title: DrosophilaWhiteLabJuly2001

status: Public on Jan 31 2003

city: Cambridge

first: Scott

middle: A

last: Rifkin

state: MA

address: 16 Divinity Ave

department: OEB

country: USA

institute: Harvard University

organism: Drosophila melanogaster

technology: spotted DNA/cDNA

description: Format from July 2001 arrays, sans TP

distribution: non-commercial


title: NCI Glycoarray-411

status: Public on Dec 13 2016

city: Frederick

first: Jeff

last: Gildersleeve

state: MD

address: 376 Boyles St.

institute: National Cancer Institute

organism:
Quercus alba
Gossypium hirsutum
Trypanosoma cruzi
Pandalus borealis
Oncorhynchus nerka
Gallus gallus
Homo sapiens
Bos taurus
Ovis aries
Oryctolagus cuniculus
Mus musculus
Human immunodeficiency virus 1
Ceratonia siliqua
Megathura crenulata
Bothrops moojeni
Frangula alnus
Senegalia senegal
Pachymenia carnosa
Dermestes lardarius

technology: spotted peptide or protein

description:
spotted glycoproteins and neoglycoproteins
Each slide contains 16 identical array containing 411 components printed in duplicate (822 features total)

manufacturer: National Cancer Institute, Chemical Glycobiology Section

manufacture_protocol: Glycoproteins and neoglycoproteins spotted onto epoxide functionalized glass slides (ArrayIt SMP2) using a MicroGrid II arrayer.


title: miRFishes_20_LCB_131125-F

status: Public on Jun 30 2016

city: Guangzhou City

first: Zhang

last: Xiujuan

state: Guangdong Province

address: 105 Xingang West Road, Haizhu District

country: China

institute: Guangdong Entomological Institute

organism: Acipenser sturio

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.


title: Eurogentec J090F Yeast ORFs

city: Montpellier

first: Bruno

last: Blondin

address: 2 place Pierre Viala

country: France

institute: INRA

organism: Saccharomyces cerevisiae S288C

manufacture_protocol: Catalog number: AR-SCGS-1. Spotted DNA/cDNA, The yeast 5803 ORFs MicroArray is composed of 32 subgrids, which follow a pattern of 8 metarows and 4 metacolumns. Each subgrid contains 20 columns and 20 rows with a dot spacing of 200 µm. Probes are spotted as closed duplicates. In order to provide a friendly environment, the first subgrid row on each array metarow contains all the normalization controls, which include the controls with serial dilution of the Renilla LuxA cDNA PCR product. In addition to this control, four serial dilutions of the sonicated yeast S288c genomic DNA are also located in the corner subgrids of the MicroArray.


status: Public on Jun 28 2016

city: Mexico DF

first: Gabriel

last: Del Rio

state: DF

address: Circuito exterior s/n, Delegacion Coyacan

department: Biochemistry and Structural Biology

country: Mexico

institute: Instituto de Fisiologia Celular, UNAM

organism: Saccharomyces cerevisiae

technology: spotted oligonucleotide

manufacture_protocol: Yeast 50-mer oligo library from MWGBiotech Oligo Sets (http:/www.mwgbiotech.com) were resuspended to 40μM in Micro Spotting solution (Telechem International Inc.). SuperAmine coated slides 25x75 mm (TeleChem International INC) were printed in duplicate, and fixed at 80°C for 4 hours. For pre-hybridization the slides were re-hydrated with water vapor at 60°C, and fixed with two cycles of UV light (1200J). After boiling for two minutes at 92°C, slides were washed with 95% ethanol for one minute and prehybridzed in 5X SSC, 0.1% SDS and 1% BSA for one hour at 42°C .The slides were washed and dried for further hybridization.


title: Illumina HiSeq 2000 (Cenococcum geophilum)

last: GEO

organism: Cenococcum geophilum

technology: high-throughput sequencing

distribution: virtual


title: Illumina MiSeq (Cyanidioschyzon merolae)

organism: Cyanidioschyzon merolae


title: Agilent-072598 Bovine_cusotm8x15K [Feature Number]

status: Public on Jun 29 2016

city: Morioka

first: Keiichiro

last: Kizaki

state: Iwate

department: Vet. Med.

country: Japan

institute: Iwate University

organism: Bos taurus

description:
Arrays of this design have barcodes that begin with 16072598 or 2572598.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-027382 Danio_Rerio_TF_V2 [Probe Name version]

status: Public on Aug 26 2016

city: Syracuse

first: Samantha

middle: Jane

last: England

state: NY

address: 107 College Place

department: Biology

institute: Syracuse University

organism: Danio rerio

description: Arrays of this design have barcodes that begin with 16027382 or 2527382.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: NIVA DM 60k microarray V1

city: Oslo

first: Knut Erik

last: Tollefsen

address: Gaustadallèen 21

country: Norway

institute: Norwegian Institute for Water Research (NIVA)

organism: Daphnia magna


title: Illumina HiSeq 2000 (Monomorium pharaonis)

organism: Monomorium pharaonis


title: Illumina MiSeq (Sclerotinia sclerotiorum)

organism: Sclerotinia sclerotiorum


title: Illumina MiSeq (Brassica napus; Sclerotinia sclerotiorum)

organism:
Brassica napus
Sclerotinia sclerotiorum


title: QuantStudio™ 12K Flex Real-Time PCR System, OpenArray™ block and  Mice Custom TaqMan OpenArray Real-Time PCR Plates

city: La Laguna

first: Emma

last: Carmelo

state: SANTA CRUZ DE TENERIFE

address: C/ Astrofisico Francisco Sanchez s/n, Campus de Anchieta

department: University Institute of Tropical Diseases and Public Health

country: Spain

institute: University of La Laguna

organism: Mus musculus

technology: RT-PCR

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 2000 (Pogonatum aloides)

status: Public on Jun 27 2016

organism: Pogonatum aloides


title: Illumina NextSeq 500 (Chlorocebus aethiops)

organism: Chlorocebus aethiops


title: Illumina HiSeq 4000 (Andrographis paniculata)

organism: Andrographis paniculata


title: Gene UP/Northwest A&F University Goat S-Poly(T) miRNA assay

status: Public on Jun 25 2016

city: Xi'an

first: Zhi

last: Chen

state: Select a State or Province

address: 22 Xinong Road, Yangling

department: Shaanxi Key Laboratory of Molecular Biology for Agriculture

institute: College of Animal Science and Technology, Northwest A&F University,  China

organism: Capra hircus

description:
PCR assay
Bio-Rad CFX96 real-time PCR detection system (Bio-Rad, USA)


title: Human HS29K array

status: Public on Jun 23 2016

city: Silver Spring

first: Salaheldin

middle: Sobhi

last: Hamed

state: Maryland

address: 10903 New Hampshire Ave

department: CDER/OTR

institute: U.S. FDA

organism: Homo sapiens


title: Agilent-063122 Oncorhynchus mykiss 8 X 60k custom array (Probe Name version)

city: St Pee sur nivelle

first: Inge

last: Geurden

address: Quartier Ibarron

department: PHASE

organism: Oncorhynchus mykiss


title: Agilent-031918 Custom Helicobacter pylori 26695 uid57787 Expression Microarray

city: Shanghai

first: kangchen

last: bio

state: Shanghai

address: 421Hong Cao Rd.

institute: KangChen Bio-tech

organism: Helicobacter pylori 26695

description:
Agilent-031918
Helicobacter pylori 26695 uid57787

The Helicobacter pylori 26695 Microarray is a broad view that represents well-known and predicted Helicobacter pylori 26695 genes and transcripts. Coupled with NCBI’s gene prediction processes and Agilent's probe selection, this design delivers increased data quality and less gene coverage redundancy.
* Total 1610 genes represented, all with public annotations.
* Each gene has 3 probes, every probe have 3 replications.
* Sequence content sourced from NCBI BioProject PRJNA57787.
* ALL of the represented probes are designed by Agilent's eArray.
* Sequence orientation, accuracy, and clustering assembly classification validated with Helicobacter pylori 26695.
* 8 X 15K slide formats printed using Agilent's 60-mer SurePrint technology.

manufacture_protocol: Aee manufacturer's web site at: http://www.agilent.com/


title: MRC Toxicology Unit-Mus musculus-miRCURY LNA f version 8.0 of miRBase (Exiqon)

status: Public on Jun 24 2016

city: Didcot

middle: Louise

last: Marczylo

state: Oxfordshire

address: Harwell Campus, Chilton

department: Toxicology

country: United Kingdom

institute: Public Health England

description: MRC Toxicology Unit-Mus musculus-miRCURY LNA probe set probe set providing complete coverage of version 8.0 of miRBase (Exiqon)

manufacturer: MRC Toxicology Unit, Systems Toxicology Group

manufacture_protocol: Probes were supplied dried down in 384 well plates and were resuspended to 20 µM in 3X SSC, 1.5 M Betaine, 30% (v/v) ethylene glycol prior to printing. Plates were loaded onto an ArrayJet microarrayer for printing onto Genetix aldehyde plus slides. Each probe was printed 4 times. The layout of the print was over 3 blocks, each one consisting of 32 columns and 36 rows, with a total of 12 blocks representing n=4 of each probe.


title: Agilent-071899 Ustilago maydis and maize custom array 069384

city: Vienna

first: Armin

last: Djamei

address: Dr. Bohr-Gasse 3

country: Austria

institute: Gregor Mendel Institute of Molecular Plant Biology GmbH

organism:
Zea mays
Mycosarcoma maydis

description:
U. maydis orfs (sense and antisense), Zea mays agilent chip, constitutive gene control group of U. maydis, 26 genes replicated

Arrays of this design have barcodes that begin with 16071899 or 2571899.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NimbleGen Chicken 37K

city: Linköping

first: Mohammad

last: Atikuzzaman

address: Linköping

department: Clinical and Experimental Medicine

country: Sweden

institute: Linköping University

organism: Gallus gallus

manufacture_protocol: see manufacturer's web site


title: Agilent-042341 Saccharopolyspora erythraea SACE_v1

status: Public on Jun 22 2016

city: Ljubljana

first: Spela

last: Baebler

address: Vecna pot 111

department: Department of Biotechnology and Systems Biology

country: Slovenia

institute: National Institute of Biology

organism: Saccharopolyspora erythraea

description:
Saccharopolyspora erythraea transcriptome array (UniCam sequence + SNP info)
Arrays of this design have barcodes that begin with 16042341 or 2542341.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents ORF/ACCESSION_STRING
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

first: Špela

first: Marko

last: Petek


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 (probesets grouped by R EventPointer package)

status: Public on Jun 21 2016

city: Pleasanton

first: Juan

middle: Pablo

last: Romero

state: CA

address: 6230 Stoneridge Mall Rd

department: Computational Biology

institute: 10x Genomics

description: Affymetrix HTA_2,0 with probsets grouped by alternative splicing events identifiable with the array. Each event is divided into the 3 paths used by EventPointer algorithm


title: CAB-MEL-LfeRT32a-14000-V2

city: Torrejón de Ardoz

first: Mercedes

last: Moreno

state: Madrid

address: Crta. de Ajalvir, km 4

institute: Centro de Astrobiología

organism: Leptospirillum ferrooxidans

manufacturer: Molecular Ecology laboratory at Centro de Astrobiología

manufacture_protocol:
1. A random genomic library from Leptospirillum ferrooxidans RT32a was created as described in Parro V. and Moreno-Paz M. (PNAS, 100(13):7883-7888).
2. Clone fragments were amplified by PCR and purified with a PCR Microarray Purification Kit for 96-Well and 50 µl PCR samples (Arrayit Corporation).
3. Purified PCR products were dried in a Universal Vacuum System Plus UVS400A (Savant) and resuspended in 15ul of water. After resuspension, 15ul of 2x Spotting Solution Plus (Arrayit Corporation) was added into 384-V-bottom plates from Genetix (cat# X6004).
4. 15ul aliquots were dispensed into 384-V-bottom plates from Genetix (cat# X6004) with the Epmotion 5075vac system (Eppendorf)
5. Plates were shaked near maximum rotational speed on flat-bed shaker for 5 minutes.
6. Plates were centrifugated at 2000 rpm for 3 minutes.
7. Plates were placed in the appropriate location of plate cassette before printing run.
8. After run, plates were sealed with cover plates and maintained in -20ºC.


title: HuProt™ Arrays

city: Mumbai

first: Sanjeeva

last: Srivastava

address: Powai

department: Department of Biosciences and Bioengineering

country: India

institute: Indian Institute of Technology Bombay

manufacture_protocol: Proteins expressed in yeast as GST fusions


title: Illumina NextSeq 500 (Aedes atropalpus)

status: Public on Jun 20 2016

last: GEO

organism: Aedes atropalpus


title: Illumina HiSeq 2500 (Human immunodeficiency virus 1)

organism: Human immunodeficiency virus 1


title: Illumina NextSeq 500 (Toxorhynchites amboinensis)

status: Public on Jun 17 2016

organism: Toxorhynchites amboinensis


title: Illumina NextSeq 500 (Reticulitermes virginicus)

organism: Reticulitermes virginicus


title: Illumina NextSeq 500 (Harpegnathos saltator)

organism: Harpegnathos saltator


title: Agilent-072598 Bovine_cusotm8x15K [Agilent Probe version]

last: Kizaki

organism: Bos taurus


title: Illumina HiSeq 4000 (Caulobacter vibrioides)

organism: Caulobacter vibrioides


title: Illumina NextSeq 500 (Reticulitermes flavipes)

organism: Reticulitermes flavipes


title: Agilent-031945 human miRNA 14 027233

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description:
Arrays of this design have barcodes that begin with 16031945 or 2531945.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Pyractomena borealis)

organism: Pyractomena borealis


title: Illumina NextSeq 500 (Polistes carolina)

organism: Polistes carolina


title: Illumina NextSeq 500 (Periplaneta americana)

organism: Periplaneta americana


title: Illumina HiSeq 2000 (Mesembryanthemum crystallinum)

organism: Mesembryanthemum crystallinum


title: Illumina NextSeq 500 (Pemphigus populicaulis)

organism: Pemphigus populicaulis


title: Illumina NextSeq 500 (Pemphigus populitransversus)

organism: Pemphigus populitransversus


title: Illumina NextSeq 500 (Microplitis mediator)

organism: Microplitis mediator


title: Illumina NextSeq 500 (Pemphigus obesinymphae)

organism: Pemphigus obesinymphae


title: Illumina MiSeq (Nicotiana benthamiana)

organism: Nicotiana benthamiana


title: Illumina NextSeq 500 (Heliothis virescens)

organism: Heliothis virescens


title: Illumina HiSeq 2500 (Hordeum vulgare)

organism: Hordeum vulgare


title: Illumina NextSeq 500 (Helicoverpa zea)

organism: Helicoverpa zea


title: Illumina NextSeq 500 (Cryptocercus garciai)

organism: Cryptocercus garciai


title: Illumina NextSeq 500 (Copidosoma floridanum)

organism: Copidosoma floridanum


title: Illumina NextSeq 500 (Microplitis demolitor)

organism: Microplitis demolitor


title: Illumina NextSeq 500 (Rhyparobia maderae)

organism: Rhyparobia maderae


title: Illumina NextSeq 500 (Culex quinquefasciatus)

organism: Culex quinquefasciatus


title: Illumina NextSeq 500 (Chrysodeixis includens)

organism: Chrysodeixis includens


title: Illumina NextSeq 500 (Aphis craccivora)

organism: Aphis craccivora


title: Illumina NextSeq 500 (Blattella asahinai)

organism: Blattella asahinai


title: Illumina NextSeq 500 (Aphidius ervi)

organism: Aphidius ervi


title: Illumina NextSeq 500 (Blattella germanica)

organism: Blattella germanica


title: Illumina NextSeq 500 (Anastrepha suspensa)

organism: Anastrepha suspensa


title: Illumina NextSeq 500 (Aedes albopictus)

organism: Aedes albopictus


title: Broad Institute Human L1000 landmark

city: Cambridge

first: Jesse

middle: S.

last: Boehm

address: 415 Main Street

institute: Broad Institute

organism: Homo sapiens

technology: oligonucleotide beads

description: L1000 is a high-throughput gene-expression assay based on the direct measurement of a reduced representation of the transcriptome and computational inference of the portion of the transcriptome not explicitly measured. The epsilon version of the assay measures 978 Landmark genes and 80 control genes. These direct measurements are combined with a statistical model to infer additional mRNA expression levels for a total of 22,268 features. Only landmark genes are given

first: Angela

middle: N

last: Brooks

middle: S

manufacture_protocol: L1000 is a high-throughput gene-expression assay that combines locus-specific ligation-mediated amplification with an optically addressed microsphere and flow cytometric detection system from Luminex Inc. to measure selected mRNA transcripts.


title: [hjay.1sq ] Affymetrix GeneChip Human HJAY Array

manufacture_protocol: See manufacturers website


title: Illumina NextSeq 500 (Acyrthosiphon pisum)

organism: Acyrthosiphon pisum


title: Illumina HiSeq 2000 (Agropyron mongolicum)

status: Public on Jun 16 2016

organism: Agropyron mongolicum


title: Illumina HiSeq 2500 (Drosophila miranda)

organism: Drosophila miranda


title: S. cerevisiae 120807_SCer_Dwolbach_CGH

city: Madison

first: Aseem

last: Ansari

state: WI

address: 440 Henry Mall

department: Biochemistry and The Genome Center

institute: University of Wisconsin-Madison

organism: Saccharomyces cerevisiae

description: Data table header descriptions PROBE_ID: unique identifier; SEQUENCE: nucleotide sequence of probe; Chromosome: Chromosome on which the probe sequence lies; X/Y: physical column/row number on the microarray;

manufacture_protocol: Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html


title: S. cerevisiae 2006-10-12_Ansari_tiling_51mer


title: Illumina HiSeq 2000 (Vibrio sp. PID23_8)

status: Public on Jun 15 2016

organism: Vibrio sp. PID23_8


title: Illumina HiSeq 2000 (Vibrio sp. PID17_43)

organism: Vibrio sp. PID17_43


title: Illumina HiSeq 2000 (Botrytis paeoniae)

status: Public on Jun 13 2016

organism: Botrytis paeoniae


title: Illumina MiSeq (Leishmania donovani)

organism: Leishmania donovani


title: Illumina HiScanSQ (Equus caballus)

organism: Equus caballus


title: AB 5500 Genetic Analyzer (Arabidopsis thaliana)

status: Public on Jun 14 2016

organism: Arabidopsis thaliana


title: Illumina MiSeq (Leishmania major)

organism: Leishmania major


title: Illumina NextSeq 500 (Anopheles gambiae)

organism: Anopheles gambiae


title: Illumina HiSeq 2500 (Blumeria graminis f. sp. hordei)

status: Public on Jun 10 2016

organism: Blumeria hordei


title: Illumina NextSeq 500 (Neisseria gonorrhoeae)

organism: Neisseria gonorrhoeae


title: Illumina Genome Analyzer IIx (Aspergillus oryzae)

status: Public on Jun 09 2016

organism: Aspergillus oryzae


title: Illumina MiSeq (Blattella germanica)

organism: Blattella germanica


title: Agilent-024416 human_miRNA_v13 [miRBase release 13.0 miRNA ID version]

status: Public on Jun 08 2016

city: Duesseldorf

first: Antje

last: Lindecke

address: Universitaetsstr. 1

department: BMFZ

country: Germany

institute: Universitaet Duesseldorf

organism: Homo sapiens

description:
Arrays of this design have barcodes that begin with 16024416 or 2524416.
Grid Date: 29-Jun-2009 (corresponding to miRBase release 13.0)


title: Illumina HiSeq 2000 (Streptomyces albus)

organism: Streptomyces albus


title: Illumina HiSeq 2500 (Prunus persica)

organism: Prunus persica


title: Illumina MiSeq (Burkholderia thailandensis)

organism: Burkholderia thailandensis


title: Illumina HiSeq 2000 (Botrytis cinerea)

organism: Botrytis cinerea


title: [HG-U133_Plus_2] GeneNet Human 216K lentiviral shRNA Library

city: Columbia

first: Jing

last: Fang

state: SC

address: 715 Sumter Street

department: Drug Discovery and Biomedical Sciences

institute: University of South Carolina

description: Human Genome U133 Plus 2.0 GeneChip arrays were scanned using the Affymetrix GeneChip Scanner 3000 7G. GeneNet Library Data Analysis Software (System Biosciences) was used to generate expression values for individual shRNAs by comparing the background-corrected and normalized signal values for each shRNA in LEN-treated and control samples. Annotation can be found in H50_no_x_lib.dat file.


title: Aspergillus fumigatus AF293

status: Public on Jun 11 2016

city: Daejeon

first: Kwang-Soo

last: Shin

department: Life Science

country: South Korea

institute: Daejeon University

organism: Aspergillus fumigatus Af293

manufacture_protocol: ss-DNA is synthesized in situ on glass substrates functionalized with amines. The synthesis process is proprietary but uses digital micromirror mediated photolithography to generate sufficient acid locally to remove acid labile protecting groups on 5'-terminal phosphoramidite monomers where the next phosphoramidite base will be coupled. The arrays can be used to hybridize cRNA or cDNA


title: Nanostring proprietary Lymphocyte specific gene code-set

city: houston

first: sourindra

last: maiti

state: texas

address: 7455 Fannin Street

department: Pediatrics

institute: M.D. Anderson Cancer Center

technology: other

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina HiSeq 2500 (Trametes sanguinea)

status: Public on Jun 07 2016

organism: Trametes sanguinea


title: Illumina HiSeq 2500 (Mycobacterium marinum)

organism: Mycobacterium marinum


title: Illumina HiSeq 2500 (Trametes cinnabarina)

organism: Trametes cinnabarina


title: Illumina HiSeq 2500 (Manihot esculenta)

status: Public on Jun 06 2016

organism: Manihot esculenta


title: Illumina NextSeq 500 (Aedes aegypti)

organism: Aedes aegypti


title: Agilent-021889 Mucor_best_transcripts_1_0

city: Murcia

first: Victoriano

last: Garre

state: Murcia

address: Facultad de Biología. Campus de Espinardo

department: Genetics and Microbiology

institute: University of Murcia

organism: Mucor circinelloides

description:
Mucor best transcripts v1.0 more models of fixed provisional ExtB ESTs, but groups of genes that we use in the lab and related KOG and KEGG

Arrays of this design have barcodes that begin with 16021889 or 2521889.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2000 (Homo sapiens; Influenza A virus)

status: Public on Jun 03 2016

organism:
Homo sapiens
Influenza A virus


title: Illumina NextSeq 500 (Eublaberus posticus)

organism: Eublaberus posticus


title: Ion Torrent PGM (Homo sapiens; Vesicular stomatitis virus)

organism:
Homo sapiens
Vesicular stomatitis virus


title: LC Sciences Macrobrachium nipponense LCB_D140423

status: Public on Jun 01 2016

city: Wuxi

first: sun

last: shengming

state: Jiangsu

address: No.9, Shanshui Rd East

institute: Freshwater Fisheries Research Center (FFRC) of Chinese Academy of Fishery Sciences (CAFS),

organism: Macrobrachium nipponense

manufacture_protocol: Gao, X., Gulari, E., and Zhou, X. (2004) In situ synthesis of oligonucleotide microarrays. Biopolymers 73, 579-596; (b) Zhu, Q., Hong, A., Sheng, N., Zhang, X., Jun, K.-Y., Srivannavit, O., Gulari, E., Gao, X., and Zhou, X. (2007) Microfluidic biochip for nucleic acid and protein analysis. in Methods Mol. Biol. Ed. Rampal, J. B. 382:287-312.;Bolstad, B. M., Irizarry, R. A., Astrandand, M., Speed, T. P. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinfo. 19, 185-193.


title: Hevea brasiliensis latex EST-based cDNA microarray

city: Danzhou

first: Zhiyi

last: Nie

state: Hainan

address: Baodao New Village

department: Rubber Research Institute

institute: Chinese Academy of Tropical Agricultural Sciences

organism: Hevea brasiliensis

manufacture_protocol: as described in CapitalBio Corporation Manual


title: [HT_MG-430_PM] Affymetrix HT MG-430 PM Array Plate [CDF: HTMG430PM_Mm_ENST_20]

state: MD

organism: Mus musculus

description: This Platform is identical to GPL11180 but a custom CDF environment was used to extract data.

manufacture_protocol: See manufacturer's web site.


title: Agilent-026777 Arraystar hg19 Human piRNA array

status: Public on Jun 04 2016

city: New Haven

first: Yong

last: Zhu

state: Connecticut

address: 60 College St

institute: Yale School of Public Health

organism: Homo sapiens

distribution: commercial

manufacture_protocol: The Arraystar HG19 piRNA array is designed for profiling of piRNAs in human germ cells. Human piRNAs are downloaded from NCBI database, and mapped to the HG19 genome sequence using UCSC Blat. piRNAs with good match are selected and on this array probes of about 23000 piRNAs are designed successfully using a duplex method. Most of the probes are replicated twice and the rest probes are printed once.


title: Illumina HiSeq 2000 (Haloferax volcanii DS2)

status: Public on Jun 02 2016

organism: Haloferax volcanii DS2


title: Illumina HiSeq 4000 (Dunaliella tertiolecta UTEX 'LB 999')

organism: Dunaliella tertiolecta UTEX 'LB 999'


title: Illumina HiSeq 2500 (Parhyale hawaiensis)

organism: Parhyale hawaiensis


title: OpArray Human 35K

city: Hilden

first: Folkert

last: Steinhagen

address: Breddert 37

institute: National Cancer Institute

manufacture_protocol: See manufacturer's website: http://www.microarrays.com


title: Illumina HiSeq 4000 (Glycine max)

organism: Glycine max


title: Agilent-042963 Fcandida 4x44k [Feature Number Version]

city: Amsterdam

first: Guangquan

last: Chen

address: boelelaan 1085

department: Animal ecology

country: Netherlands

institute: Vrije Universiteit

organism: Folsomia candida

description:
Folsomia_candida-4x44k_03112015

Arrays of this design have barcodes that begin with 2542963

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-061379 Custom Mycobacterium Leprae, 2x400K designed by Genotypic Technology Private Limited. (AMADID: 061379)

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

organism: Mycobacterium leprae


title: Nucleic Acid Programmable Protein Array (NAPPA) Somatic p53 Mutations

city: Tempe

first: Benjamin

last: Katchman

state: AZ

address: 727 E. Tyler St.

institute: Arizona State University


title: Illumina HiSeq 2000 (Hordeum vulgare)

last: GEO

organism: Hordeum vulgare


title: Agilent-028279 Rat 8X60K Custom Expression Array (Gene symbol version)

organism: Rattus norvegicus

description: Agilent Custom Rat Gene Expression 8X60K (AMADID: 28279) designed by Genotypic Technology Private Limited


title: Agilent-031945 human_miRNA_v14 [miRBase release 16.0 miRNA ID version]

status: Public on Sep 14 2013

city: Jinan

first: Fan

last: Jiang

state: Shandong

address: 107 Wen Hua Xi Road

institute: Shandong University

description:
Arrays of this design have barcodes that begin with 16031945 or 2531945.

The ID column represents miRNA_ID

Grid Date: 28-Dec-2010 (corresponding to miRBase release 16.0)


title: Illumina HiSeq 2500 (Gasterosteus aculeatus)

organism: Gasterosteus aculeatus


title: NimbleGen - Botrytis cinerea - 12*72K [121204_INRA_Botrytis_exp]

city: Palaiseau

first: Adeline

last: SIMON

address: 22 place de l'agronomie

institute: INRAE

organism: Botrytis cinerea

description:
12plex expression design for Botrytis cinerea, 3 probes per gene (62478 probes covering 20885 gene models + 15707 RANDOM probes), 2 copies on the array.
https://urgi.versailles.inra.fr/Species/Botrytis/Download

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Agilent-036279 Synechocystis PCC 6803 custom array

city: Kawasaki

first: Takashi

last: Osanai

state: Kanagawa

address: 1-1-1, Higashimita, Tamaku

department: School of Agriculture

institute: Meiji University

organism: Synechocystis sp. PCC 6803

description: Arrays of this design have barcodes that begin with 16036279 or 2536279.


title: Shewanella piezotolerans WP3 whole genome microarray

status: Public on Jan 30 2013

city: Shanghai

first: Huahua

last: Jian

address: No.800 Dongchuan Road

institute: Shanghai Jiao Tong University

organism: Shewanella piezotolerans WP3

manufacture_protocol:
1. PCR primers for 4744 of 4945 predicted ORFs in the Shewanella piezotolerans WP3 genome (CP000472.1; excluding 200 CDSs shorter than 150bp) were designed by using Primer version 5.0 and then synthesized.
2. ORF-specific fragments were amplified by using the following cycling conditions: denaturation for 30 s at 95℃, annealing for 1 min at 60℃ and extension for 1.5 min at 72℃, along with an initial 5 min denaturation at 95℃ and a final extension reaction at 72℃ for 10 min.
3. All PCR products were purified by using ethanol precipitation. The quality of the amplified products was checked by 1.5% agarose gel electrophoresis and ethidium bromide staining.
4. PCR products and microarray reagents were arrayed from a 384-well microtiter plate. Probes were printed in triplicate onto Telechem Superamine slides (Telechem, Sunnyvale, USA). The printed slides were dried and subjected to UV cross-linking.


title: [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [HuGene21st_Hs_ENTREZG_18.0.0]

city: Toronto

first: Jan

last: Heng

state: ON

address: 25 Orde Street

country: Canada

institute: Lunenfeld-Tanenbaum Research Institute

description: Brainarray: HuGene21st_Hs_ENTREZG_18.0.0

manufacture_protocol: See manufacturer's web site


title: 4PLEX_PHYSCO_066853

city: Orsay

first: Stéphanie

last: Pateyron

address: Rue de Noetzlin _ Batiment 630

institute: IPS2_Institute of Plant Sciences Paris-Saclay

organism: Physcomitrium patens

description:
support: glass
32104 probes Forward en triplicat et 32104 probes reverse en duplicat
coating: aminosilane
Arrays of this design have barcodes that begin with 16066853 or 2566853.
contributor: Stéphanie Pateyron
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: AB 5500xl Genetic Analyzer (Rattus norvegicus)

status: Public on Nov 21 2012


title: Illumina HiSeq 2500 (Neurospora crassa)

status: Public on Jul 16 2015

organism: Neurospora crassa


title: Klug lab - Rhodobacter sphaeroides - 15k array Version 2 (144 sRNA; Agilent-027061)

status: Public on Aug 15 2012

city: Gießen

first: Gabriele

last: Klug

address: Heinrich-Buff-Ring 26-32

department: Molecular- and Microbiology

institute: Justus-Liebig University Gießen

organism: Cereibacter sphaeroides 2.4.1

manufacture_protocol: The microarray contains probes against 4,304 protein-coding genes, 79 rRNA and tRNA genes, and 144 intergenic regions. Three antisense probes with a length of 60 nt were designed for each gene or intergenic region, when possible. Microarray construction was performed following the instructions of Agilent (www.chem.agilent.com).


title: Ion Torrent Proton (Drosophila melanogaster)

status: Public on Dec 09 2014

organism: Drosophila melanogaster


title: Illumina NextSeq 500 (Blaptica dubia)

status: Public on Jun 17 2016

organism: Blaptica dubia