title: Illumina NextSeq 500 (Anas platyrhynchos)

status: Public on Jan 31 2018

last: GEO

country: USA

organism: Anas platyrhynchos

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 4000 (Haberlea rhodopensis)

organism: Haberlea rhodopensis


title: Exiqon MIRCURY LNA microRNA Array, 7th generation, miRbase version 19.0, Lot: 35039.41

city: Genoa

first: Alberto

last: Izzotti

address: Via A. Pastore 1

country: Italy

institute: University of Genoa

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

technology: spotted oligonucleotide

distribution: custom-commercial

manufacturer: miRCURY LNATM microRNA Array (Exiqon), miRbase version 19.0, Lot: 35039.41

manufacture_protocol: the 7th generation miRCURY LNATM microRNA Array (Exiqon), which contains 3100 capture probes covering human, mouse, and rat miRNAs.


title: TaqMan® human microRNA A/B Plates

city: Beijing

first: Qian

last: Jiang

state: Beijing

address: No.56 Nanlishi Road Xicheng District Beijing

department: Hematology Oncology Centre

country: China

institute: Beijing Childrens' Hospital Capital Medical University

organism: Homo sapiens

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 2500 (Flavobacterium columnare)

organism: Flavobacterium columnare


title: Illumina NextSeq 500 (Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759)

status: Public on Jan 30 2018


title: Illumina HiSeq 2500 (Ginkgo biloba)

organism: Ginkgo biloba


title: Illumina NextSeq 500 (Escherichia coli Nissle 1917)

organism: Escherichia coli Nissle 1917


title: Illumina HiSeq 2000 (Hololachna songarica)

status: Public on Jan 26 2018

organism: Reaumuria songarica


title: RT-qPCR immune response genes and epigenetic factors

status: Public on Jan 27 2018

city: colombo

first: Aruna Dharshan

last: De Silva

address: Kandawala Road, Ratmalana

country: Sri Lanka

institute: Kotelawala Defense University

manufacture_protocol: In house method


title: Illumina HiSeq 2500 (Felis catus)

status: Public on Jan 29 2018

organism: Felis catus


title: Agilent-044371 StrPneTIGR4R6 v1

city: Cordoba

first: Antonio

middle: Rodriguez

last: Franco

state: CORDOBA

address: Rabanales. Ed Severo Ochoa

department: Bioquímica y Biología Molecular

country: Spain

institute: Universidad de Córdoba

organism: Streptococcus pneumoniae TIGR4

technology: in situ oligonucleotide

description:
Arrays of this design have barcodes that begin with 16044371 or 2544371.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 4000 (Anguilla anguilla)

organism: Anguilla anguilla


title: Illumina HiSeq 2500 (Aphanomyces euteiches)

status: Public on Jan 23 2018

organism: Aphanomyces euteiches


title: Agilent-038112 mouse miRNA microarray, Release 18.0 (Probe ID version)

city: Palo Alto

last: Agilent Technologies

state: CA

institute: Agilent Technologies

organism: Mus musculus

description:
Arrays of this design have barcodes that begin with 16038112 or 2538112.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: commercial


title: Illumina HiSeq 4000 (Streptococcus agalactiae A909)

status: Public on Jan 25 2018

organism: Streptococcus agalactiae A909


title: Agilent-082410 Mouse RR_CGH_60k_plus_030316 (Feature Number version)

city: Munich

first: Roland

last: Rad

state: Bavaria

address: Ismaninger Str. 22

country: Germany

institute: Center for Translational Cancer Research (TranslaTUM)

description:
G4126A

Arrays of this design have barcodes that begin with 16082410 or 2582410.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 1000 (Tetraselmis suecica)

status: Public on Jan 19 2018

organism: Tetraselmis suecica


title: [HuGene-2_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: hugene20st_Hs_ENTREZG, Brainarray version 22]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: This is identical to GPL6244  but a custom CDF environment was used to extract data [Brainarray Version 22, hugene20st_22 ]. CDF and other files can be downloaded at web link below.

manufacture_protocol: See manufacturer's web site


title: TIGR Aspergillus fumigatus Af293 array, version 4

city: Villamayor

first: Marta

last: Montero-Barrientos

state: Salamanca

address: Río Duero 12

institute: CENIT SUPPORT SYSTEMS

organism: Aspergillus fumigatus

distribution: non-commercial

manufacture_protocol: The Pathogen Functional Genomics Resource Center at TIGR recommends its protocols for the preparation and hybridization of labeled cDNA probes for use on microbial arrays. These protocols are available at http://pfgrc.tigr.org/protocols.shtml


title: Illumina HiSeq 2500 (Ustilago maydis)

status: Public on Jan 24 2018

organism: Mycosarcoma maydis


title: Illumina NextSeq 500 (Rosa chinensis)

organism: Rosa chinensis


title: Arraystar Human LncRNA microarray V2.0 (Agilent-033010; custom-annotation; probe name version)

city: Frankfurt

first: Jan-Henning

last: Klusmann

address: Theodor-Stern-Kai 7

department: Pediatric Hematology and Oncology

institute: Goehte University Frankfurt

description:
This annotation was obtained by direct matching of the probeseqs of the Arraystar Human LncRNA microarray V2.0 (Agilent-033010) [GPL13825] to the human transcriptome (Gencode.V23) and is more accurate than the original annotation issued by the manufacturer.

ArrayStar Human LncRNA Microarray V2.0 is designed for the global profiling of human LncRNAs and protein-coding transcripts. 33,045 LncRNAs and 30,215 coding transcripts can be detected by our second-generation LncRNA microarray. The LncRNAs are carefully collected from the most authoritative databases such as RefSeq, UCSC knowngenes, Ensembl and many related literatures. Each transcript is represented by a specific exon or splice junction probe which can identify individual transcript accurately. Positive probes for housekeeping genes and negative probes are also printed onto the array for hybridization quality control.


title: IRHS_Ca_102K_v1 [121106_Caus_SP]

status: Public on Jan 17 2018

city: BEAUCOUZE

first: Sandra

last: Pelletier

address: 42, rue Georges Morel - BP 60057

country: France

institute: INRA

organism: Castanospermum australe

description:
A dataset of 96250 quality-filtered unigenes were submitted for probe design and production of the high-density microarray. One oligoprobe was selected for each sequence, based on highest hybridization specificity. Each specific oligoprobe was printing in foward and reverse sense.
Each probe were spotting in forward and reverse

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/


title: Illumina HiSeq 2000 (Paulownia tomentosa)

organism: Paulownia tomentosa


title: [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: hugene10st_Hs_ENTREZG, Brainarray version 22]

organism: Homo sapiens

description: This is identical to GPL6244  but a custom CDF environment was used to extract data [Brainarray Version 22, hugene10st_22 ]. CDF and other files can be downloaded at web link below.


title: HiSeq X Ten (Cucumis sativus)

organism: Cucumis sativus


title: NanoString nCounter custom lympho-myeloid gene set (150)

city: Pittsburgh

first: Lisa

middle: Ann

last: Borghesi

state: PA

address: 200 Lothrop ST

department: Immunology

institute: University of Pittsburgh

technology: other


title: [Zebrafish] Affymetrix Zebrafish Genome Array [CDF: Brainarray Entrez Gene CDF version 14.0.0]

organism: Danio rerio

description:
This array is identical to GPL1319 but the data were analyzed with a custom CDF environment.

This array contains all probe sets listed in the file GPL24541_Zebrafish_Dr_ENTREZG_desc.txt.gz and 115 AFFX controls included in the file GPL24541_Zebrafish_Dr_ENTREZG_probe_tab.txt.gz.

relation: Alternative to: GPL1319 (official version)

manufacture_protocol: see manufacturer's web site.


title: Illumina NextSeq 500 (Oncopeltus fasciatus)

status: Public on Jan 15 2018

organism: Oncopeltus fasciatus


title: Agilent-082410 Mouse RR_CGH_60k_plus_030316 (Probe Name version)


title: Agilent-027044 Marsden Lab 1M array

city: Toronto

first: Philip

middle: A

last: Marsden

address: 209 Victoria Street, Room 522

department: Medicine

country: Canada

institute: University of Toronto


title: Illumina HiScanSQ (synthetic construct)

organism: synthetic construct


title: Illumina NextSeq 500 (Caulobacter vibrioides)

organism: Caulobacter vibrioides


title: [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [CDF: mogene20st_Mm_ENTREZG_22]

description: This Platform is identical to GPL16570 but a custom CDF environment was used to extract data [Brainarray Version 22, mogene20st]. The CDF file can be downloaded using the supplementary file link at the bottom of this record; the CDF and other files can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp#v22

manufacture_protocol: See manufacturer's website (www.affymetrix.com).


title: Ion Torrent PGM (Shewanella algae)

status: Public on Jan 12 2018

organism: Shewanella algae


title: [Zebrafish] Affymetrix Zebrafish Genome Array

status: Public on Jul 01 2004

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The Affymetrix GeneChip Zebrafish Genome Array can be used to study gene expression of over 14,900 Danio rerio transcripts. Sequence information for this array was selected from the following public data sources: RefSeq (July 2003), GenBank (release 136.0, June 2003), dbEST (July 2003), and UniGene (Build 54, June 2003). Probe sets on the array were designed with 16 oligonucleotide pairs to detect each transcript.

This array was designed in collaboration with representative members of the Zebrafish community and the National Institutes of Health.

Note: The DsRed probe set is provided with permission from BD Biosciences, and BD Biosciences grants users a limited license to utilize this probe set only on the Affymetrix array. Other uses of the probe set, or other DsRed sequence or sequences requires a license from BD Biosciences.

Annotations derived from Affymetrix CSV file dated 6/23/2004

relation: Alternative to: GPL24541 (alternative CDF [Zebrafish_Dr_ENTREZG, Brainarray version 14.0.0])


title: Carlson/FDA - Clostridium difficile 630 - 15k

status: Public on Jan 14 2018

city: Silver Spring

first: Paul

last: Carlson

address: 10903 New Hampshire Ave

department: DBPAP

institute: Food and Drug Administration

organism: Clostridioides difficile

manufacture_protocol: All protocols followed manufacturer's instructions for agilent prokaryotic cRNA kit.  Scanning was performed on an Agilent scanner


title: Illumina HiSeq 2500 (Ramularia collo-cygni)

organism: Ramularia collo-cygni


title: HiSeq X Ten (Mycobacterium smegmatis str. MC2 155)

organism: Mycolicibacterium smegmatis MC2 155


title: Agilent-084215 IRFpbm_v2_080216  G4125A [Probe name version]

city: Boston

first: Trevor

last: Siggers

state: MA

address: 24 Cummington Mall

department: Department of Biology

institute: Boston University

description:
IRF Custom PBM Version 2 - designed by Kellen Andrilenas

Arrays of this design have barcodes that begin with 16084215 or 2584215

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.


title: Bowen BC016 oligo array

status: Public on Jan 13 2018

city: Nahant

first: Jennifer

last: Bowen

state: Massachusetts

address: 430 Nahant Rd.

department: Marine and Environmental Sciences

institute: Northeastern University

organism: uncultured bacterium

manufacture_protocol:
1.The probe oligonucleotides are printed onto Corning Ultragaps or Erie Scientific Epoxy Silane slides using a DeRisi style arrayer (DiRisi et al., 1997) and pins from Parallel Synthesis.
2.The 70-mer oligo probes (Operon Technologies) were adjusted to a concentration of 0.05 mg ml-1 in 50%  DMSO and were spotted on CMT-GAPS amino silane-coated  glass slides (Corning, Corning, NY).
3. After printing, the slides were stored in the dark at room temperature under slight vacuum in a dessicator. They were UV irradiated before hybridization,


title: Illumina HiSeq 2500 (Ophthalmotilapia ventralis)

status: Public on Jan 11 2018

last: GEO

organism: Ophthalmotilapia ventralis


title: Illumina HiSeq 2500 (Ophthalmotilapia nasuta)

organism: Ophthalmotilapia nasuta


title: [Clariom_D_Human] Affymetrix Human Clariom D Assay [probe set (exon) version]

description:
Annotation was derived from the Affymetrix annotation file Clariom_D_Human.na36.hg38.probeset.csv:

#%create_date=Tue Jun 21 09:09:16 2016 PST
#%chip_type=Clariom_D_Human
#%lib_set_name=Clariom_D_Human
#%lib_set_version=r1
#%genome-species=Homo sapiens
#%genome-version=hg38
#%genome-version-ucsc=hg38
#%genome-version-ncbi=GRCh38
#%genome-version-create_date=2013-12-01
#%netaffx-annotation-date=2016-03-15
#%netaffx-annotation-netaffx-build=36

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 2000 (Vitis riparia)

organism: Vitis riparia


title: Illumina HiSeq 2500 (Fusarium graminearum)

organism: Fusarium graminearum


title: Illumina HiSeq 2500 (Astyanax mexicanus)

status: Public on Jan 10 2018

organism: Astyanax mexicanus


title: Illumina HiSeq 4000 (Fusarium graminearum)


title: Illumina NextSeq 500 (Candida parapsilosis)

organism: Candida parapsilosis


title: Illumina HiSeq 2000 (Anopheles sinensis)

organism: Anopheles sinensis


title: Illumina HiSeq 2500 (Cenococcum geophilum 1.58)

status: Public on Jan 05 2018

organism: Cenococcum geophilum 1.58


title: Illumina HiSeq 3000 (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: HiSeq X Ten (Gallus gallus)

status: Public on Jan 16 2018

organism: Gallus gallus


title: Illumina HiSeq 2500 (Bacillus anthracis str. Ames)

status: Public on Jan 09 2018

organism: Bacillus anthracis str. Ames


title: Illumina HiSeq 2000 (Zymomonas mobilis subsp. mobilis)

status: Public on Jan 08 2018

organism: Zymomonas mobilis subsp. mobilis


title: Illumina HiSeq 2500 (Lactobacillus paracasei)

status: Public on Jan 03 2018

organism: Lacticaseibacillus paracasei


title: Illumina HiSeq 2500 (Rousettus aegyptiacus)

organism: Rousettus aegyptiacus


title: PacBio RS II (Oryza sativa)

status: Public on Jan 04 2018

organism: Oryza sativa


title: Illumina HiSeq 2500 (Candida parapsilosis)


title: Illumina HiSeq 2000 (Cenococcum geophilum 1.58)


title: Illumina HiSeq 2500 (Cenococcum geophilum 1.58; Pinus sylvestris)

organism:
Pinus sylvestris
Cenococcum geophilum 1.58


title: HiSeq X Ten (Citrus maxima)

status: Public on Jan 07 2018

organism: Citrus maxima


title: PacBio RS II (Escherichia coli)

organism: Escherichia coli


title: HiSeq X Ten (Citrus sinensis)

organism: Citrus sinensis


title: Ion Torrent Proton (Mesorhizobium ciceri biovar biserrulae WSM1271)


title: Illumina NextSeq 500 (Clostridium autoethanogenum)

organism: Clostridium autoethanogenum


title: Ion Torrent Proton (Bacillus amyloliquefaciens)

status: Public on Jan 02 2018

organism: Bacillus amyloliquefaciens


title: Illumina Genome Analyzer IIx (Cucumis sativus var. sativus)

organism: Cucumis sativus var. sativus


title: Illumina HiSeq 3000 (feces metagenome)

organism: feces metagenome


title: HiSeq X Ten (Neurospora crassa)

organism: Neurospora crassa


title: Illumina HiSeq 4000 (Pseudomonas donghuensis)

organism: Pseudomonas donghuensis


title: Ion Torrent Proton (Macaca mulatta)

organism: Macaca mulatta


title: AB 5500 Genetic Analyzer (Bradyrhizobium sp. ORS 285)

organism: Bradyrhizobium sp. ORS 285


title: Illumina HiSeq 2000 (Agrobacterium fabrum str. C58)

organism: Agrobacterium fabrum str. C58


title: [Bfragilis] Affymetrix Bacteroides fragilis Array

status: Public on Jan 01 2018

city: Rio de Janeiro

first: Felipe

middle: Lopes

last: Teixeira

state: Rio de Janeiro

address: Av. Carlos Chagas Filho 373

department: Microbiologia Médica

country: Brazil

institute: Universidade Federal do Rio de Janeiro

organism: Bacteroides fragilis

manufacture_protocol: Affymetrix


title: NimbleGen Mouse Tiling Array [110404_MM9_BH_ChIP]

city: Edinburgh

first: Graeme

middle: Richard

last: Grimes

address: Western General Hospital, Crewe Road

department: Human Genetics Unit

country: United Kingdom

institute: University of Edinburgh, The Institute of Genetics and Cancer

organism: Mus musculus

description:
Genome build: mm9
NimbleGen description file: 110404_MM9_BH_ChIP.ndf
NimbleGen description file: 110404_MM9_BH_ChIP.pos
NimbleGen description file: 110404_MM9_BH_ChIP_HX3.ncd
NimbleGen description file: 110404_MM9_BH_ChIP.gff
NimbleGen description file: 110404_MM9_BH_ChIP_probe_locations.gff
DESIGN_ID: 550801
DESIGN_NAME: 110404_MM9_BH_ChIP

manufacture_protocol: see manufacturer's website http://www.roche.com


title: Agilent-limb_060776 custom mouse array

description: Array design based on mm9.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Homo sapiens microRNA array

city: Guangzhou

first: jingye

last: hu

address: 651 Dongfeng East Road

institute: Sun Yat-sen University Cancer Center

organism: Homo sapiens

manufacturer: State Key Laboratory of Oncology in South China,Sun Yat-sen University

manufacture_protocol: 1888 microRNA probes were printed onto slides using the SmartArrayerTM 136 printer (CapitalBio,Inc.,Beijing,China)


title: Agilent-083010 Mouse custom E-array

city: Gwangju

first: Seonghyeon

last: Hong

address: 123 Cheomdangwagi-ro, Buk-gu, Gwangju, 61005, Korea

department: School of Life Science

country: South Korea

institute: GIST

manufacture_protocol: see Agilent


title: Illumina HiSeq 3000 (Sus scrofa)

organism: Sus scrofa


title: [miRNA-4] Affymetrix Multispecies miRNA-4 Array [Brain Array V21]

status: Public on Dec 30 2017

city: Paris

first: Céline

last: Méhats

address: 24 rue du Faubourg St jacques

institute: Inserm

organism: synthetic construct


title: Valencia yeast v11

status: Public on Dec 12 2017

city: Burjassot

first: Jose

middle: E.

last: Perez-Ortin

state: Valencia

address: Dr. Moliner 50

department: Bioquimica y Biologia Molecular

institute: Universitat de Valencia

organism: Saccharomyces cerevisiae

technology: spotted DNA/cDNA

manufacture_protocol: See Alberola et al. (2004), International Microbiology 7:199-206 (PMID 15492934).


title: Agilent-073391 MicroTOOLs_171K_oligo_v2.0

city: Santa Cruz

first: Jonathan

middle: David

last: Magasin

address: 1156 High Street

department: Ocean Sciences

institute: UC Santa Cruz

organism: uncultured marine microorganism

description:
MicroTOOLs v2.0 is based on the original platform (GPL16706) described in Shilova et al. (2014).  However, v2.0 is an Agilent platform (Agilent-073391). It also has some additional targets and updated taxonomic annotation, based on sequences added to reference databases since the original platform.  Additionally, a software pipeline was developed for analyzing MicroTOOLs microarrays and is available at https://www.jzehrlab.com/microtools
The probe sequences are provided in the file MicroTOOLs_171K_oligo_v2.0_probes.txt available at the foot of this page.

first: Irina

middle: N

last: Shilova

first: Julie

last: Robidart

first: Harry

middle: J

last: Tripp

first: Kendra

last: Turk-Kubo

first: Boris

last: Wawrik

first: Mahdi

last: Belcaid

first: Shellie

middle: R

last: Bench

first: Dreux

last: Chapell

first: Jackie

last: Collier

first: Chris

last: Francis

first: Scott

last: Gifford

first: Jana

last: Grote

last: Heller

first: James

middle: T

last: Hollibaugh

first: Bethany

last: Jenkins

last: LaRoche

first: Andy

last: Millard

last: Moran

first: Annika

last: Mosier

first: Martin

last: Ostrowski

first: Ryan

last: Paerl

first: Micaela

last: Parker

first: Anton

last: Post

first: David

last: Scanlan

first: Holly

last: Simon

first: Mariya

last: Smit

first: Rhona

last: Stuart

first: Anne

middle: W

last: Thompson

first: Bess

last: Ward

first: Jody

last: Wright

first: Loui

last: Wurch

middle: P

last: Zehr

manufacture_protocol: Probe genes were selected using known molecular markers and metagenomic data, and oligonucleotide probes were designed using Agilent eArray design software.  Microarray manufacture protocol described at http://www.agilent.com


title: Agilent-084107 048306On1M_V3 082895 [PROBE NAME VERSION]

status: Public on Nov 04 2017

city: Hannover

first: Oliver

last: Dittrich-Breiholz

address: Carl-Neuberg-Str. 1

department: Research Core Unit Genomics

institute: Medical School Hannover

description:
This platform for Agilent Design ID 084107 represents a refined version of the Agilent Whole Mouse Genome Oligo Microarray 4x44K v2 (Design ID 026655) comprised of all probes of this array in quadruplicates, but a different number of custom control probes. ID-084107 (048306On1M_V3) was developed by RCUG, using a 1x1M design format. All non-control probes of design ID 026655 were printed four times within a region comprising a total of 181560 Features. Four of such regions were placed within one 1M region.

Arrays of this design have barcodes that begin with 16084107 or 2584107.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2500 (Mycobacterium smegmatis)

status: Public on Nov 10 2016

last: GEO

organism: Mycolicibacterium smegmatis


title: Illumina HiSeq 2500 (Escherichia coli BW25113)

status: Public on May 20 2015

organism: Escherichia coli BW25113


title: Illumina NextSeq 500 (Mesocricetus auratus)

organism: Mesocricetus auratus


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [CDF: hta20_Hs_ENTREZG, Brainarray version 20.0.0]

status: Public on Nov 22 2017

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: This array is identical to GPL17586 but the data were analyzed with a custom CDF environment.

relation: Alternative to: GPL17586 (Alternative CDF [official])

manufacture_protocol: See manufacturer's web site.


title: Illumina NextSeq 500 (Nematostella vectensis)

status: Public on Feb 06 2017

organism: Nematostella vectensis


title: Agilent-048306 026655AsQuadruplicatesOn4x180K 048295 [Probe Name version]

status: Public on Mar 17 2015

description:
This Microarray represents a refined version of the Whole Mouse Genome Oligo Microarray 4x44K v2 (Design ID 026655, Agilent Technologies), called '026655AsQuadruplicatesOn180k' (design ID 048306) developed at the Research Core Unit Transcriptomics of Hannover Medical School. Microarray design was defined at Agilent's eArray portal using a 4x180K design format for mRNA expression as template. All non-control probes of design ID 026655 have been selected to be printed four times onto one 180K Microarray (on-chip quadruplicates). Control probes required for proper Feature Extraction software algorithms were determined and placed automatically by eArray using recommended default settings.
Arrays of this design have barcodes that begin with 16048306 or 2548306.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Probe IDs.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation:
Alternative to: GPL18785
Affiliated with: GPL10333


title: Agilent-019119 Mouse miRNA Microarray 1.0 G4472A (miRNA ID version)

status: Public on Jul 24 2009

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

description: Agilent 8x15K mouse miRNA microarray

first: Di

last: Yu

first: Louis

middle: M

last: Tsai

first: Charles

last: Mackay

first: Carola

middle: G

last: Vinuesa

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2500 (Nicotiana benthamiana)

status: Public on Jul 15 2013

organism: Nicotiana benthamiana


title: NNIIEM_Human_ApoArray_4х2k_v2.0

status: Public on Feb 22 2017

city: Nizhny Novgorod

first: Dmitry

last: Knyazev

address: Malaya Yamskaya, 71

country: Russia

institute: I.N. Blokhina Nizhny Novgorod Research Institute of Epidemiology and Microbiology

description: NNIIEM; www.nniiem.ru

manufacturer: CustomArray Inc. CustomArray B3 Synthesizer


title: HiSeq X Ten (Oryza sativa)

organism: Oryza sativa


title: Agilent-026655 Whole Mouse Genome Microarray 4x44K v2 (Feature Number version)

status: Public on Apr 15 2010

description:
Mouse Content Refresh 44k

Arrays of this design have barcodes that begin with 16026655 or 2526655.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL11202.

relation: Alternative to: GPL20889 (Gene name version)


title: Agilent-070156 Human miRNA [miRNA version]

status: Public on Jul 21 2015

manufacture_protocol: see manufacturer's website


title: Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)

status: Public on Apr 26 2013

description:
SurePrint G3 Human GE v2 8x60K Microarray

Design ID: 039494
Design Format: 8 x 60 K
Control Grid: IS-62976-8-V2_60kby8_GX_EQC_201000210
Build Version: hg19:GRCh37:Feb2009

Arrays of this design have barcodes that begin with 16039494 or 2539494.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Names.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2500 (Bos taurus)

status: Public on Sep 09 2014

organism: Bos taurus


title: Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)

status: Public on May 05 2011

description: *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL10332.


title: Illumina NextSeq 500 (Caenorhabditis elegans)

status: Public on Feb 09 2015

organism: Caenorhabditis elegans