title: Illumina HiSeq 2500 (Citrullus lanatus)

status: Public on Jul 28 2017

last: GEO

country: USA

organism: Citrullus lanatus

technology: high-throughput sequencing

distribution: virtual


title: Illumina NextSeq 500 (Chlorocebus aethiops; Human alphaherpesvirus 1)

status: Public on Jul 27 2017

organism:
Chlorocebus aethiops
Human alphaherpesvirus 1


title: Illumina HiSeq 2500 (Methylomicrobium buryatense)

organism: Methylotuvimicrobium buryatense


title: 454 GS Junior (Drosophila melanogaster)

organism: Drosophila melanogaster


title: Illumina HiSeq 2500 (Caldicellulosiruptor bescii)

status: Public on Jul 30 2017

organism: Caldicellulosiruptor bescii


title: Illumina HiSeq 2500 (Mycobacterium bovis)

organism: Mycobacterium tuberculosis variant bovis


title: Agilent-064728 SmartForests_Custom_WhiteSpruce_8x60K_CGH_Array G4126A [Feature Number version]

status: Public on Jul 26 2017

city: Quebec

first: Julien

last: Prunier

state: QC

address: 1030 av. de la medecine

department: Forestry

country: Canada

institute: Université Laval

organism: Picea glauca

technology: in situ oligonucleotide

description:
Genotypic custom probes filtered from 4x180K CGH array.

Arrays of this design have barcodes that begin with 16064728 or 2564728.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2500 (Aspergillus flavus; Zea mays)

organism:
Zea mays
Aspergillus flavus


title: Agilent-064728 SmartForests_Custom_WhiteSpruce_8x60K_CGH_Array G4126A [Probe Name version]

description: Genotypic custom probes filtered from 4x180K CGH array.


title: Illumina HiSeq 2000 (Solea senegalensis)

status: Public on Jul 25 2017

organism: Solea senegalensis


title: [HT_Rat230_PM] Affymetrix HT RG-230 PM Array Plate, MBNI custom CDF version 19 (HTRat230PM_Rn_ENTREZG)

status: Public on Jul 31 2017

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Rattus norvegicus

description: Brainarray custom CDF version 19 probe set annotation (http://brainarray.mbni.med.umich.edu/Brainarray/)

manufacture_protocol: Affymetrix's protocol (see web site)


title: Illumina HiSeq 2500 (Populus alba x Populus glandulosa)

organism: Populus alba x Populus glandulosa


title: Illumina MiSeq (Stenotrophomonas maltophilia)

organism: Stenotrophomonas maltophilia


title: PacBio RS (Danio rerio)

organism: Danio rerio


title: Agilent-067672 Salamandra infraimmaculata Microarray (GeneName version)

city: Braunschweig

first: Daniel

last: Goedbloed

address: Mendelssohnstrasse 4

country: Germany

institute: TUBS

organism: Salamandra infraimmaculata

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NextSeq 500 (Trametes cinnabarina)

organism: Trametes cinnabarina


title: Illumina HiSeq 2500 (Homo sapiens; Influenza A virus (A/reassortant/NIBRG-121(California/07/2009 x PR8)(H1N1)))

status: Public on Jul 21 2017

organism:
Homo sapiens
Influenza A virus (A/reassortant/NIBRG-121(California/07/2009 x PR8)(H1N1))


title: Illumina HiSeq 2500 (Sulfolobus islandicus)

organism: Saccharolobus islandicus


title: Illumina HiSeq 2000 (Festuca arundinacea)

status: Public on Jul 20 2017

organism: Lolium arundinaceum


title: 2008-02-20_RDKK017_Hpyl_60mer_4plex

city: Mitaka

first: Takako

last: Osaki

state: Tokyo

department: Department of Infectious Diseases

country: Japan

institute: Kyorin University School of Medicine

organism: Helicobacter pylori 26695

manufacture_protocol: not provided


title: Illumina HiSeq 2500 (Daphnia magna)

organism: Daphnia magna


title: HiSeq X Ten (Microtus fortis)

status: Public on Jul 19 2017

organism: Alexandromys fortis


title: Illumina NextSeq 500 (Apis mellifera)

organism: Apis mellifera


title: Agilent-073146 Catma_IRHS_v1_with_AlternariaBr_v1.2 071114

city: BEAUCOUZE

first: Sandra

last: Pelletier

address: 42, rue Georges Morel - BP 60057

country: France

institute: INRA

organism:
Arabidopsis thaliana
Alternaria brassicicola

description: Sondes Alternaria Nimblegen + catma-URGV - 489LTR


title: Illumina HiSeq 2000 (Drosophila arizonae)

organism: Drosophila arizonae


title: Illumina HiSeq 1000 (Drosophila yakuba)

organism: Drosophila yakuba


title: Illumina HiSeq 1000 (Drosophila virilis)

organism: Drosophila virilis


title: Illumina HiSeq 2000 (Dicentrarchus labrax)

organism: Dicentrarchus labrax


title: Illumina HiSeq 4000 (Chrysanthemum x morifolium)

status: Public on Jul 18 2017

organism: Chrysanthemum x morifolium


title: [RTA-1_0] Affymetrix Rat Transcriptome Array 1.0 [probe set (exon) CSV version]

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

organism: Rattus norvegicus

description:
Annotation was derived from the Affymetrix annotation file RTA-1_0.na36.1.rn6.probeset.csv:

#%create_date=Fri Sep 09 16:50:05 2016 PST
#%chip_type=RTA-1_0
#%lib_set_name=RTA-1_0
#%lib_set_version=r1
#%genome-species=Rattus norvegicus
#%genome-version=rn6
#%genome-version-ucsc=rn6
#%genome-version-ncbi=Rnor_6.0
#%genome-version-create_date=2014-07-13
#%netaffx-annotation-date=2016-03-15
#%netaffx-annotation-netaffx-build=36.1
#%netaffx-annotation-tabular-format-version=1.0
#%netaffx-annotation-data-type=probe_set

distribution: commercial

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 3000 (Cercocebus atys)

organism: Cercocebus atys


title: Illumina HiSeq 4000 (Verbena bonariensis)

organism: Verbena bonariensis


title: Illumina HiSeq 2000 (mixed DNA library)

status: Public on Jul 17 2017

organism: mixed DNA library


title: Illumina HiSeq 2500 (Staphylococcus aureus USA300-0114)

organism: Staphylococcus aureus USA300-0114


title: Illumina HiSeq 2000 (Humulus lupulus)

organism: Humulus lupulus


title: Illumina HiSeq 2000 (Hepatitis B virus; Homo sapiens)

organism:
Homo sapiens
Hepatitis B virus


title: Illumina NextSeq 500 (Streptococcus pneumoniae)

organism: Streptococcus pneumoniae


title: Illumina HiSeq 2500 (Trichoplusia ni)

organism: Trichoplusia ni


title: Illumina HiSeq 2500 (Plasmodium yoelii yoelii 17XNL)

status: Public on Jul 15 2017

organism: Plasmodium yoelii yoelii 17XNL


title: Illumina HiSeq 2500 (Cloeon viridulum)

status: Public on Jul 13 2017

organism: Cloeon viridulum


title: Illumina HiSeq 2500 (Salmo salar)

organism: Salmo salar


title: Illumina HiSeq 2000 (Methylomonas sp. DH-1)

organism: Methylomonas sp. DH-1


title: Illumina HiSeq 2000 (Beta macrocarpa)

status: Public on Jul 14 2017

organism: Beta macrocarpa


title: Illumina HiSeq 1500 (Citrus sinensis)

organism: Citrus sinensis


title: Illumina HiSeq 1500 (Pisum sativum)

organism: Lathyrus oleraceus


title: Illumina HiSeq 2500 (Staphylococcus aureus subsp. aureus NCTC 8325)

status: Public on Jul 12 2017


title: HiSeq X Ten (Ovis aries)

organism: Ovis aries


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [CDF: hugene20st_Hs_ENTREZG, Brainarray version 21]

city: Mannheim

first: Carsten

last: Sticht

address: Theodor-Kutzer-Ufer

department: ZMF

institute: University Heidelberg

organism: Homo sapiens

description: This is identical to GPL16686  but a custom CDF environment was used to extract data [Brainarray Version 21, hugene20st_21]. CDF and other files can be downloaded at web link below.

manufacture_protocol: See manufacturer's web site.


title: Lactuca sativa L Lsativa_v1

city: Rotondella

first: loretta

last: daddiego

state: MT

country: Italy

institute: ENEA C.R. Trisaia

organism: Lactuca sativa

distribution: non-commercial

manufacture_protocol: Probes were synthesized via in situ on chips based on CustomArrayTM semiconductor technology by using a CustomArrayTM Synthesizer (CustomArray Inc., Bothell, WA, USA).


title: Illumina HiSeq 2500 (Nematostella vectensis)

organism: Nematostella vectensis


title: Illumina HiSeq 4000 (Lactococcus lactis)

organism: Lactococcus lactis


title: Illumina HiSeq 2000 (Mouse mammary tumor virus; Mus musculus)

organism:
Mus musculus
Mouse mammary tumor virus


title: 454 GS FLX (human gut metagenome)

organism: human gut metagenome


title: Illumina HiSeq 2500 (Eisenia fetida)

organism: Eisenia fetida


title: Illumina HiSeq 4000 (Mus)

organism: Mus


title: HiSeq X Ten (Ipomoea batatas)

organism: Ipomoea batatas


title: Illumina HiSeq 2500 (Ophiocordyceps sp. SC16a)

organism: Ophiocordyceps kimflemingiae


title: Illumina HiSeq 3000 (Macaca mulatta)

organism: Macaca mulatta


title: Illumina HiSeq 2500 (Blumeria graminis f. sp. hordei; Hordeum vulgare)

organism:
Hordeum vulgare
Blumeria hordei


title: Illumina HiSeq 2500 (Arabidopsis thaliana; Homo sapiens)

status: Public on Jul 11 2017

organism:
Arabidopsis thaliana
Homo sapiens


title: Illumina HiSeq 1500 (Medicago truncatula)

organism: Medicago truncatula


title: Illumina HiSeq 2500 (Mouse mammary tumor virus; Mus musculus)


title: Illumina HiSeq 2500 (Trichodesmium erythraeum IMS101)

status: Public on Jul 10 2017

organism: Trichodesmium erythraeum IMS101


title: Illumina HiSeq 2500 (Clytia hemisphaerica)

organism: Clytia hemisphaerica


title: Illumina MiSeq (1,4-dioxane-degrading enrichment culture)


title: HiSeq X Ten (Trifolium repens)

organism: Trifolium repens


title: Illumina HiSeq 2500 (Thermococcus paralvinellae)

organism: Thermococcus paralvinellae


title: Illumina HiSeq 2500 (Kryptolebias marmoratus)

organism: Kryptolebias marmoratus


title: Illumina MiSeq (Anolis carolinensis)

status: Public on Jul 09 2017

organism: Anolis carolinensis


title: Illumina NextSeq 500 (Haloferax volcanii)

organism: Haloferax volcanii


title: Illumina HiSeq 2500 (Brucella abortus 544)

status: Public on Jul 07 2017

organism: Brucella abortus 544


title: Illumina Human Infinium Omni2.5-8 v1.3 BeadChip

city: San Diego

last: Illumina Inc.

address: 9885 Towne Centre Drive

institute: Illumina Inc.

organism: Homo sapiens

manufacture_protocol: See manufacturer's website


title: Illumina NextSeq 500 (Zobellia galactanivorans)

organism: Zobellia galactanivorans


title: Illumina HiSeq 2000 (Mycobacterium tuberculosis M1458)

organism: Mycobacterium tuberculosis M1458


title: Illumina Genome Analyzer IIx (Mycobacterium bovis BCG str. Tokyo 172)

organism: Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172


title: Ion Torrent Proton (Eumetopias jubatus)

status: Public on Jul 06 2017

organism: Eumetopias jubatus


title: Illumina Genome Analyzer (Salvia miltiorrhiza)

organism: Salvia miltiorrhiza


title: Illumina HiSeq 2000 (Hylobates lar)

organism: Hylobates lar


title: Illumina HiSeq 2500 (Vibrio vulnificus)

organism: Vibrio vulnificus


title: Illumina HiSeq 2500 (Mus)

organism: Mus


title: Illumina HiSeq 2500 (Cordyceps militaris)

status: Public on Jul 05 2017

organism: Cordyceps militaris


title: Illumina MiSeq (Pseudomonas stutzeri)

organism: Stutzerimonas stutzeri


title: NextSeq 550 (Schizosaccharomyces pombe)

organism: Schizosaccharomyces pombe


title: Agilent-064054 Dicentrarchus labrax array

status: Public on Jul 08 2017

city: Castellón

first: Josep

middle: A

last: Calduch-Giner

address: Ribera de Cabanes

country: Spain

institute: Institute of Aquaculture Torre de la Sal (CSIC)

organism: Dicentrarchus labrax

description:
29012014-seabass

Arrays of this design have barcodes that begin with 16064054 or 2564054.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2000 (Puccinia triticina)

organism: Puccinia triticina


title: HiSeq X Ten (Drosophila melanogaster)

organism: Drosophila melanogaster


title: Illumina MiSeq (Salmonella enterica subsp. enterica serovar Typhimurium)


title: Illumina HiSeq 2000 (Mycobacterium tuberculosis H37Ra)

organism: Mycobacterium tuberculosis H37Ra


title: Illumina HiSeq 1500 (Sinorhizobium meliloti)

status: Public on Jul 03 2017

organism: Sinorhizobium meliloti


title: Agilent-028943 S. cerevisiae Custom CGH array (Probe name version)

status: Public on Jul 04 2017

city: Hangzhou

first: Daoqiong

last: Zheng

state: Zhejiang

address: 866 Yuhangtang Road

department: Institute of Microbiology

country: China

institute: College of Life Sciences, Zhejiang University

organism: Saccharomyces cerevisiae

description: Agilent-028943:Petes custom array design for S. cerevisiae CGH with lambda dosage controls and tiled rDNA, X/Yprime, CUP1, and SFA1


title: Codelink Bioarray (Applied Microarrays/Motorola Life science)

status: Public on Jul 01 2017

city: Tokyo

first: Satoru

last: Noguchi

address: 4-1-1, Ogawahigashi, Kodaira

department: Neuromuscular Research

institute: National Institute of Neuroscience, NCNP

organism: Mus musculus

technology: spotted oligonucleotide


title: Illumina NextSeq 500 (Eumetopias jubatus)


title: NimbleGen Triticum aestivum array [110121_Taestivum-HD12; gene-level]

city: evry

first: Soubigou-Taconnat

last: Ludivine

address: 2 rue gaston crémieux

department: URGV

organism: Triticum aestivum

description: 145804 oligos/chamber; 3 probes/Unigen. Condensed version of GPL17441.


title: Illumina Genome Analyzer IIx (Mus)


title: Nanostring Mus musculus

city: Salt Lake City

first: Jared

last: Rutter

state: Utah

address: 15 N Medical Drive East, Rm 4100

department: Biochemistry

institute: University of Utah

technology: other

manufacture_protocol: see manufacturer's website, details below


title: NimbleGen Human CGH 2.1M Whole-Genome Tiling Array [100718_HG18_WG_CGH_v2D_HX1]

city: Madison

first: Inc

last: Nimblegen Systems

state: WI

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

organism: Homo sapiens

description:
Annotation in this record based on hg18, NCBI human build 36.
Design name: 100718_HG18_WG_CGH_v2D_HX1

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Agilent-019871 Hughes Fly 44K v1.0 array (Feature Number version)

city: Toronto

first: Howard

middle: D

last: Lipshitz

state: ON

address: 1 King's College Circle

department: Molecular Genetics

institute: University of Toronto

manufacture_protocol: Agilent inkjet technology; 60-mer probes; probes for 12396 mRNAs were designed from Drosophila melanogaster cDNA release 5.5 using OligoPicker.  Negative control probes were designed from 1000 random sequences using OligoPicker.


title: Agilent-038464 CaSC5314_SnpCgh_v1_Santos 033626

city: S. Michele all'Adige (TN)

first: Tobias

last: Weil

address: Via E. Mach, 1

institute: Fondazione Edmund Mach

organism: Candida albicans SC5314

description:
Arrays of this design have barcodes that begin with 16038464 or 2538464.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 1500 (Pan troglodytes)

last: GEO

organism: Pan troglodytes


title: Illumina HiSeq 4000 (Gorilla gorilla)

organism: Gorilla gorilla


title: Agilent-084226 CBTmouse_circRNA_v1.2

city: Beijing

first: Yuan

last: Zhou

address: 38 Xueyuan Rd, Haidian District

department: Department of Biomedical Informatics and Department of Physiology and Pathophysiology, School of Basic Medical Sciences

institute: Peking University

description:
Arrays of this design have barcodes that begin with 16084226 or 2584226.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Exiqon miRCURY LNA microRNA array, 6th generation [miRBase v16, condensed Probe_ID version]

city: Chengdu

first: shiyan

middle: Shi

last: Gu

state: Sichuan

address: Number 17 on the 3rd The people of South Road

department: Department of Environmental and Occupational Health

institute: Sichuan University


title: Serum_microRMA

status: Public on May 31 2017

city: Guangzhou

first: Jiang

last: Liu

address: 107 Yanjiang West Road

institute: Sun Yat-sen Memorial Hospital, Sun Yat-sen University

manufacture_protocol: custom microarray


title: Agilent-078966 O157_NCBI2015 [Feature Number version]

status: Public on Jun 30 2017

city: Tainan

first: Jenn-Wei

last: Chen

address: No.1, University Road

country: Taiwan

institute: National Cheng Kung University

organism: Escherichia coli O157:H7 str. EDL933

description:
Arrays of this design have barcodes that begin with 16078966 or 2578966.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 3000 (Chlamydomonas reinhardtii)

organism: Chlamydomonas reinhardtii


title: NimbleGen Triticum aestivum array [110121_Taestivum-HD12]

status: Public on Jan 19 2016

city: Beaucouze

first: sandrine

last: balzergue

address: Rue G. Morel

description: 145804 oligos/chamber; 3 probes/Unigen.

first: Said

last: Mouzeyar

first: Jennifer

last: Yansouni

first: Sandrine

last: Balzergue


title: Agilent-070467 Cottus CGH array G4126A

city: Ploen

first: Stefan

last: Dennenmoser

address: August-Thienemann Str. 2

department: Evolutionary Genetics

institute: Max-Planck Institute for Evolutionary Biology

organism: Cottus

description:
Arrays of this design have barcodes that begin with 16070467 or 2570467

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Spot identifier.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

The CLONE_ID identifiers are searchable at:
ZFIN  https://zfin.org/
HGNC  http://www.genenames.org/
RefSeq  https://www.ncbi.nlm.nih.gov/refseq/rsg/


title: State Key Laboratory Human lncRNA array 2412

first: Li-Si

last: Zeng

state: Guangdong

address: 651 Dongfeng Road East

department: Sun Yat-Sen University Cancer Center

institute: Sun Yat-Sen University

manufacturer: State Key Laboratory of Oncology in South China,Sun Yat-sen University

manufacture_protocol: 2412 lncRNA probes were printed onto slides using the SmartArrayerTM 136 printer (CapitalBio,Inc.,Beijing,China)


title: Agilent-067624 Cottus CGH G4126A

description:
Establishing probes

Arrays of this design have barcodes that begin with 16067624 or 2567624

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Spot identifier.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

The CLONE_ID identifiers are searchable at:
ZFIN  https://zfin.org/
HGNC  http://www.genenames.org/
RefSeq  https://www.ncbi.nlm.nih.gov/refseq/rsg/


title: Agilent-015239 Yeast Whole Genome ChIP-on-chip Microarray (G4493A)

status: Public on Oct 30 2007

city: Cambridge

first: Stephen

middle: P

last: Bell

state: MA

address: 68-630, 77 Massachusetts Ave.

department: Biology

institute: MIT

description: The Yeast Whole Genome ChIP-on-chip Microarray is specifically designed for location analysis of yeast (S. cerevisiae) DNA binding proteins by pairing chromatin immunoprecipitation (ChIP) with Agilent DNA microarrays. These sets deliver robust hybridization and reliable binding data with greater true binding events and fewer false positives. In addition, Agilent provides flexibility by offering both a high resolution yeast microarray as well a multi-array slide format.

manufacture_protocol: please see http://www.chem.agilent.com/Scripts/PDS.asp?lPage=50883 for details.


title: Agilent-069670 Phelipanche_v1

status: Public on May 25 2017

city: BEAUCOUZE

first: Sandra

last: Pelletier

address: 42, rue Georges Morel - BP 60057

institute: INRA

organism: Phelipanche ramosa

first: S


title: AB 5500 Genetic Analyzer (Mus musculus)

status: Public on Mar 14 2013


title: Illumina HiSeq 2000 (Schizosaccharomyces pombe)

status: Public on Jul 28 2011

organism: Schizosaccharomyces pombe


title: [Rat230_2] Affymetrix Rat Genome 230 2.0 Array

status: Public on Jul 20 2004

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Rattus norvegicus

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 07, 2012: annotation table updated with netaffx build 32
June 27, 2016: annotation table updated with netaffx build 35

relation: Alternative to: GPL6872 (Alternative CDF)

relation: Alternative to: GPL7598 (Alternative CDF)

relation: Alternative to: GPL8201 (Alternative CDF)

relation: Alternative to: GPL8597 (Alternative CDF)

relation: Alternative to: GPL9199 (Alternative CDF)

relation: Alternative to: GPL10226 (Alternative CDF)

relation: Alternative to: GPL14123 (Alternative CDF)

relation: Alternative to: GPL14976 (Alternative CDF:Rn230_Rn_UG_v9)

relation: Alternative to: GPL16251 (Alternative CDF [Brain Array Version 13.0.0, ENSG])

relation: Alternative to: GPL17780 (Alternative CDF:Rat2302_Rn_ENTREZG.cdf version 14.1.0)

relation: Alternative to: GPL19144 (Alternative CDF [Rat2302_Rn_ENTREZG_18.0.0])

relation: Alternative to: GPL22499 (Alternative CDF [Rat2302_Rn_ENTREZG_19.0.0])

manufacture_protocol:
see manufacturer's web site

The GeneChip Rat Genome 230 2.0 Array is a powerful tool for toxicology, neurobiology, and other applications using rat as a model organism.

- Provides comprehensive coverage of the transcribed rat genome on a single array
- Comprised of more than 31,000 probe sets, analyzing over 30,000 transcripts and variants from over 28,000 well-substantiated rat genes
- The publicly available draft of the rat genome and leading public rat databases were used to refine sequences and provide a higher quality of data output

All probe sets represented on the GeneChip Rat Expression Set 230 are included on the GeneChip Rat Genome 230 2.0 Array. Sequences used in the design of the GeneChip Rat Genome 230 2.0 Array were selected from GenBank, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 99, June 2002) and then refined by analysis and comparison with the publicly available draft assembly of the rat genome from the Baylor College of Medicine Human Genome Sequencing Center (June 2002).

The GeneChip Rat Genome 230 2.0 Array includes representation of the RefSeq database sequences and probe sets related to sequences and refined EST clusters previously represented on the GeneChip Rat Genome U34 Set.

Oligonucleotide probes complementary to each corresponding sequence are synthesized in situ on the arrays. Eleven pairs of oligonucleotide probes are used to measure the level of transcription of each sequence represented on the GeneChip Rat Genome 230 2.0 Array.


title: Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Feature Number version)

status: Public on Jul 13 2011

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

description:
Design ID: 028005
Build version: mm9:NCBI37:Jul2007

Arrays of this design have barcodes that begin with 16028005 or 2528005.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL10787.

manufacture_protocol: See manufacturer's web site (http://www.agilent.com/).