title: Illumina HiSeq 2500 (Branchiostoma lanceolatum)

status: Public on Oct 31 2017

last: GEO

country: USA

organism: Branchiostoma lanceolatum

technology: high-throughput sequencing

distribution: virtual


title: HiSeq X Ten (Sus scrofa domesticus)

organism: Sus scrofa domesticus


title: Agilent-067581 Sparus aurata v3

city: Castellón

first: Josep

middle: A

last: Calduch-Giner

address: Ribera de Cabanes

country: Spain

institute: Institute of Aquaculture Torre de la Sal (CSIC)

organism: Sparus aurata

technology: in situ oligonucleotide

description:
13-06-2014 crado a partir de v2 (clones C2_ y C3_)

Arrays of this design have barcodes that begin with 16067581 or 2567581.

The identifiers in the ACCESSION_STRING column (e.g. C2_11273 etc.) represent the clone in our assembled transcriptomic database:
http://nutrigroup-iats.org/seabreamdb

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Kluyveromyces lactis whole genome tiling array [Design ID 25183571]

city: Houston

first: Lisha

last: Zhu

state: TX

address: 7000 fannin st

institute: UT Health Science Center at Houston

organism: Kluyveromyces lactis

manufacture_protocol: see Agilent's website


title: BIOTEC UniShrimp cDNA Chip [20120920_UniShrimpV6]

status: Public on Oct 30 2017

city: Pathum Thani

first: umaporn

last: uawisetwathana

address: 113 Thailand Science Park

department: Biosensing Technology Research Unit

country: Thailand

institute: National Center for Genetic Engineering and Biotechnology

organism: Penaeus monodon

technology: spotted DNA/cDNA

distribution: non-commercial

manufacture_protocol: Array Design:    Amplification  Approximately 5000 sequences will be amplified either from plasmids of EST clones or from the first strand cDNA template.  For amplification from EST clones, PCR reactions were optimized considering the following parameters: (1) amounts of template, (2) types of Taq DNA polymerase, (3) units of Taq DNA polymerase, and (4) MgCl2 concentrations.   In all experiments, the reactions were performed using purified plasmids as templates in a 96-well format PCR plate (Axygen) with final concentrations of the following components: 0.3 mM dNTPs, 1X buffer, 0.4 M each primer (LM13F: CAC GAC GTT GTA AAA CGA CGG CCA G and LM13R: CAT GGT CAT AGC TGT TTC CTG T, BioBasic).  Amplification was carried out for 35 cycles at the following settings: 940C for 30 sec, 600C for 30 sec, 720C for 3 min.    For amplification from first strand cDNA, PCR reactions were optimized considering the following parameters: (1) amounts of template, (2) MgCl2 concentrations, (3) units of Taq DNA polymerase, and (4) reaction volumes.   In all experiments, the reactions were performed using cDNA as templates in a 96-well format PCR plate (Axygen) with final concentrations of the following components: 0.4 mM dNTPs, 1X buffer, 0.6 uM each gene-specific primer (designed as described below; IDT, Singapore). Amplification was carried out for 38 cycles at the following settings: 940C for 30 sec, 570C for 60 sec, 720C for 3 min.  The resulting amplicons were electrophoretically analyzed on 1.5% agarose gel prepared in 0.5X TBE buffer.  Purification  The PCR products were purified using Multiscreen PCR 96 well purification plate (Millipore, #MSNU03050). Briefly, PCR products were thoroughly loaded to the purification plate and placed under a vacuum manifold.  The bound DNA on the plate will be washed with sterile water once in vacuo until completely dried.  To collect the purified products, sterile water was added to the Millipore plate and let stand for 5-10 min before resuspended into a polysterene V-shape 96-well plate (Corning, CoStar # 3897)   Microarray fabrication    Fifteen plates of 384-well print plates were used as source plates for microarray fabrication. Source plates were resuspended in 7 uL of 3xSSC buffer (Invitrogen, cat no.15557-044) and incubated at 4C overnight before printing. The cDNA microarrays were fabricated using Nanoprint LM210 microarray spotter (ArrayIt, USA) fitted with a 24-pin head on GAPS II amino-silane coated slides (CORNING, cat no.40005). A 11,136 spots/array pattern was designed by 24 X 20 spots per block, containing a total of 24 arrays. Each amplicon was spotted in replicate. The printed slides were UV-crosslinked at 200 mJ of energy (GS Gene Linker UV chamber, BIO-RAD) and stored at room temperature in a dry incubator.


title: Qiagen RT² Profiler PCR Array (PAHS-128Z)

city: Oxford

first: Naveed

last: Akbar

state: United Kingdom

address: Radcliffe Department of Medicine, University of Oxford

department: Cardiovascular Medicine

country: United Kingdom

institute: University of Oxford

organism: Homo sapiens

technology: RT-PCR

description:
PAHS-128Z
PCR assay
RT² Profiler PCR Arrays are highly reliable and sensitive gene expression profiling tools for analyzing focused panels of genes in  signal transduction, biological processes or disease research pathways using real-time PCR

manufacture_protocol: see manufacturer's website


title: Agilent-048102 Polynucleobacter asymbioticus SBS-Polynucleobacter-8x15

city: Vienna

first: Abhishek

last: Srivastava

address: Althanstrasse 14

country: Austria

institute: University of Vienna

organism: Polynucleobacter asymbioticus

description:
Polynucleobacter CRM design

Arrays of this design have barcodes that begin with 16048102 or 2548102.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent 8x60k Sparus aurata oligonucleotide microarray ID 079501

city: Barcelona

first: Isidoro

last: Metón

state: Barcelona

address: Joan XIII 27-31

department: Bioquímica i Fisiologia

institute: Universitat de Barcelona

technology: spotted oligonucleotide

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/; Agilent-079501


title: Human Exonic Evidence Based Oligonucleotides (HEEBO) Arrays [HOJ]

city: HYDERABAD

first: Murali

middle: Dharan

last: Bashyam

state: (Click to Select US State)

address: MJ MARKET

country: India

institute: CDFD

manufacture_protocol:
1.This study is done on 4 different platforms namely  HOAA (GPL15973), HOAI, HOJ  and HOR.
2.These 4 platforms are different batches of HEEBO arrays.
3.Spotted sequences are same in all platforms, there is minor difference in cordinates of sequences between platforms.
4.We mapped probe to GRCh37/hg19 assembly to assign updated gene and/or transcript identity.
5.Data are provided as per new mapping.


title: Exiqon miRCURY LNA microRNA array; 7th generation REV - hsa, mmu & rno; batch 208520-22; lot 35101-35101 (miRBase 18.0)

city: Shanghai

first: Ming

last: Chen

address: Yixue Road 138

country: China

institute: Fudan University

organism: Rattus norvegicus

description:
ProductDate=March 2012
ProductNumber=208520,208521,208522
LotNumberRange=35101-35101

ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 18.0
ArrayContents_CurrentNameColumnCoverage=Rattus norvegicus:100%

manufacture_protocol: See manufacturer's website: http://www.exiqon.com


title: Human Exonic Evidence Based Oligonucleotides (HEEBO) Arrays [HOAA]


title: Human Exonic Evidence Based Oligonucleotides (HEEBO) Arrays [HOR]


title: Illumina HiSeq 1000 (Agrobacterium tumefaciens)

status: Public on Oct 26 2017

organism: Agrobacterium tumefaciens


title: Illumina HiSeq 2000 (Aconitum carmichaelii)

organism: Aconitum carmichaelii


title: Human Exonic Evidence Based Oligonucleotides (HEEBO) Arrays [HOAI]


title: Illumina HiScanSQ (Vitis vinifera)

organism: Vitis vinifera


title: 454 GS FLX (Pyrobaculum calidifontis)

organism: Pyrobaculum calidifontis


title: 454 GS FLX (Pyrobaculum islandicum)

organism: Pyrobaculum islandicum


title: 454 GS FLX (Pyrobaculum arsenaticum)

organism: Pyrobaculum arsenaticum


title: 454 GS FLX (Pyrobaculum aerophilum)

organism: Pyrobaculum aerophilum


title: Agilent-042512 Pinus taeda Traumatest1

city: Göttingen

first: Victor

last: Chano

address: Buesgenweg 2

department: Forest Genetics and Forest Tree Breeding

country: Germany

institute: University of Göttingen

organism: Pinus taeda

description:
Arrays of this design have barcodes that begin with 16042512 or 2542512.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2000 (Pyrobaculum oguniense)

organism: Pyrobaculum oguniense


title: Illumina HiSeq 4000 (Pongo abelii)

organism: Pongo abelii


title: Illumina HiSeq 4000 (Xenopus tropicalis x Xenopus laevis)

status: Public on Oct 25 2017

organism: Xenopus tropicalis x Xenopus laevis


title: Ion Torrent Proton (mixed sample)

organism: mixed sample


title: Illumina HiSeq 2500 (Triticum aestivum; Zymoseptoria tritici)

organism:
Triticum aestivum
Zymoseptoria tritici


title: Ion Torrent Proton ([Candida] glabrata; Saccharomyces cerevisiae)

organism:
Saccharomyces cerevisiae
Nakaseomyces glabratus


title: Illumina Genome Analyzer IIx (Mycobacterium bovis BCG str. Pasteur 1173P2)

organism: Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2


title: Illumina HiSeq 2500 (Caenorhabditis elegans; Saccharomyces cerevisiae)

status: Public on Oct 24 2017

organism:
Saccharomyces cerevisiae
Caenorhabditis elegans


title: Illumina MiniSeq (Danio rerio)

organism: Danio rerio


title: Illumina HiSeq 2500 (Saccharomyces cerevisiae; Schizosaccharomyces pombe)

organism:
Schizosaccharomyces pombe
Saccharomyces cerevisiae


title: HiSeq X Ten (Cervus nippon)

organism: Cervus nippon


title: Illumina HiSeq 2000 (Carassius auratus)

organism: Carassius auratus


title: Illumina HiSeq 3000 (Brassica napus)

status: Public on Oct 23 2017

organism: Brassica napus


title: Sequel (Mus musculus)

status: Public on Oct 27 2017

organism: Mus musculus


title: Illumina HiSeq 4000 (Ustilago maydis; Zea mays)

organism:
Zea mays
Mycosarcoma maydis


title: 454 GS FLX+ (Emberiza melanocephala)

organism: Emberiza melanocephala


title: Illumina HiSeq 2000 (Mustela putorius furo)

organism: Mustela putorius furo


title: Illumina HiSeq 3000 (Aplysia californica)

organism: Aplysia californica


title: Illumina HiSeq 2000 (Chlorella sorokiniana)

status: Public on Oct 20 2017

organism: Chlorella sorokiniana


title: Illumina HiSeq 2000 (Xanthomonas campestris pv. campestris)

organism: Xanthomonas campestris pv. campestris


title: Illumina HiSeq 2500 (Pan paniscus; Saimiri sciureus)

status: Public on Oct 19 2017

organism:
Saimiri sciureus
Pan paniscus


title: nCounter SC Human Immunology V2

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Homo sapiens

technology: other


title: Illumina HiSeq 2500 (Saimiri sciureus)

organism: Saimiri sciureus


title: Illumina HiSeq 2500 (Gorilla gorilla; Pongo abelii)

organism:
Gorilla gorilla
Pongo abelii


title: Illumina HiSeq 2500 (Homo sapiens; Papio anubis)

organism:
Papio anubis
Homo sapiens


title: Illumina HiSeq 2500 (Pan paniscus)

organism: Pan paniscus


title: Illumina HiSeq 2500 (Macaca mulatta; Mus musculus)

organism:
Macaca mulatta
Mus musculus


title: Illumina HiSeq 2500 (Fusarium oxysporum)

organism: Fusarium oxysporum


title: Illumina HiSeq 2500 (Leucoraja erinacea)

organism: Leucoraja erinaceus


title: Illumina HiSeq 2500 (Gorilla gorilla)

organism: Gorilla gorilla


title: Illumina HiSeq 2500 (Pongo abelii)

organism: Pongo abelii


title: Agilent-070330 X. laevis Microarray Piprek

status: Public on Oct 18 2017

city: Krakow

first: Rafal

middle: P.

last: Piprek

address: Gronostajowa 9

department: Department of Comparative Anatomy

country: Poland

institute: Jagiellonian University

organism: Xenopus laevis

description:
Number of Microarrays per Slide:8
Percentage Filled by Selected Probe Groups:71.74%
Number of Slides:1
Number of Available Features:17798
Total Number of Features:62976
Number of User Controls:0
Number of Agilent Controls:1319
Total Percentage Filled:100%
Number of Features Occupied by Replicate Probes:0


title: NimbleGen design name 120223_DvH_Mm_11-11_JV Desulfovibrio vulgaris str. Hildenborough

city: Norman

first: Aifen

last: Zhou

state: OK

address: 101 David L. Boren Blvd

department: Microbiology & Plant Biology

institute: University of Oklahoma

organism: Nitratidesulfovibrio vulgaris str. Hildenborough

description:
NimbleGen design name 120223_DvH_Mm_11-11_JV. Each array contains 9616 gene-specific 65-mer probes with three probes per gene and six replicates per probe, negative control (1689 probes specific to thermophiles), and positive controls (1200 probes specific to 16S).
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf files are linked below as supplementary files.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Illumina NextSeq 500 (Heliconius himera)

status: Public on Oct 17 2017

organism: Heliconius himera


title: Illumina NextSeq 500 (Heliconius erato petiverana)

organism: Heliconius erato petiverana


title: Illumina NextSeq 500 (Heliconius erato lativitta)

organism: Heliconius erato lativitta


title: Illumina NextSeq 500 (Escherichia coli 042)

organism: Escherichia coli 042


title: Illumina HiSeq 4000 (Conidiobolus obscurus)

organism: Conidiobolus obscurus


title: Illumina HiSeq 2000 (Bolitoglossa ramosi)

organism: Bolitoglossa ramosi


title: Illumina NextSeq 500 (Vibrio harveyi NBRC 15634 = ATCC 14126)

organism: Vibrio harveyi NBRC 15634 = ATCC 14126 = KCTC 12724


title: Agilent-041084 Daphnia Magna

status: Public on Oct 15 2017

city: Gent

first: Jana

last: Asselman

address: Coupure Links 653 (Building F, 2nd floor)

country: Belgium

institute: Ghent University

organism: Daphnia magna

description:
Arrays of this design have barcodes that begin with 16041084 or 2541084.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2500 (Apis mellifera ligustica)

status: Public on Oct 16 2017

organism: Apis mellifera ligustica


title: Illumina HiSeq 4000 (Dichomitus squalens)

organism: Dichomitus squalens


title: Agilent-079303 ArrayXS-Mouse_V2 079025 [SystematicName version]

city: Berlin

first: Ria

last: Göttert

address: Charitéplatz 1

department: experimental Neurology

institute: Charité

organism: Mus musculus

description:
ArrayXS Microarray, Valid Proof Certified, experimentally validated by OakLabs' MyArray strategy, validated for LIQA and LIQA WT labeling kit

Arrays of this design have barcodes that begin with 16079303 or 2579303.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent SystematicName.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

The ID column includes the Agilent SystematicName. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL24083.


title: Illumina HiSeq 2500 (Shewanella oneidensis)

status: Public on Oct 13 2017

organism: Shewanella oneidensis


title: Illumina Infinium Multi-Ethnic Global-8 v1.0 Array

organism: Homo sapiens

technology: oligonucleotide beads

distribution: commercial

manufacture_protocol: See manufacturer's website


title: Illumina HiSeq 2500 (Canis lupus familiaris; Homo sapiens; Mus musculus)

organism:
Homo sapiens
Canis lupus familiaris
Mus musculus


title: Illumina HiSeq 4000 (Bacillus subtilis subsp. subtilis str. 168)


title: Illumina HiSeq 4000 (Paralichthys olivaceus)

status: Public on Oct 12 2017

organism: Paralichthys olivaceus


title: Illumina HiSeq 3000 (Corbicula fluminea)

organism: Corbicula fluminea


title: HiSeq X Ten (Solanum lycopersicum)

organism: Solanum lycopersicum


title: Illumina HiSeq 2500 (Ettlia oleoabundans)

status: Public on Oct 11 2017

organism: Ettlia oleoabundans


title: Illumina HiSeq 2500 (Volvox carteri)

organism: Volvox carteri


title: Agilent-022386 Vibrio cholerae Array [Probe name version]

city: bhubaneswar

first: Durg

middle: Vijai

last: Singh

state: odisha

address: nalco square

department: infectious biology division

institute: institute of life sciences

organism: Vibrio cholerae


title: Illumina NextSeq 500 (Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium)

status: Public on Oct 10 2017

organism:
Mus musculus
Salmonella enterica subsp. enterica serovar Typhimurium


title: Illumina HiSeq 2000 (Pachycereus pringlei)

organism: Pachycereus pringlei


title: [HG-U133A] Affymetrix Human Genome U133A Array (HGU133A Hs ENTREZG 19.0.0)

description: Brainarray: HGU133A_Hs_ENTREZG_19.0.0

manufacture_protocol: See manufacturer's web site (www.affymetrix.com)


title: Illumina NextSeq 500 (Acinetobacter baumannii ATCC 17978)

status: Public on Oct 09 2017

organism: Acinetobacter baumannii ATCC 17978


title: [MoGene-2_1-st] Affymetrix Mouse Gene 2.1 ST Array [CDF: mogene21st_Mm_ENTREZG_22.0.0]

description: This array is identical to GPL17400 but the data were analyzed with a custom CDF environment.

relation: Alternative to: GPL17400 (Alternative CDF [official])

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2000 (Streptomyces clavuligerus)

organism: Streptomyces clavuligerus


title: Illumina HiSeq 2500 (Emberiza melanocephala)

organism: Emberiza melanocephala


title: Illumina MiSeq (Litopenaeus vannamei)

status: Public on Oct 08 2017

organism: Penaeus vannamei


title: Illumina HiSeq 2000 (Burkholderia pseudomallei)

organism: Burkholderia pseudomallei


title: Agilent-031184 Unrestricted Mouse miRNA V21 Microarray (miRNA version)

organism: Mus musculus

description: Based on miRBase V21.

relation: Alternative to: GPL23897 (Feature Number version)

relation: Alternative to: GPL24099 (miRNA version Grid_Date 16-Jan-2013)

manufacture_protocol: See manufacturer's web site (www.agilent.com).


title: Agilent-079303 ArrayXS-Mouse_V2 079025 (Feature number version)

status: Public on Oct 06 2017

city: Hennigsdorf

first: Martina

last: Schad

address: Neuendorfstrasse 16b

institute: OakLabs GmbH

description:
ArrayXS Microarray, Valid Proof Certified, experimentally validated by OakLabs' MyArray strategy, validated for LIQA and LIQA WT labeling kit

Arrays of this design have barcodes that begin with 16079303 or 2579303.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

The provided SEQUENCE is only a subset of at least 30 nucleotides of the sequence in the design (this is a kind of copy protection).

A different version of this platform with the Agilent SystematicName in the ID column is assigned accession number GPL24125.


title: Illumina HiSeq 2500 (Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)

last: GEO

organism:
Mus musculus
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344


title: Illumina HiSeq 2500 (Olea europaea)

organism: Olea europaea


title: Agilent-031184 Unrestricted Mouse miRNA V21 Microarray (miRNA version Grid_Date 16-Jan-2013)


title: Illumina HiSeq 4000 (Cynoglossus semilaevis)

organism: Cynoglossus semilaevis


title: Illumina HiSeq 2500 (Spinacia oleracea)

organism: Spinacia oleracea


title: Illumina HiSeq 2500 (Homo sapiens; Human gammaherpesvirus 8)

organism:
Homo sapiens
Human gammaherpesvirus 8


title: Illumina HiSeq 2000 (Zygosaccharomyces parabailii)

status: Public on Oct 05 2017

organism: Zygosaccharomyces parabailii


title: Illumina HiSeq 2500 (Daucus carota)

organism: Daucus carota


title: Illumina HiSeq 2500 (Theobroma cacao)

organism: Theobroma cacao


title: Agilent-028279 Rat 8X60K Custom Expression Array (Probe name version)

status: Public on Oct 04 2017

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

organism: Rattus norvegicus

description: Agilent's Rat Gene Expression  8x60k Array (AMADID: 028279)


title: Agilent-034745 Streptomyces tsukubensis NRRL18488 microarray version 2 (StsuMIMA2)

city: León

first: Antonio

last: Rodríguez-García

address: Avenida Real 1

institute: INBIOTEC

organism: Streptomyces tsukubensis NRRL18488

description: The locus tags indicated correspond to the protein coding genes as annotated in the GenBank assembly accession GCA_000297155.1


title: Illumina HiSeq 2000 (Viburnum macrocephalum f. keteleeri)

organism: Viburnum macrocephalum f. keteleeri


title: Illumina HiSeq 2500 (Viburnum macrocephalum f. keteleeri)


title: Illumina HiSeq 2500 (Vitis vinifera subsp. sylvestris)

organism: Vitis vinifera subsp. sylvestris


title: [CHOGene-2_1] GeneChip Chinese hamster ovary (CHO) Gene 2.1 ST Array [transcript (gene) version]

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

organism: Cricetulus griseus

description:
Annotation file: CHOGene-2_1-st-v1.na36.crigri1.transcript.csv

#%chip_type=CHOGene-2_1-st-v1
#%lib_set_name=CHOGene-2_1-st
#%lib_set_version=v1
#%genome-version=crigri1
#%genome-version-ucsc=crigri1
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-version-ucsc=crigri1
#%netaffx-annotation-date=2016-03-15
#%netaffx-annotation-netaffx-build=36

manufacture_protocol: See manufacturer's web site


title: Illumina HiSeq 1500 (Klebsormidium nitens)

status: Public on Oct 02 2017

organism: Klebsormidium nitens


title: Illumina HiSeq 2000 (Verticillium dahliae)

organism: Verticillium dahliae


title: Illumina HiSeq 1500 (Symbiodinium sp. clade B)

organism: Symbiodinium sp. clade B


title: Illumina NextSeq 500 (Escherichia virus Lambda)

organism: Lambdavirus lambda


title: Ion Torrent PGM ([Candida] glabrata)

organism: Nakaseomyces glabratus


title: Illumina HiSeq 4000 (Zea mays)

status: Public on Oct 23 2017

organism: Zea mays


title: Illumina HiSeq 1500 (Symbiodinium kawagutii)

organism: Symbiodinium kawagutii


title: Agilent-013812 Soybean Microarray

status: Public on Oct 01 2017

city: Yokohama

first: Akihiro

last: Matsui

state: Kanagawa

address: 1-7-22 Suehiro-cho, Tsurumi-ku

department: Center for Sustainable Resource Science

country: Japan

institute: RIKEN

organism: Glycine max


title: Agilent Custom Whole Genome Escherichia coli 8x15K (AMADID: 019439) designed  by Genotypic Technology Private Limited.

organism: Escherichia coli


title: 2006-10-26_MMUS5_60mer

city: Bronx

first: Maureen

middle: J

last: Charron

state: NY

address: 1300 Morris Park Ave

department: Biochemistry

institute: Albert Einstein College of Medicine

organism: Mus musculus

description: NimbleGen description file(s) linked below:

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Cancer Epigenetics Laoratory Human 40 gene prostate cancer PCR assay panel.

city: Sydney

first: Hugh

middle: John

last: French

state: New South Wales

address: UNSW

country: Australia

institute: UNSW

organism: Homo sapiens

manufacturer: Cancer Epigenetics Laoratory, Garvan Institute, Australia.

manufacture_protocol: manufacture protocol


title: Ion Torrent Proton (Lactococcus lactis subsp. cremoris)

organism: Lactococcus cremoris


title: AE_Mouse_HD2_HELP array

description:
Annotation in this record based on NCBI mouse build 36/mm8
Genomic regions representing >0.8 million loci genome-wide, representing each HpaII-amplifiable fragment from 50 – 2,000 bp with 1-2 oligonucleotides encoding unique sequence at each locus


title: Agilent-031184 Unrestricted Mouse miRNA V21 Microarray (Feature Number version)

status: Public on Aug 10 2017

description: Based on miRBase V21.

relation: Alternative to: GPL24098 (miRNA version)


title: Illumina NextSeq 500 (Bacillus subtilis)

organism: Bacillus subtilis


title: [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array (HGU133A2 Hs ENTREZG 19.0.0)

status: Public on Feb 19 2017

description: Brainarray: HGU133A2_Hs_ENTREZG_19.0.0


title: Illumina HiSeq 2500 (Phyllostachys edulis)

status: Public on Nov 25 2016

organism: Phyllostachys edulis


title: Illumina MiSeq (feces metagenome)

organism: feces metagenome


title: Illumina NextSeq 500 (Aspergillus niger)

status: Public on May 06 2016

organism: Aspergillus niger


title: Agilent-031184 Unrestricted_Mouse_miRNA_V16.0_Microarray 030835 (miRNA_ID version)

status: Public on Mar 09 2013

city: Harbin

first: yanqiao

last: zhang

state: Heilongjiang

address: Haping Road # 150, Nangang District,Harbin, Heilongjiang Province, P. R. China

institute: Harbin Medical University Cancer Hospital

description:
all mouse and mouse viral miRNAs

Arrays of this design have barcodes that begin with 16031184 or 2531184.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 4000 (Tetrahymena thermophila)

status: Public on Feb 04 2016

organism: Tetrahymena thermophila


title: Illumina Genome Analyzer IIx (Schizosaccharomyces pombe)

status: Public on Jan 27 2012

organism: Schizosaccharomyces pombe


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG_v19]

status: Public on Jun 14 2017

description: This array is identical to GPL570 but the data were analyzed with a custom CDF environment.

manufacture_protocol: Refer to Affymetrix manufacture protocol for HG-U133 Plus 2.0 array


title: [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [mogene20st_Mm_ENTREZG_18.0.0]

status: Public on Aug 21 2014

description: This Platform is identical to GPL16570 but a custom CDF environment was used to extract data [Brainarray Version 18, mogene20st]. CDF and other files can be downloaded using the supplementary file links at the bottom of this record or at http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/18.0.0/entrezg.asp .

relation: Alternative to: GPL16570 (Alternative CDF [official])

manufacture_protocol: See manufacturer's website (www.affymetrix.com).


title: MinION (Homo sapiens)

status: Public on Oct 10 2017