Mycobacterium phage Panchino; Mycobacterium smegmatis str. MC2 155)

organism:
Mycolicibacterium smegmatis MC2 155
Mycobacterium phage Panchino


title: Illumina MiSeq (Mycobacterium phage Redi; Mycobacterium smegmatis str. MC2 155)

organism:
Mycolicibacterium smegmatis MC2 155
Mycobacterium phage Redi


title: Illumina MiSeq (Mycobacterium phage Xeno; Mycobacterium smegmatis str. MC2 155)

organism:
Mycolicibacterium smegmatis MC2 155
Mycobacterium phage Xeno


title: Illumina MiSeq (Mycobacterium phage Phrann; Mycobacterium smegmatis str. MC2 155)

organism:
Mycolicibacterium smegmatis MC2 155
Mycobacterium phage Phrann


title: [MTA-1_0] Affymetrix Mouse Transcriptome Array 1.0 [transcript (gene) version]

status: Public on May 29 2016

city: 91400 Orsay

first: Florent

last: Dumont

state: Ile de France

address: 17 avenue des sciences

country: France

institute: Université Paris-Saclay

organism: Mus musculus

manufacture_protocol: See manufacturer's website.


title: Illumina HiSeq 2000 (Leishmania major strain Friedlin)

organism: Leishmania major strain Friedlin


title: Illumina HiSeq 2000 (Lonicera japonica)

status: Public on May 26 2016

organism: Lonicera japonica


title: Exiqon miRCURY LNA microRNA Array, v.11.0 - hsa, mmu & rno  [condensed miRNA version]

status: Public on May 23 2016

first: Kandiah

last: Jeyaseelan

address: 8 Medical Drive

department: Biochemistry

institute: National University of Singapore

technology: spotted oligonucleotide

description: human miRNAs annotated in miRBase version 11.0

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 2000 (Metarhizium robertsii ARSEF 23)

organism: Metarhizium robertsii ARSEF 23


title: Human UniGem10K spotted cDNA array


title: AB 5500xl-W Genetic Analysis System (Saccharomyces cerevisiae)

status: Public on May 25 2016


title: Protein Microarray_NHBA

city: Siena

first: Erika

last: Bartolini

state: Italy

address: Via Fiorentina 1

department: AIMB

country: Italy

institute: GSK Vaccines

organism: Neisseria meningitidis

technology: spotted peptide or protein

description:
A panel of 37 recombinant fragments of different length spanning the entire sequence of NHBA-NUbp plus different full length NHBA variants were printed in 8 replicated on no-commercial Protein Microarray. All fragments were expressed in E. coli as either glutathione S-transferase-, His-tagged or TRX-fusions, purified from the cytoplasmic fraction as soluble forms. Meningococcal protein fragments unrelated to NHBA-Nubp are spotted on the array to be used in different mapping studies. Mouse IgG (at 8 different concentration points) was distributed in each array copy as control.

spotted purified recombinant proteins

manufacturer: Molecular biology Lab, AIMB, GSK Vaccines

manufacture_protocol: Purified recombinant protein were diluted at final concentration of 0.5 mg/ul in 40% glycerol and transferred into 384-well microtiterplates. One droplet of 0.2 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Schleicher and Schuell) using the non-contact printer Marathon Spotter (Arrayjet, Edinburgh, UK). Printing was performed in a cabinet with controlled humidity and temperature (55-60% and 12 °C respectively), resulting in spots of 90-110 μm in diameter range. Each protein was printed in 8 replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store a 4°C.


title: 454 GS FLX Titanium (Triticum aestivum)

status: Public on May 24 2016

organism: Triticum aestivum


title: Illumina HiSeq 2500 (Plasmodium yoelii)

organism: Plasmodium yoelii


title: Agilent-024568 ecoli_tiling_60_10_adam 020097 [Probe Name version]

city: New York

first: Anupama

last: Khare

state: NY

address: 1150 St. Nicholas Ave., Room 406

institute: Columbia University

organism: Escherichia coli

description:
Arrays of this design have barcodes that begin with 16024568 or 2524568.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Probe Name.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2000 (Trametes versicolor)

organism: Trametes versicolor


title: Illumina NextSeq 500 (Equisetum)

status: Public on May 20 2016

organism: Equisetum


title: Illumina HiSeq 1000 (Oryza sativa)

organism: Oryza sativa


title: Nanostring Sodora-H.sapiens_M.mulatta_148

city: Seattle

first: Donald

last: Sodora

state: WA

address: 307 Westlake Ave N Ste. 500

institute: Center for Infectious Disease Research

organism:
Macaca mulatta
Homo sapiens

description: Digital Barcode & hybridization


title: Illumina HiSeq 2500 (Equus caballus)

organism: Equus caballus


title: Illumina NextSeq 500 (Araucaria)

organism: Araucaria


title: Illumina MiSeq (Mycobacterium phage Butters; Mycobacterium smegmatis str. MC2 155)

organism:
Mycolicibacterium smegmatis MC2 155
Mycobacterium phage Butters


title: Illumina NextSeq 500 (Selaginella kraussiana)

organism: Selaginella kraussiana


title: Illumina NextSeq 500 (Synsepalum dulcificum)

organism: Synsepalum dulcificum


title: Illumina HiSeq 1000 (Trypanosoma brucei)

organism: Trypanosoma brucei


title: Illumina HiSeq 2500 (Leptosphaeria maculans)

organism: Plenodomus lingam


title: Illumina NextSeq 500 (Cephalotaxus harringtonia)

organism: Cephalotaxus harringtonia


title: Illumina NextSeq 500 (Cyathea)

organism: Cyathea


title: Illumina NextSeq 500 (Yucca brevifolia)

organism: Yucca brevifolia


title: Illumina NextSeq 500 (Hypericum perforatum)

organism: Hypericum perforatum


title: Illumina NextSeq 500 (Amentotaxus formosana)

organism: Amentotaxus formosana


title: Illumina NextSeq 500 (Torreya taxifolia)

organism: Torreya taxifolia


title: Illumina NextSeq 500 (Microsorum punctatum)

organism: Microsorum punctatum


title: Illumina NextSeq 500 (Cyperus papyrus)

organism: Cyperus papyrus


title: Illumina NextSeq 500 (Papuacedrus papuana)

organism: Papuacedrus papuana


title: Illumina NextSeq 500 (Pereskia grandiflora)

organism: Pereskia grandiflora


title: Illumina NextSeq 500 (Thuja sutchuenensis)

organism: Thuja sutchuenensis


title: Illumina NextSeq 500 (Nepenthes bicalcarata)

organism: Nepenthes bicalcarata


title: Illumina NextSeq 500 (Lupinus angustifolius)

organism: Lupinus angustifolius


title: Illumina NextSeq 500 (Urtica dioica)

organism: Urtica dioica


title: Illumina NextSeq 500 (Manoao colensoi)

organism: Manoao colensoi


title: Illumina NextSeq 500 (Juniperus virginiana)

organism: Juniperus virginiana


title: Illumina NextSeq 500 (Amentotaxus argotaenia)

organism: Amentotaxus argotaenia


title: Illumina NextSeq 500 (Impatiens niamniamensis)

organism: Impatiens niamniamensis


title: Illumina NextSeq 500 (Aristolochia grandiflora)

organism: Aristolochia grandiflora


title: Illumina NextSeq 500 (Gnetum gnemon)

organism: Gnetum gnemon


title: Illumina NextSeq 500 (Kalanchoe tomentosa)

organism: Kalanchoe tomentosa


title: Illumina NextSeq 500 (Psilotum)

organism: Psilotum


title: Illumina NextSeq 500 (Encephalartos horridus)

organism: Encephalartos horridus


title: Illumina NextSeq 500 (Aloe vera)

organism: Aloe vera


title: Illumina NextSeq 500 (Diplazium proliferum)

organism: Diplazium proliferum


title: Illumina NextSeq 500 (Chamaecyparis hodginsii)

organism: Chamaecyparis hodginsii


title: Illumina NextSeq 500 (Dacrydium balansae)

organism: Dacrydium balansae


title: Illumina NextSeq 500 (Dacrycarpus compactus)

organism: Dacrycarpus compactus


title: Agilent-038160 USC Turbot 45k Custom  array v1.0 (Probe name version)

city: Santiago de Compostela

first: Diego

last: Robledo

address: Rúa Lope Gómez de Marzoa s/n CIBUS building

institute: University of Santiago de Compostela

organism: Scophthalmus maximus

manufacture_protocol: In situ oligo synthesis


title: Illumina NextSeq 500 (Cissus quadrangularis)

organism: Cissus quadrangularis


title: Illumina NextSeq 500 (Celtis occidentalis)

organism: Celtis occidentalis


title: Agilent-083222 PerouLab_Mouse_4X44K_Custom_V1

city: Chapel Hill

first: Charles

middle: M.

last: Perou

state: NC

address: 12-044 Lineberger Comprehensive Cancer Center CB# 7295

department: Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center

institute: University of North Carolina at Chapel Hill

organism: Mus musculus

description:
Arrays of this design have barcodes that begin with 16083222 or 2583222.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: miRCURY LNA™ microRNA Array (5th gen - hsa, mmu & rno) [miRBase version 15.0 + miRPlus]

status: Public on May 19 2016

city: Oxford

first: Cheen

last: Khoo

address: John Radcliffe Hospital Oxford

country: United Kingdom

institute: NHSBT

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

description: Product no: 208300-A (208301-A / 208302-A); miRBase version:miRBase 15.0 + miRPlus


title: AB SOLiD System 3.0 (Pleurotus ostreatus)

status: Public on May 18 2016

organism: Pleurotus ostreatus


title: Illumina HiSeq 2000 (Candida tropicalis)

status: Public on May 17 2016

organism: Candida tropicalis


title: [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [CDF: mogene10st_Mm_ENTREZG_20]

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: This is identical to GPL6246 but a custom cdf environment was used to extract data. The cdf can be found at the link below.


title: Illumina Genome Analyzer II (Saccharomyces paradoxus)

status: Public on May 11 2016

last: GEO

organism: Saccharomyces paradoxus


title: Illumina HiSeq 2000 (Metallosphaera sedula)

status: Public on May 13 2016

organism: Metallosphaera sedula


title: Illumina HiSeq 2500 (Populus tremula x Populus alba)

status: Public on May 12 2016

organism: Populus tremula x Populus alba


title: Illumina Genome Analyzer II (Saccharomyces mikatae)

organism: Saccharomyces mikatae


title: Illumina HiSeq 2000 (Oryzias melastigma)

organism: Oryzias melastigma


title: [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [CDF: mogene10st_Mm_ENTREZG_19]


title: Agilent-033172 Bifidobacterium longum subsp. Infantis array [TFRC_BLON_8x15K]

city: Fermoy

first: Rita

last: Hickey

state: County Cork

address: Moorepark

department: Food Bioscience

country: Ireland

institute: Teagasc Food Research Centre

organism: Bifidobacterium longum subsp. infantis

description: Bifidobacterium longum subsp. Infantis ATCC15697

manufacture_protocol: Chemical in-situ oligonucleotide synthesis


title: NimbleGen Drosophila melanogaster 12X135K Gene Expression Array [100718_Dmel_exp; PROBE_ID version]

city: Madison

first: Inc

last: Nimblegen Systems

state: WI

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

organism: Drosophila melanogaster

description:
DesignID: 535513

native array description file:100718_Dmel_exp.ngd
native array description file:100718_Dmel_exp.ndf
native array description file:100718_Dmel_exp_HX12.ncd

distribution: commercial

manufacture_protocol: Drosophila melanogaster 12X135K Array. (http://www.nimblegen.com/products/expression/eukarya/dmelanogaster/12x135k/index.html).


title: miRCURY LNA microRNA Array, 5th generation - hsa, mmu & rno [miRBase 18.0]

city: Montreal

first: R. Thomas

last: Jagoe

state: Quebec

address: Jewish General Hospital, 3755 Cote Ste Catherine

department: Medicine

country: Canada

institute: McGill University

organism:
Homo sapiens
Mus musculus
Rattus norvegicus
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Human betaherpesvirus 5
human gammaherpesvirus 4
JC polyomavirus
Human immunodeficiency virus 1
Murid gammaherpesvirus 4
Human gammaherpesvirus 8
Merkel cell polyomavirus
Mus musculus cytomegalovirus 2
Betapolyomavirus hominis
Betapolyomavirus macacae

description: Human, Mouse, Rat and related viral sequence from miRBase 18.0 and miRPlus


title: miRCURY LNA microRNA Array, v.11.0 - hsa, mmu & rno [miRBase 18.0]

organism:
Homo sapiens
Mus musculus
Rattus norvegicus
Human alphaherpesvirus 1
Human betaherpesvirus 5
Murid betaherpesvirus 1
human gammaherpesvirus 4
JC polyomavirus
Human immunodeficiency virus 1
Murid gammaherpesvirus 4
Human gammaherpesvirus 8
Betapolyomavirus hominis
Betapolyomavirus macacae


title: 065848 Arraystar Human Noncoding Promoter Array

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

organism: Homo sapiens

description:
Agilent-065848
HG19
Arraystar Human 4x180 K ncRNA Promoter Microarrays are specifically designed for the unbias identification of epigenetic modifications and transcription factor (TF) binding sites within 27, 248 LncRNA promoter regions by using 60-mer tiling probes at approximately 230 bp spacing. In addition, our Human ncRNA Promoter Array can also interrogate 622 miRNA promoters. Further, probes for positive, negative are included to facilitate experimental performance assessment.

27248 LncRNA promoters (from -1300 to +500 bp) & 622 miRNA promoters (host gene's promoter or from -50 kb to miRNA)


title: miRCURY LNA microRNA Array, 6th generation - hsa, mmu & rno [miRBase 18.0]

organism:
Homo sapiens
Mus musculus
Rattus norvegicus
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Human betaherpesvirus 5
Murid betaherpesvirus 1
human gammaherpesvirus 4
JC polyomavirus
Human immunodeficiency virus 1
Murid gammaherpesvirus 4
Human gammaherpesvirus 8
Merkel cell polyomavirus
Mus musculus cytomegalovirus 2
Betapolyomavirus hominis
Betapolyomavirus macacae


title: A-UMCU-Y44K-4.0

city: Utrecht

first: Marian

last: Groot Koerkamp

state: Utrecht

address: Heidelberglaan 25

department: Research

country: Netherlands

institute: Princess Maxima Center for Pediatric Oncology

organism: Saccharomyces cerevisiae

manufacturer: Holstege Lab, UMC Utrecht, The Netherlands

first: Dik

last: van Leenen

first: Philip

last: Lijnzaad

first: Patrick

last: Kemmeren

first: Frank

last: Holstege

manufacture_protocol: 1. Slides are obtained from a commercial provider (Agilent) and reannotated using Blat to obtain the latest gene annotations from Ensembl.


title: Human Cancer Drug Targets RT2 Profiler

city: Sarajevo

first: Lejla

last: Pojskic

address: Zmaja od Bosne 8

country: Bosnia and Herzegovina

institute: Institute for Genetic Engineering and Biotechnology

technology: RT-PCR

description:
PCR assay
SABiosciences RT² Profiler panel of PCR assays.


title: Illumina HiSeq 1500 (Burkholderia thailandensis E264)

organism: Burkholderia thailandensis E264


title: 065940 Arraystar Mouse ncRNA Promoter Array

organism: Mus musculus

description:
Agilent-065940
MM9
Arraystar Mouse 4x180 K ncRNA Promoter Microarrays are specifically designed for the unbias identification of epigenetic modifications and transcription factor (TF) binding sites within 18,552 LncRNA promoter regions by using 60-mer tiling probes at approximately 165 bp spacing. In addition, our Mouse ncRNA Promoter Array can also interrogate 346 miRNA promoters. Further, probes for positive, negative are included to facilitate experimental performance assessment.

18552 LncRNA promoters (from -1300 to +500 bp) & 346 miRNA promoters (host gene?s promoter or from -50 kb to miRNA)


title: Illumina HiSeq 2000 (Neisseria meningitidis MC58)

organism: Neisseria meningitidis MC58


title: Agilent-080900 Custom Mycobacterium tuberculosis H37Ra Expression Microarray

city: 上海

first: pan

last: zhong

state: 上海

address: 上海市徐汇区虹漕路421号63栋2楼

institute: 上海康成生物工程有限公司

organism: Mycobacterium tuberculosis

description:
Mycobacterium tuberculosis H37Ra
The Mycobacterium_tuberculosis H37Ra custom Microarray is a broad view that represents well-known and predicted Mycobacterium tuberculosis genes and transcripts. Coupled with NCBI’s gene prediction processes and Agilent's probe selection, this design delivers increased data quality and less gene coverage redundancy.
• 4084 Mycobacterium_tuberculosis H37Ra genes and transcripts represented, all with public annotations
• Each of gene has 1 different probes, every probe have 3~4 replication
• Sequence content sourced from NCBI Goldenpath
• ALL of the represented probes are Designed by Agilent's eArray
• Sequence orientation, accuracy, and clustering assembly classification validated with Mycobacterium_tuberculosis_H37Ra
• 8 X 15K slide formats printed using Agilent's 60-mer SurePrint technology


title: Agilent-081126 Custom Mycobacterium tuberculosis H37Rv Expression Microarray

address: 上海市徐汇区虹漕路421号63栋2楼

institute: 上海康成生物工程有限公司

description:
Agilent-081126
Mycobacterium tuberculosis H37Rv
The Mycobacterium_tuberculosis H37Rv custom Microarray is a broad view that represents well-known and predicted Mycobacterium tuberculosis genes and transcripts. Coupled with NCBI’s gene prediction processes and Agilent's probe selection, this design delivers increased data quality and less gene coverage redundancy.
• 3975 Mycobacterium_tuberculosis H37Rv genes and transcripts represented, all with public annotations
• Each of gene has 1 different probes, every probe have 3~4 replication
• Sequence content sourced from NCBI Goldenpath
• ALL of the represented probes are Designed by Agilent's eArray
• Sequence orientation, accuracy, and clustering assembly classification validated with Mycobacterium_tuberculosis_H37Rv
• 8 X 15K slide formats printed using Agilent's 60-mer SurePrint technology


title: Nanostring Macaca Mulatta PC_niche

first: Marjorie

last: Robert-Guroff

address: 41 Medlars Drive

department: Vaccine Branch

institute: National Cancer Institute

organism: Macaca mulatta

description: barcoded primer/probe pairs directly detected


title: Microarrays Inc. seawater metagenome array BC013

city: Princeton

first: Bess

middle: B

last: Ward

state: NJ

address: Washington Road

department: Geosciences

institute: Princeton University

organism: seawater metagenome

manufacture_protocol:
1.The probe oligonucleotides are printed onto Corning Ultragaps or Erie Scientific Epoxy Silane slides using a DeRisi style arrayer (DiRisi et al., 1997) and pins from Parallel Synthesis.
2.The 70-mer oligo probes (Operon Technologies) were adjusted to a concentration of 0.05 mg ml-1 in 50% DMSO and were spotted on CMT-GAPS amino silane-coated glass slides (Corning, Corning, NY).
3. After printing, the slides were stored in the dark at room temperature under slight vacuum in a dessicator. They were UV irradiated before hybridization.


title: 065989 Arraystar Rat RefSeq Promoter Array

city: Rockville

organism: Rattus norvegicus

description:
Agilent-065989
RN4
Arraystar Rat 4x180 K RefSeq Promoter Microarrays are specifically designed for the unbias identification of epigenetic modifications and transcription factor binding sites within 15,987 mRNA promoter regions by using 60-mer tiling probes at approximately 205 bp spacing. In addition, our Rat RefSeq Promoter Array can also interrogate 310 miRNA promoters. Further, probes for positive, negative are included to facilitate experimental performance assessment.

15987 RefSeq gene promoters (from -1300 to +500 bp) & 310 miRNA promoters (host gene's promoter or from -50 kb to miRNA)


title: Agilent-064693 Streptomyces coelicolor array (Probe name version)

status: Public on May 10 2016

city: Beijing

first: Xiao

last: Li

address: NO.1 Beichen West Road, Chaoyang District

institute: Institute of Microbiology, Chinese Academy of Sciences

organism: Streptomyces coelicolor

description:
Agilent-064693 multiprobe_complete_46352p
Arrays of this design have barcodes that begin with 16064693 or 2564693.


title: Illumina HiSeq 2000 (Epiplatys dageti monroviae)

status: Public on May 09 2016

organism: Epiplatys dageti monroviae


title: Ion Torrent Proton (Bacillus subtilis subsp. subtilis str. 168)


title: Illumina HiSeq 2500 (Aplocheilus lineatus)

organism: Aplocheilus lineatus


title: Illumina HiSeq 2000 (Rivulus cylindraceus)

organism: Rivulus cylindraceus


title: Illumina HiSeq 2000 (Aphyosemion striatum)

organism: Iconisemion striatum


title: Illumina NextSeq 500 (Curvibacter sp. AEP1.3)

organism: Curvibacter sp. AEP1.3


title: Illumina HiSeq 2500 (Aphyosemion striatum)


title: 065939 Arraystar Mouse RefSeq Promoter Array

description:
Agilent-065939
MM9
Arraystar Mouse 4x180 K RefSeq Promoter Microarrays are specifically designed for the unbias identification of epigenetic modifications and transcription factor binding sites within 22,327 mRNA promoter regions by using 60-mer tiling probes at approximately 205 bp spacing. The probes for positive, negative are also included to facilitate experimental performance assessment.

22327 RefSeq gene promoters (from -1300 to +500 bp)


title: Illumina HiSeq 2500 (Xenopus tropicalis)

status: Public on May 16 2016

organism: Xenopus tropicalis


title: Illumina HiSeq 2000 (Nematolebias papilliferus)

organism: Nematolebias papilliferus


title: Illumina HiSeq 2000 (Xenopus tropicalis)


title: Agilent-033524 gallus_exp_microarray_SLagarrigue_8x60k_V0_fev2011

city: Nouzilly

first: Anne

last: Collin

address: UR83 Recherches Avicoles

institute: INRA

organism: Gallus gallus

description:
Arrays of this design have barcodes that begin with 253352410001_201109281039

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software."

The FeatureNum column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface)."

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions."


title: Illumina HiSeq 2000 (Callopanchax occidentalis)

organism: Callopanchax occidentalis


title: Illumina HiSeq 2000 (Austrofundulus leohoignei)

organism: Austrofundulus leohoignei


title: Agilent-045717 Phaeodactylum8x60k

city: Paris

first: Angela

last: Falciatore

address: 15 rue de l'ecole de Medicine

department: UMR 7238, LCQB

institute: CNRS

organism: Phaeodactylum tricornutum


title: [MTA-1_0] Affymetrix Mouse Transcriptome Array 1.0

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

organism: Mus musculus

description: This platform is a generic template for the submission of MTA-1_0 data.

manufacture_protocol: See manufacturer's website


title: Illumina NextSeq 500 (Aspergillus niger; Penicillium chrysogenum; Trichoderma reesei)

status: Public on May 06 2016

last: GEO

organism:
Aspergillus niger
Penicillium chrysogenum
Trichoderma reesei


title: Illumina NextSeq 500 (Aspergillus niger; Penicillium chrysogenum)

organism:
Aspergillus niger
Penicillium chrysogenum


title: Illumina Genome Analyzer II (Macropus eugenii)

organism: Notamacropus eugenii


title: Illumina HiSeq 2500 (Methanobrevibacter ruminantium)

organism: Methanobrevibacter ruminantium


title: 074301 Arraystar Human CircRNA microarray V2

status: Public on May 07 2016

organism: Homo sapiens


title: Illumina NextSeq 500 (Penicillium chrysogenum; Trichoderma reesei)

organism:
Penicillium chrysogenum
Trichoderma reesei


title: Illumina NextSeq 500 (Aspergillus niger; Trichoderma reesei)

organism:
Aspergillus niger
Trichoderma reesei


title: Illumina Genome Analyzer IIx (Solanum melongena)

organism: Solanum virginianum


title: Illumina NextSeq 500 (Trichoderma reesei)

organism: Trichoderma reesei


title: Illumina NextSeq 500 (Penicillium chrysogenum)

organism: Penicillium chrysogenum


title: SRAN Human 179 v1.0

city: Springfield

first: Sophia

last: Ran

state: IL

address: 801 N. Rutledge St.

department: MMICB

institute: Southern Illinois University - School of Medicine

description:
RT-qPCR assay
GoTaq Green Master Mix (Promega, WI)

manufacture_protocol: In-house human inflammatory RT-qPCR targeted array was constructed from known and putative cytokine and receptor genes associated with the promotion of tumor vasculature and breast cancer metastasis. We used an in-house array to analyze the gene expression of a total of 179 targets including 98 cytokines, 80 cytokine receptors and β-actin as the housekeeping gene.  An accession number based on CDS was identified for each gene of interest on the NCBI database (Bethesda, MD). Accession numbers were used to obtain potential primer sequences via the NIH qPrimerDepot (http://primerdepot.nci.nih.gov/) or Harvard Primerbank (http://pga.mgh.harvard.edu/primerbank/index.html). The sequence of each primer was compared against all known nucleotide sequences in the human genome using the NCBI BLAST alignment tool (http://blast.ncbi.nlm.nih.gov/Blast.cgi). Only primers that had unique specificity to the individual target gene were used for validation. Primer DNA oligos were ordered from Integrated DNA Technology (Coralville, IA). Each primer was validated using four dilutions (1, 1:10, 1:100, and 1:1000) of human universal cDNA tested in duplicate with a final primer concentration of 0.5µM. RT-qPCR was performed with GoTaq Green Master Mix (Promega, WI) on a MasterCycle realplex PCR machine (Eppendorf, NY). The quality of each primer was confirmed by melting curve analysis and the amplification efficiency by Ct slope analysis of the four cDNA dilutions. All primer sequences are listed with the normalized Ct values.


title: Agilent-048313 MTB.tiled.3.2013

status: Public on May 05 2016

city: Seattle

first: Shuyi

last: Ma

state: Washington

address: 1900 9th Avenue

department: Department of Pediatrics

institute: University of Washington

organism: Mycobacterium tuberculosis

description:
Tiled array covering all ORFs and all intergenic regions on both strands.

Arrays of this design have barcodes that begin with 16048313 or 2548313.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: AB 5500xl Genetic Analyzer (Shewanella sp. W3-18-1; Synechococcus sp. PCC 7002)

organism:
Picosynechococcus sp. PCC 7002
Shewanella sp. W3-18-1


title: Illumina NextSeq 500 (Streptomyces venezuelae ATCC 10712)

status: Public on May 04 2016

organism: Streptomyces venezuelae ATCC 10712


title: Illumina HiSeq 2000 (Tetranychus urticae)

organism: Tetranychus urticae


title: Agilent-029456 Kakinuma-1 Mus musculus (Feature Number version)

status: Public on May 03 2016

city: Inage-ku

first: Benjamin

middle: John

last: Blyth

state: Chiba

address: 4-9-1 Anagawa

department: Centre for Radiation Protection

institute: National Institute of Radiological Sciences


title: Illumina HiSeq 2500 (Candida glabrata; Saccharomyces cerevisiae)

status: Public on May 02 2016

organism:
Saccharomyces cerevisiae
Nakaseomyces glabratus


title: Illumina Hiseq 2000 (human blood metagenome)

organism: human blood metagenome


title: 24Sure Homo sapiens 10K BAC array

status: Public on May 01 2016

city: Leuven

first: Eftychia

last: Dimitriadou

address: Herestraat 49, ON1, bus 602

country: Belgium

institute: KU Leuven


title: 082778 Arraystar Rat CircRNA microarray V1

first: Panos

last: Pan

organism: Rattus norvegicus


title: UNSW Mouse RT-qPCR array (II)

city: UNSW, SYDNEY

first: Kenneth

middle: K

last: Hsu

state: NSW

address: Rm422, 4E, Wallace Wurth Bld,

department: School of Medical Sciences

country: Australia

institute: University of New South Wales

organism: Mus musculus

description:
The qPCR primers were designed using Primer3 web based software (Nucleic Acids Research 40(15):e115) or from PrimerBank ( Nucl. Acids Res. 2010 38:D792-9).
Each primer pair was tested on RT-qPCR with single distinctive melting curve and then run on agarose gel (2%) with a single bend of right predicted size.
Primer spotting and qPCR setting used  epMotion automated pipetting systems (Eppendorf International)


title: Agilent-019161 D. rerio (Zebrafish) Oligo Microarray 4x44K (V3)

city: Shanghai

first: Chengwen

last: Chen

address: No. 250 Bibo Road

institute: CHGC

organism: Danio rerio


title: Illumina HiSeq 2000 (Brassica napus; Leptosphaeria maculans)

status: Public on Feb 04 2016

organism:
Brassica napus
Plenodomus lingam


title: Affymetrix genome-wide platform Axiom CORECT Set (1.3 M SNPs and Indels)

city: St. John's

first: Guangju

last: Zhai

state: NL

address: 300 Prince Philip Drive

department: Genetics, Medicine

institute: Memorial University of Newfoundland

manufacture_protocol: see manufacturer's web site


title: In vitro proteomic expression changes in Ewing sarcoma cell lines after IGF-1R or IGF-1R/IR blockade

city: Houston

first: Joseph

middle: A.

last: Ludwig

state: Texas

department: Sarcoma Medical Oncology

institute: UT-MD-Anderson Cancer Center


title: In vivo proteomic expression changes in EW5 Ewing sarcoma xenografts after IGF-1R and/or mTOR blockade


title: UNSW Mouse RT-qPCR array (I)


title: Ion Torrent PGM (Rhodobacter capsulatus)

status: Public on Aug 04 2015

organism: Rhodobacter capsulatus


title: Illumina HiSeq 2500 (Streptomyces venezuelae ATCC 10712)


title: In vitro proteomic expression changes in Ewing sarcoma cell lines after mTOR blockade

organism: Homo sapiens


title: Agilent-034821 Pipas GS115 IAM2

status: Public on Apr 24 2015

city: Wien

first: Alexandra

middle: Bettina

last: Graf

address: Muthgasse 18

department: Applied Biotechnology

country: Austria

institute: University of Natural Resources and Life Sciences, Vienna

organism: Komagataella pastoris

description:
Arrays of this design have barcodes that begin with 16034821 or 2534821.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2500 (Pseudomonas aeruginosa PA14)

country: USA

organism: Pseudomonas aeruginosa PA14


title: Agilent-019714 mouse 244K custom CGH array

status: Public on Apr 10 2015

city: Memphis

first: Charles

middle: G

last: Mullighan

state: TN

address: 262 Danny Thomas Place

department: Pathology

institute: St Jude Children's Research Hospital


title: Illumina HiSeq 4000 (Oryza sativa Japonica Group)

organism: Oryza sativa Japonica Group


title: Illumina HiSeq 2000 (Oreochromis niloticus)

status: Public on Dec 01 2014

organism: Oreochromis niloticus


title: RT2 Profiler PCR Arrays Angiogenesis [PAHS-024Z]

status: Public on Jun 11 2015

city: Kumamoto

first: Naoki

last: Shimozono

institute: Kumamoto university

description: PCR assay


title: Leishmania donovani Gene Expression 8x15k Microarray - Genotypic Technology Private Limited (AMADID: 035638) (condensed)

status: Public on Dec 31 2013

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

organism: Leishmania donovani

description: Organism: Leishmania donovani, Microarray GeneExpression 8x15k designed by Genotypic Technology Private Limited. (AMADID: 035638)


title: Agilent-049615 Enchytraeus crypticus V2.0 44k

status: Public on Jan 01 2016

city: Aveiro

first: Susana

middle: Isabel Lopes

last: Gomes

address: Campus Universitário de Santiago, Departement of Biology, University of Aveiro

department: Biology

country: Portugal

institute: CESAM & University of Aveiro

organism: Enchytraeus crypticus

description:
This array still contains the original Enchytraeus crypticus transcriptome assembly but duplicates and non working singleton probes have been removed
Arrays of this design have barcodes that begin with 16049615 or 2549615.
The ID column represents the Agilent Feature Extraction feature number.


title: Agilent-028916 Mouse 8x60k CGH [ProbeName version]

status: Public on Jul 02 2013

city: Graz

first: Vendula

last: Svendova

address: Auenbruggerplatz 2

institute: Medical University Graz

description:
selected from 162k probe set extended by 1M chrY set

Arrays of this design have barcodes that begin with 16028916 or 2528916.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

relation: Alternative to: GPL21806 (Feature number version)


title: ARK-Genomics Bos taurus BRK1 17K v1.0

status: Public on Jun 04 2013

city: Castanet Tolosan

first: Rachel

last: Rupp

address: chemin de borde rouge

department: animal genetics

institute: INRA

organism: Bos taurus

description:
Holstein breed.
This is a bovine cDNA array containing 16275 elements printed in duplicate. Sequences on the array were selected from normalised cattle libraries. The array also contains a number of genes from sheep, and a number of immune function genes from cattle also found on the ARK-Genomics Bovine Macrophage Specific -BoMP- 5K array (A-MEXP-495).
ArrayExpress accession number A-MEXP-1592.

manufacture_protocol:
The clone-set was amplified in 96 well plates and re-arrayed into a 384-well Montage (Millipore) filtration plate to isolate the amplified DNA products. These products were checked by agarose gel electrophoresis and quantified using a Picogreen DNA quantitation assay. All single band PCR products were re-arrayed, in fresh barcoded 384 well pates (Genetix 7022), at a concentration of 150ng per microlitre in 0.1M sodium phosphate buffer pH 8 containing 0.01% SDS, ready for printing. All re-arraying was done with Multiprobe II (Perkin Elmer) liquid handling robot. DNA was printed onto aminosilane-coated glass slides (Corning GAPS II) using a Genomic Solutions MicroGrid II arrayer and the MicroSpot pins according to the manufacturer's instructions. All printing was carried out in conditions of constant humidity (52% RH) and temperature (20oC) in a room supplied with HEPA filtered air. Prior to printing the pins were cleaned by ultra-sonication in water and if necessary 50mM potassium hydroxide. A test print of all pins was carried out by printing Cy3 streptavidin conjugate dye in printing buffer onto poly lysine slides and printing 100 features per pin. When all pins are printing consistent size spots for more than 80 features, they were accepted as ready to print. The MicroGrid II was then programmed for the array print run, with a grid layout file prepared to allow duplicate printing at random within a patch. At the end of the print run the slides were removed following the program instructions in preparation for post processing. The slides are processed to bind the DNA to the slide, denature the DNA, and prevent non-specific binding during hybridisation. Slides were transferred from the printer into stainless steel slide staining racks before baking at 80oC for 4 hours in an oven. The slides were blocked after they had returned to room temperature. Blocking was carried out in a fume hood. Once in solution, the blocking agents do not remain active for long, so it is important to prepare fresh solutions and use them immediately. Dissolve 0.75g succinic anhydride completely in 125ml 1-methyl-2-pyrrolidinone. Immediately mix in 125ml of 0.2M boric acid pH 8.0. The slides were plunged into the solution and vigorously agitated for 15 minutes using a magnetic stirrer. The slides were then transferred to a stirred water bath containing MilliQ water maintained at 95 oC and plunged up and down and side to side for 2 minutes to denature the DNA to single strands. The slides were then transferred to a trough containing 96% ethanol for 1 minute. The slides were then transferred to microscope slide boxes and dried by centrifugation. Slides were then stored in a desiccator in the dark at room temperature until use.
spotted_ss_PCR_amplicon_features


title: Illumina HiSeq 2000 (Caenorhabditis brenneri)

status: Public on Oct 05 2012

last: GEO

organism: Caenorhabditis brenneri


title: Illumina HiSeq 2000 (Pristionchus pacificus)

status: Public on Oct 08 2012

organism: Pristionchus pacificus


title: Arraystar Mouse LncRNA microarray V3B (Agilent-055750 custom Probe Name version)

status: Public on Oct 11 2014

city: Rockville

state: MD

address: 9430 Key West Avenue

institute: Arraystar Inc.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-020109 Porcine Gene Expression Microarray (44K) (Feature number version)

status: Public on Dec 15 2014

city: Castanet tolosan

first: Laurence

last: Liaubet

department: Animal Genetic

organism: Sus scrofa


title: NimbleGen Mouse 27K 4C-H19ICR Enriched Loci

status: Public on Mar 28 2012

city: Stockholm

first: Rolf

last: Ohlsson

address: Solnavägen 30, 171 64

department: Department of Oncology-Pathology

country: Sweden

institute: Karolinska Institutet

description:
MM9
2006-05-22_MM6_custom_50mer_ChIP

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Illumina HiSeq 2000 (Caenorhabditis briggsae)

status: Public on Oct 10 2012

organism: Caenorhabditis briggsae


title: Agilent-034821 Pipas GS115 IAM2 [Probe Name version]

status: Public on May 03 2016

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description:
Arrays of this design have barcodes that begin with 16034821 or 2534821.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe names.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 1000 (Arabidopsis thaliana)

status: Public on Jun 19 2013

organism: Arabidopsis thaliana


title: Schizosaccharomyces pombe transcriptome slide 2

status: Public on Jun 30 2008

city: Salt Lake City

first: Timothy

middle: J

last: Parnell

state: UT

address: 2000 Circle of Hope

institute: Huntsman Cancer Institute

organism: Schizosaccharomyces pombe

description: The Schizosaccharomyces pombe transcriptome microarray is a custom designed genomic tiling array to map RNA transcripts across the entire genome. The array was designed by tiling 60mer oligo probes every 55 nucleotides (5 nucleotide overlap) across the genome. The reverse complement of every probe was also generated. Probes were generated from sequences representing both nuclear and mitochondrial genomes. Sequences from the mating locus (noted as chromosome Mat) were also included. Chromosomal contig sequences from the Sanger Institute dated February 2007 were used as source. The mating locus sequence was assembled from various sources. Oligo probes with strong hybridization signals from a zebra fish promoter tiling array were also included as non-hybridization controls. The array was designed for two 244K slides. The Agilent Design ID is 015049.

first: Brad

middle: R

last: Cairns


title: NimlbeGen C. albicans HX3 tiling array [091120_Candida19_CSU_ASU]

status: Public on May 27 2010

city: Rochester

first: Elena

last: Rustchenko

state: NY

address: 601 Elmwood Ave., Box 712

department: Biochemistry & Biophysics

institute: University of Rochester

organism: Candida albicans

description:
710,907 probes
Candida albicans genomic sequence from the assembly 19.
C. albicans sequence is available at Candida Genome Database http://www.candidagenome.org

manufacture_protocol: Tiling probes were in-situ synthersized 50-mers with an average probe spacing of 35 bp on each strand. The design was tiled in an unbiased fashion across the entire genome. Empty features on the array were filled with randomly generated probes that had G+C content and length comparable to the C. albicans probes.


title: Schizosaccharomyces pombe transcriptome slide 1

description: The Schizosaccharomyces pombe transcriptome microarray is a custom designed genomic tiling array to map RNA transcripts across the entire genome. The array was designed by tiling 60mer oligo probes every 55 nucleotides (5 nucleotide overlap) across the genome. The reverse complement of every probe was also generated. Probes were generated from sequences representing both nuclear and mitochondrial genomes. Sequences from the mating locus (noted as chromosome Mat) were also included. Chromosomal contig sequences from the Sanger Institute dated February 2007 were used as source. The mating locus sequence was assembled from various sources. Oligo probes with strong hybridization signals from a zebra fish promoter tiling array were also included as non-hybridization controls. The array was designed for two 244K slides. The Agilent Design ID is 015048.


title: Agilent-067406 Human CBC lncRNA + mRNA microarray V4.0 (Probe name version)

status: Public on Oct 15 2015

city: Beijing

first: Hao

last: Li

address: No.6 Tiantanxili

department: Department of Neurosurgery

institute: Beijing Tiantan Hospital, Capital Medical University

manufacture_protocol: Manufacture protocol to see manufacturer's website


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [CDF: hugene20st_Hs_ENTREZG.cdf, Brainarray version 19.0.0]

status: Public on Apr 24 2015

description: This array is identical to GPL16686 but the data were analyzed with a custom CDF environment.

relation: Alternative to: GPL16686 (Alternative CDF [official])

manufacture_protocol: See manufacturer's web site.


title: Schizosaccharomyces pombe 44K tiling array

description: The Schizosaccharomyces pombe tiling microarray was designed for ChIP microarray. Probes were tiled ~290 bp across the genome, including centromeric heterochromatin. Sequences from the mating locus (noted as chromosome Mat) were also included. The array was designed for Agilent 44K slides.

first: Mat

last: Gordon


title: nCounter Human miRNA Expression Assay, V2

status: Public on Dec 30 2013

city: Seattle

first: Lucas

last: Dennis

state: WA

address: 530 Fairview Ave N

institute: NanoString Technologies


title: NimbleGen Drosophila melanogaster 12X135K Gene Expression Array [100718_Dmel_exp]

status: Public on Jul 06 2012

city: Madison

first: Inc

last: Nimblegen Systems

state: WI

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

organism: Drosophila melanogaster

description:
Drosophila melanogaster DM5.7 build and having 60 basepair probes with target genes 16637 with 8 probes per gene ( one pair for replicates ) per each array

DesignID: 535513

native array description file:100718_Dmel_exp.ngd
native array description file:100718_Dmel_exp.ndf
native array description file:100718_Dmel_exp_HX12.ncd


title: AB SOLiD 4 System (Homo sapiens)

status: Public on Apr 08 2011


title: Exiqon miRCURY LNA™ microRNA Array - hsa, mmu & rno

status: Public on May 01 2013

organism: synthetic construct

manufacture_protocol: Exiqon's miRCURY LNA™ microRNA Array system is a complete system for global microRNA expression profiling. The system is based on the LNA™-technology, which offers unique advantages in the specific and sensitive detection of short RNA sequences.


title: miRCURY LNA microRNA Array, v.11.0 - hsa, mmu & rno

status: Public on Dec 19 2008

city: Vedbaek

first: Exiqon

last: A/S

address: Bygstubben 9

country: Denmark

institute: Exiqon A/S

organism:
Homo sapiens
Mus musculus
Rattus norvegicus
Human alphaherpesvirus 1
Human betaherpesvirus 5
Murid betaherpesvirus 1
human gammaherpesvirus 4
JC polyomavirus
Human immunodeficiency virus 1
Murid gammaherpesvirus 4
Human gammaherpesvirus 8
Betapolyomavirus hominis
Betapolyomavirus macacae

description:
Array covering Sanger miRBase 12.0 and Exiqon miRPlus mature miRNAs.
The platform information provided is from the time of the design.
Names, accession numbers and sequences are listed for mature miRNAs in miRBase 12.0. Some probes may target multiple miRNAs, in which case multiple miRNA names, accession numbers and sequences are listed separated by '/'

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 2000 (Caenorhabditis remanei)

status: Public on Oct 05 2012

organism: Caenorhabditis remanei


title: miRCURY LNA microRNA Array, 6th generation - hsa, mmu & rno

status: Public on Jan 13 2011

organism:
Homo sapiens
Mus musculus
Rattus norvegicus
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Human betaherpesvirus 5
Murid betaherpesvirus 1
human gammaherpesvirus 4
JC polyomavirus
Human immunodeficiency virus 1
Murid gammaherpesvirus 4
Human gammaherpesvirus 8
Merkel cell polyomavirus
Mus musculus cytomegalovirus 2
Betapolyomavirus hominis
Betapolyomavirus macacae

description:
Array covering Sanger miRBase 16.0 and Exiqon miRPlus mature miRNAs.

The platform information provided is from the time of the design.

Names, accession numbers and sequences are listed for mature miRNAs in miRBase 16.0. Some probes may target multiple miRNAs, in which case multiple miRNA names, accession numbers and sequences are listed separated by '/'


title: GeneChip® PrimeView™ Human Gene Expression Array (with External spike-in RNAs)

status: Public on Oct 24 2012

city: Cambridge

first: Richard

middle: A

last: Young

state: MA

address: 9 Cambridge Center

institute: Whitehead Institute for Biomedical Research

organism: Homo sapiens

manufacture_protocol: See details from Affymetrix. This is a commercially available chip.