title: Agilent-084341 Saccoglossus kowalevskii transcriptome based microarray (Feature number version)

status: Public on Sep 30 2017

city: Onna-son

first: Keita

last: Ikegami

state: Okinawa

address: 1919-1 Tancha

country: Japan

institute: Okinawa Institute of Science and Technology Graduate University

organism: Saccoglossus kowalevskii

technology: in situ oligonucleotide

distribution: custom-commercial

first: Mayuko

last: Hamada

first: Noriyuki

last: Satoh

manufacture_protocol:
see manufacturer's web site at http://www.agilent.com/
http://www.genomics.agilent.com/literature.jsp?pgId=AG-PG-6&contentType=Application&languageSelectionDD=English&crumbAction=push&tabId=AG-PR-1001&page=1


title: Agilent-084342 Ptychodera flava transcriptome based microarray (Feature number version)

organism: Ptychodera flava


title: Agilent-054429 Branchiostoma floridae transcriptome based microarray (Feature number version)

organism: Branchiostoma floridae

first: Takeshi

last: Takeuchi

last: Kawashima


title: Agilent-084170 Acanthaster planci transcriptome based microarray (Feature number version)

organism: Acanthaster planci


title: Custom Exiqon RT-PCR microRNA assay

status: Public on Mar 28 2018

city: Vienna

first: Matthias

last: Hackl

state: Austria

address: Leberstrasse 20

country: Austria

institute: TAmiRNA GmbH

organism: Homo sapiens

technology: RT-PCR

description: PCR assay

distribution: virtual

manufacture_protocol: PCR amplification was performed in a 384-well plate format using custom pick&mix plates (Exiqon, Denmark)


title: Illumina HiSeq 2500 (Trichinella spiralis)

status: Public on Sep 27 2017

last: GEO

country: USA

organism: Trichinella spiralis

technology: high-throughput sequencing


title: Illumina HiSeq 4000 (Drosophila sechellia)

status: Public on Sep 29 2017

organism: Drosophila sechellia


title: Nanostring nCounter Custom Codeset HAFLER_C1638 T Cell Activation (CodeSet HuTH17)  II

city: Boston

first: Dan

last: Hu

address: 60 Fenwood Road

institute: Brigham and Women's Hospital

technology: other

description: nCounter gene expression analysis system

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Nanostring nCounter Treg Custom CodeSet

status: Public on Sep 28 2017

first: CBDM

last: Lab

state: MA

address: 77 Avenue Louis Pasteur

department: Microbiology and Immunobiology

institute: Harvard Medical School

organism: Mus musculus

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Illumina HiSeq 2000 (Apis cerana cerana)

organism: Apis cerana cerana


title: Nanostring nCounter Custom Codeset HAFLER_C1638 T Cell Activation (CodeSet HuTH17)


title: Agilent-042949 wxc_9_2 042948 Camellia sinensis

city: Hangzhou

first: Xinyuan

last: Hao

state: Zhejiang

address: No.9 Meiling South Road, Xihu District

country: China

institute: TRICAAS

organism: Camellia sinensis

manufacture_protocol: Agilent Technologies


title: Illumina HiSeq 2500 (Trichuris muris)

organism: Trichuris muris


title: Illumina HiSeq 2500 (Plectus sambesii)

organism: Plectus sambesii


title: Illumina HiSeq 2500 (Toxoplasma gondii RH)

organism: Toxoplasma gondii RH


title: Ion Torrent Proton (Danio rerio)

organism: Danio rerio


title: Illumina HiSeq 2500 (Entamoeba histolytica)

organism: Entamoeba histolytica


title: Illumina HiSeq 2500 (Fagopyrum tataricum)

status: Public on Sep 25 2017

organism: Fagopyrum tataricum


title: Illumina HiSeq 2000 (Aspergillus fumigatus; Mus musculus)

status: Public on Sep 26 2017

organism:
Mus musculus
Aspergillus fumigatus


title: Illumina NextSeq 500 (Rhodobacter sphaeroides)

organism: Cereibacter sphaeroides


title: Illumina NextSeq 500 (Azospirillum brasilense)

organism: Azospirillum brasilense


title: Illumina NextSeq 500 (Heterocephalus glaber)

organism: Heterocephalus glaber


title: Illumina HiSeq 2500 (Mus musculus papillomavirus type 1)

status: Public on Sep 21 2017

organism: Mus musculus papillomavirus type 1


title: Illumina Genome Analyzer (Salmonella enterica subsp. enterica serovar Typhimurium)

status: Public on Sep 22 2017


title: Illumina MiSeq (rat gut metagenome)

organism: rat gut metagenome


title: Illumina HiSeq 2000 (Aspergillus glaucus)

organism: Aspergillus glaucus


title: Candida albicans 45K assembly 21 [Probe name version]

status: Public on Sep 23 2017

city: Dublin

first: Gary

middle: P.

last: Moran

address: Lincoln Place

department: Dental Science

country: Ireland

institute: Trinity College Dublin

organism: Candida albicans

relation: Alternative to: GPL10903 (feature number version)


title: Rubella virus-specific proteome microarray chip (Antigen Discovery, Inc., Irvine, CA)

city: Rochester

first: Gregory

middle: A.

last: Poland

state: MN

address: 200 1st St SW

institute: Mayo Clinic

organism: Rubella virus vaccine strain RA27/3

technology: spotted peptide or protein

manufacture_protocol: cDNAs were created by RT-PCR from Rubella virus/RV (strain RA27/3, Taxonomy ID) infected cells (total RNAs were extracted using the Qiagen RNeasy Plus mini kit and PCR was performed using the Novagen’s KOD Hot Start DN Polymerase kit/Cat # 71086). The following RV-specific primers were used: for envelope glycoprotein 1/E1 RubE1-F gaggaggctttcacctacctctgca and RubE1-R gcgcggcgctatagcgc; for envelope glycoprotein 2/E2 RubE2-F gggctccagccccgcgct and RubE2-R gccataggcgggggggttgt ; for capsid protein/CP RubC-F atggcttctactacccccatcaccatgga and RubC-R ggcgcgcgcggtgcc ; for nonstructural protein P150 Rub150-F atggagagactcctagatgaggttc and Rub150-R gacagggggaccgcg ; for nonstructural protein P90 RubP90-F cggggcggtggcacc and RubP90-R tagtcagcgtcgtggagattggc. PCR amplicons were verified by sequencing. The amplicons were inserted into pXi T7-based exvectors, and the products were expressed in coupled in-vitro transcription-translation (IVTT) reactions as described previously (Doolan DL et al., Proteomics. 2008 Nov;8(22):4680-94) and printed onto microarray slides as protein/polypeptide spots representing the individual rubella virus proteins/polypeptides. Larger genes (P150 and P90) were amplified in segments overlapping by 150 nucleotides and expressed on the chip as three spots of overlapping polypeptides/fragments for P150 (i.e., P150s1, P150s2, and P150s3), and three spots for P90 (i.e., P90s1, P90s2, and the whole P90). Glycoproteins E1 and E2, and the capsid C protein were expressed on the chip as single spots.


title: Agilent Custom Chickpea Expression  8x60k Array (AMADID: 037094) designed  by Genotypic Technology Private Limited.

status: Public on Sep 20 2017

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Cicer arietinum


title: Illumina HiSeq 4000 (Scyliorhinus retifer)

status: Public on Sep 18 2017

organism: Scyliorhinus retifer


title: NanoString nCounter Mouse Gene Expression Custom Chip MG550

status: Public on Sep 19 2017

first: Oleg

last: Butovsky

address: 77 Avenue Louis Pasteur, Office 614

department: Center of Neurologic Diseases

institute: Brigham and Women's Hospital, Harvard Medical School

organism: Mus musculus


title: Illumina HiSeq 4000 (Schima superba)

organism: Schima superba


title: NanoString nCounter Mouse Gene Expression Custom Chip MG534


title: NanoString nCounter Mouse Gene Expression Custom Chip MG468


title: Illumina HiSeq 4000 (Cryptocarya concinna)

organism: Cryptocarya concinna


title: Illumina HiSeq 2000 (Gadus morhua)

organism: Gadus morhua


title: Illumina NextSeq 500 (Daphnia pulex)

organism: Daphnia pulex


title: Exiqon miRCURY LNATM microRNA Array, v.11.0

status: Public on Sep 15 2017

city: Singapore

first: Lee Lee

last: Wong

address: 14 Medical Drive, 08-01

department: Medicine

country: Singapore

institute: National University of Singapore

organism: Homo sapiens

technology: spotted oligonucleotide

manufacture_protocol: Reter to manufacturer's website (www.exiqon.com)


title: [HG-U219] Affymetrix Human Genome U219 Array [CDF: Brainarray HGU219_Hs_ENTREZG_20.0.0]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description:
This identical to GPL13667 but a custom cdf environment was used to extract data.
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/20.0.0/entrezg.asp

relation: Alternative to: GPL13667 (Alternative CDF [official])

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Daphnia magna)

organism: Daphnia magna


title: Applied Biosystem Homo sapiens 232 microRNA expression profiling

city: Taoyuan

first: Yi-Hsuan

last: Lai

address: No.259, Wenhua 1st Rd., Guishan Dist.

country: Taiwan

institute: Chang Gung University

distribution: non-commercial

manufacture_protocol: See manufacturer's website


title: Illumina HiSeq 4000 (Colletotrichum fructicola)

status: Public on Sep 14 2017

organism: Colletotrichum fructicola


title: Illumina HiSeq 2000 (Ustilago maydis; Zea mays)

organism:
Zea mays
Mycosarcoma maydis


title: AB 5500xl Genetic Analyzer (Halomonas sp. HL48; Halomonas sp. HL58)

status: Public on Sep 13 2017

organism:
Halomonas sp. HL48
Halomonas sp. HL58


title: AB 5500xl Genetic Analyzer (Halomonas sp. HL58)

status: Public on Sep 12 2017

organism: Halomonas sp. HL58


title: Abcam Human FirePlex miRNA assay

first: SAUMYA

last: Das

address: 185 Cambridge Street

institute: MGH

description: Hybridization based miRNA assay

distribution: commercial


title: Illumina HiSeq 4000 (Escherichia coli O157:H7 str. EDL933)

organism: Escherichia coli O157:H7 str. EDL933


title: Illumina NextSeq 500 (Staphylococcus aureus)

organism: Staphylococcus aureus


title: Illumina NextSeq 500 (Escherichia coli K-12)

organism: Escherichia coli K-12


title: Illumina HiSeq 2000 (Nitrosopumilus maritimus SCM1)

status: Public on Sep 11 2017

organism: Nitrosopumilus maritimus SCM1


title: Operon Human_V4.0

city: Helsinki

first: Liang

last: Wang

address: Viikinkaari 5

country: Finland

institute: University of Helsinki

description: 35k human Genome Array. This array contains 35035 DNA oligos.

manufacture_protocol: See manufacturer website


title: Agilent-072274 MG1363_ncRNA [ACCESSION_STRING version]

city: Groningen

first: Ana

last: Solopova

address: Nijenborgh 7

department: MolGen

country: Netherlands

institute: RUG

organism: Lactococcus cremoris

description:
MG1363 and ncRNA design Jan2015

Arrays of this design have barcodes that begin with 16072274 or 2572274.

Please note that the LLMGnc_* IDs are the non-coding RNAs published in van der Meulen et al., 2016;
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829306/

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 4000 (Apis mellifera)

organism: Apis mellifera


title: Illumina HiSeq 2000 (Pelotomaculum thermopropionicum)

status: Public on Sep 07 2017

organism: Pelotomaculum thermopropionicum


title: Illumina HiSeq 2000 (Methanocella conradii)

organism: Methanocella conradii


title: Illumina HiSeq 2000 (Pseudomonas savastanoi pv. phaseolicola 1448A)


title: AB 5500xl Genetic Analyzer (Halomonas sp. HL48)

organism: Halomonas sp. HL48


title: Illumina HiSeq 2000 (Methanocella conradii; Pelotomaculum thermopropionicum)

organism:
Pelotomaculum thermopropionicum
Methanocella conradii


title: NextSeq 550 (Porphyromonas gingivalis W83)

organism: Porphyromonas gingivalis W83


title: Illumina HiSeq 4000 (Ginkgo biloba)

organism: Ginkgo biloba


title: Illumina HiSeq 2500 (Pseudomonas putida)

organism: Pseudomonas putida


title: Illumina HiSeq 2500 (Drosophila melanogaster; Drosophila pseudoobscura)

organism:
Drosophila melanogaster
Drosophila pseudoobscura


title: Illumina HiSeq 2000 (Cicer reticulatum)

status: Public on Sep 06 2017

organism: Cicer reticulatum


title: Illumina HiSeq 1500 (Plutella xylostella)

status: Public on Sep 04 2017

organism: Plutella xylostella


title: Illumina HiSeq 2500 (Meyerozyma caribbica)

organism: Meyerozyma caribbica


title: miRLink microRNA Arrays v. 16

status: Public on Sep 05 2017

city: Athens

first: George

middle: I

last: Lambrou

state: Attiki

address: Thivon & Levadeias

department: First Department of Pediatrics

country: Greece

institute: National and Kapodistrian University of Athens

organism: Homo sapiens

description:
This array includes the following characteristics:
a) 8‐plex format (8 arrays per slide)
b) Up to 30‐mer probe length
c) 3 replicate features per miRNA
d) Entire Sanger miRBase 16.0 content for human on a single array (1,211 human miRNAs, 85 controls)

first: Alexandra

last: Lykoudi

first: Aggeliki

last: Kolialexi

first: Maria

last: Braoudaki

first: Charalampos

last: Siristatidis

middle: K

last: Papaioanou

last: Tzetis

first: Ariadni

last: Mavrou

first: Nikolas

last: Papantoniou

manufacture_protocol: Applied Microarrays


title: Illumina HiSeq 2500 ([Pseudomonas syringae] pv. tomato str. DC3000)

status: Public on Sep 01 2017

last: GEO

organism: Pseudomonas syringae pv. tomato str. DC3000


title: Illumina NextSeq 500 (Pseudomonas aeruginosa PAO1)

organism: Pseudomonas aeruginosa PAO1


title: Agilent-071197 Oryzias latipes array (Probe name version)

city: Fuchu-shi

first: Tsuyoshi

last: Shimmura

state: Tokyo

address: 3-8-1 Harumi-cho

institute: Tokyo University of Agriculture and Technology

organism: Oryzias latipes


title: Illumina NextSeq 500 (Plasmodium falciparum NF54)

organism: Plasmodium falciparum NF54


title: Illumina HiSeq 3000 ([Pseudomonas syringae] pv. tomato str. DC3000)


title: Agilent-041161

city: Philadelphia

first: Lin

last: Zhang

state: Pennsylvania

address: 421 Curie Blvd

institute: University of Pennsylvania

manufacture_protocol: see Agilent


title: Custom Human TaqMan Assays: ViiA7 Real-Time PCR System

city: Prague 10

first: Pavel

last: Soucek

address: Srobarova 48

country: Czech Republic

institute: National Institute of Public Health

description: RT-PCR ViiA7 Real-time PCR system made by Life Technologies.

manufacturer: Toxicogenomics Unit, National Institute of Public Health, Prague, Czech Republic

manufacture_protocol: Custom made-to-order or pre-designed TaqMan assays were used with protocol recommended by the producer (Life Technologies Corp., Carlsbad, CA, USA).


title: Qiagen Human Fibrosis miRNA PCR Array (MIHS-117Z)

city: London

first: Chrysanthi

last: Ainali

address: Strand, London WC2R 2LS, UK

country: United Kingdom

institute: King's College London

description: PCR assay


title: BGISEQ-500 (Arabidopsis thaliana)

organism: Arabidopsis thaliana


title: Illumina HiSeq 2500 (Romanomermis culicivorax)

status: Public on Sep 27 2017

organism: Romanomermis culicivorax


title: miRCURY LNA microRNA Array, 7th generation (miRBase 19; probeID version)

city: New Delhi

first: Sandeep

last: Saxena

state: New Delhi

address: Aruna Asaf Ali Marg

institute: National Institute of Immunology

organism:
Homo sapiens
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Macacine alphaherpesvirus 1
Human betaherpesvirus 5
human gammaherpesvirus 4
Herpesvirus saimiri (strain 11)
JC polyomavirus
Human immunodeficiency virus 1
Human betaherpesvirus 6B
Human gammaherpesvirus 8
Merkel cell polyomavirus
Betapolyomavirus hominis
Betapolyomavirus macacae

description:
Exiqon Array product number: 208500
Array version: 7th Gen
Array batch number: 35013
miRBase version: 19

manufacture_protocol: See Exiqon website


title: CAT-3x15K-Campylobacter-jejuni-subsp-jejuni-81116

city: St-Anne-de-Bellevue

first: Sebastien

last: Faucher

state: QC

address: 21,111 Lakeshore

department: Natural Resource Sciences

country: Canada

institute: McGill University

organism: Campylobacter jejuni subsp. jejuni 81116

manufacture_protocol: see manufacturer's web site http://www.mycroarray.com/


title: Illumina HiScanSQ (Arabidopsis thaliana)

status: Public on Apr 11 2017


title: Illumina HiSeq 2500 (Salmonella enterica subsp. enterica serovar Heidelberg)


title: [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: huex10st_Hs_ENSG_22.0]

first: GEO

last: admin

description:
Probe set data extracted from custom CDF:
huex10st_Hs_ENSG_22.0.0; Brainarray Version 22.0

manufacture_protocol: See manufacturer's web site


title: Agilent-074058 Custom Whole Genome Mycobacterium leprae 2x400K designed by Genotypic Technology (AMADID: 074058)

first: Genotypic

last: technology

organism: Mycobacterium leprae

description: NCBI Reference Sequence: NC_002677


title: RT²ProfilerPCRArrayTM kit of Mouse Innate Immune Responses & Adaptive (Qiagen)

city: Toronto

first: Tiago

last: Medina

address: 101 College Street

institute: University Health Network

organism: Mus musculus

description:
PCR assay
RT²ProfilerPCRArrayTM panel of PCR assays


title: CAT-3x15K-Campylobacter-jejuni-subsp-jejuni-81-176

organism: Campylobacter jejuni subsp. jejuni 81-176


title: NimbleGen_Fundulus heteroclitus_Expression Array_12x135k_All Probes [DesignID 11308]

status: Public on Jan 30 2013

city: Notre Dame

first: Jacqueline

last: Lopez

state: Indiana

address: 019 Galvin Life Science Center

department: Biology

institute: University of Notre Dame

organism: Fundulus heteroclitus

description:
This is a killifish (Fundulus heteroclitus) whole-genome expression array in HD2 12x135K format manufactured by Roche NimbleGen.

DESIGN_ID : 11308

native array description file : 100129_FH_JC_EXP.ndf
native array description file : 100129_FH_JC_EXP.txt

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Candida albicans 45K assembly 21

status: Public on Nov 15 2010

city: Dublin

first: Alessandro

last: Guida

address: belfield

institute: University College Dublin

organism: Candida albicans

relation: Alternative to: GPL24041 (probe name version)

manufacture_protocol: Oligonucleotides were designed the 27th of October 2007 according with the latest Candida albicans annotation from CGD (http://www.candidagenome.org)  assembly 21, using eArray from Agilent Technology (Design ID 017942). Each of 6101 open reading frames is represented by two oligonucleotides probes. Mitochondrial genes are indicated by the prefix CaalfMp. The probes were used to generate custom microarrays in a 4x44 K format with a randomized layout.


title: NanoString nCounter Human miRNA Expression Assay v2 [miRBase accession version]

status: Public on Sep 30 2014

first: Cindy

last: Yao

address: 661 University Avenue, Suite 510

institute: OICR

description: This platform includes the entire set of miRNAs assayed on the NanoString nCounter Human miRNA Expression Assay v2 including the negative and positive controls and non-mammalian spike-ins.


title: Ion Torrent S5 XL (Homo sapiens)


title: Illumina NextSeq 500 (Ovis aries)

status: Public on Sep 29 2016

organism: Ovis aries


title: Illumina HiSeq 2000 (Canis lupus familiaris)

status: Public on Jan 23 2013

organism: Canis lupus familiaris