title: Agilent-021924 SurePrint G3 Human CGH Microarray 8x60K (Probe Name version, hg19:GRCh37:Feb2009)

status: Public on Mar 31 2018

city: Madrid

first: Silvana

last: Mouron

state: Madrid

address: Calle Melchor Fdez Almagro

department: Clinical Research

country: Spain

institute: CNIO

organism: Homo sapiens

technology: in situ oligonucleotide

description: Data table annotations based on hg19:GRCh37:Feb2009

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-034583 AG2011AC Anopheles gambiae

city: Baltimore

first: George

last: Dimopoulos

state: MD

address: 615 N Wolfe St.

department: Molecular Microbiology and Immunology

country: USA

institute: Johns Hopkins School of Public Health

organism: Anopheles gambiae

description:
Arrays of this design have barcodes that begin with 16034583 or 2534583.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 4000 (Streptomyces natalensis)

status: Public on Mar 30 2018

last: GEO

organism: Streptomyces natalensis

technology: high-throughput sequencing

distribution: virtual


title: Custom Arraystar Human LncRNA Array version 1 (12x 135K) [090618_HG18_JZ_exp]

city: Toronto

first: Philip

middle: A

last: Marsden

address: 209 Victoria Street, Room 522

department: Medicine

country: Canada

institute: University of Toronto

description: Custom Arraystar Human LncRNA Array version 1 (12x 135K, Arraystar)

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology.


title: [HT_MG-430_PM] Affymetrix HT MG-430 PM Array Plate [CDF: htmg430pmmmentrezgaltrabio142010.cdf]

city: Lyon

first: Simon

last: de Bernard

address: 30 rue Pré Gaudry

country: France

institute: AltraBio

organism: Mus musculus

description: This is an alternative CDF.

relation: Alternative to: GPL11180 (alternative CDF[official])

manufacture_protocol: see manufacturer's web site


title: Agilent-042835 AGPOA3.5

city: Tsukuba

first: Masaaki

last: Taniguchi

state: Ibaraki

address: 2 Ikenodai

department: Division of Animal Breeding and Reproduction Research

country: Japan

institute: Institute of Livestock and Grassland Science National Agriculture Food Research Organization

organism: Sus scrofa

description:
AGPOA3.2 + KGT03 probes

Arrays of this design have barcodes that begin with 16042835 or 2542835.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2500 (Nicotiana glauca)

organism: Nicotiana glauca


title: GeoChip 5.0

city: Lincoln

first: Paul

last: Maclean

address: Cnr Springs Road and Gerald Street

country: New Zealand

institute: AgResearch NZ LTD

organism:
Bacteria
Archaea
Eukaryota


title: Illumina HiSeq 2500 (Nicotiana bonariensis)

organism: Nicotiana bonariensis


title: Illumina HiSeq 2500 (Nicotiana rustica)

organism: Nicotiana rustica


title: Illumina HiSeq 2500 (Nicotiana plumbaginifolia)

organism: Nicotiana plumbaginifolia


title: Illumina HiSeq 2500 (Nicotiana clevelandii)

organism: Nicotiana clevelandii


title: [PaKpSmBta521148F] Affymetrix Multi-Species Custom Array

city: Burlington

first: Matthew

middle: J

last: Wargo

state: VT

address: 95 Carrigan Dr

department: Department of Microbiology and Molecular Genetics

institute: University of Vermont

organism:
Burkholderia thailandensis E264
Stenotrophomonas maltophilia K279a
Pseudomonas aeruginosa PA14
Klebsiella pneumoniae MGH 78578


title: AB 5500 Genetic Analyzer (Danio rerio)

status: Public on Mar 29 2018

organism: Danio rerio


title: Illumina HiSeq 2000 (Didelphis virginiana)

organism: Didelphis virginiana


title: Nanostring nCounter Pt_TFs Custom CodeSet

status: Public on May 23 2019

city: Paris

first: Angela

last: Falciatore

address: 15 rue de l'ecole de Medicine

department: UMR 7238, LCQB

institute: CNRS

organism: Phaeodactylum tricornutum

technology: other

manufacture_protocol: Refer to www.nanostring.com


title: Illumina HiSeq 4000 (Brassica oleracea)

organism: Brassica oleracea


title: Illumina HiSeq 2500 (Schizosaccharomyces octosporus)

status: Public on Mar 28 2018

organism: Schizosaccharomyces octosporus


title: Illumina HiSeq 2500 (Schizosaccharomyces cryophilus)

organism: Schizosaccharomyces cryophilus


title: Illumina HiSeq 4000 (Phaeodactylum tricornutum)


title: Illumina Genome Analyzer II (Schizosaccharomyces octosporus)


title: Illumina Genome Analyzer II (Schizosaccharomyces cryophilus)


title: Illumina MiSeq (Clostridioides difficile 630)

organism: Clostridioides difficile 630


title: Illumina HiSeq 2000 (Procambarus virginalis)

status: Public on Mar 27 2018

organism: Procambarus virginalis


title: Illumina NextSeq 500 (uncultured bacterium)

organism: uncultured bacterium


title: Illumina HiSeq 2500 (Spiroplasma poulsonii)

status: Public on Mar 23 2018

organism: Spiroplasma poulsonii


title: Illumina HiSeq 2500 (Salvia dorisiana)

organism: Salvia dorisiana


title: illumina HiSeq 2500 (Rhizophora mucronata)

status: Public on Mar 21 2018

organism: Rhizophora mucronata


title: HiSeq X Ten (Procambarus virginalis)


title: Illumina NextSeq 500 (Cyprinus carpio)

organism: Cyprinus carpio


title: Illumina HiSeq 2000 (Acipenser sinensis)

organism: Acipenser sinensis


title: Illumina HiSeq 4000 (Sinonovacula constricta)

status: Public on Mar 25 2018

organism: Sinonovacula constricta


title: Nanostring human miRNA panel (NS_H_MIR_V3A)

city: Columbus

first: Alessandra

last: Drusco

address: 460 W. 12th Ave.  Biological Research Tower 1094

department: Department of Cancer Biology and Genetics

institute: The Ohio State University

organism: Homo sapiens

manufacture_protocol: see manufacturer website


title: Illumina HiSeq 4000 (Rhodococcus rhodochrous)

status: Public on Mar 22 2018

organism: Rhodococcus rhodochrous


title: Compugen Human and virus oligo array 16K

status: Public on Mar 20 2018

city: Chapel Hill

first: Jennifer

last: Webster-Cyriaque

state: NC

address: 385 S. Columbia St.

department: Dental Research

institute: University of North Carolina at Chapel Hill

organism:
Homo sapiens
Human alphaherpesvirus 1
Human alphaherpesvirus 2
Human alphaherpesvirus 3
Human betaherpesvirus 6
Human betaherpesvirus 7
Cucumber mosaic virus
Human gammaherpesvirus 8
Simian-Human immunodeficiency virus
human papillomavirus 72

technology: spotted oligonucleotide

description:
only viral oligo sequences are available (human oligo sequences unavailable)
An 18k array (a later version of the same array with additional human genes) is GPL550.

distribution: non-commercial

manufacturer: Lineberger Comprehensive Cancer Center Genomics Core

manufacture_protocol: unavailable


title: Illumina HiSeq 2500 (Brassica rapa subsp. chinensis)

organism: Brassica rapa subsp. chinensis


title: Illumina HiSeq 2000 (Glutamicibacter arilaitensis)

organism: Glutamicibacter arilaitensis


title: Illumina HiSeq 2500 (Panicum virgatum)

organism: Panicum virgatum


title: Illumina NextSeq 500 (Petromyzon marinus)

organism: Petromyzon marinus


title: Illumina HiSeq 2500 (Vibrio vulnificus CMCP6)

status: Public on Mar 19 2018

organism: Vibrio vulnificus CMCP6


title: HiSeq X Ten (Streptococcus pneumoniae)

organism: Streptococcus pneumoniae


title: Illumina HiSeq 4000 (Fagopyrum tataricum)

status: Public on Mar 16 2018

organism: Fagopyrum tataricum


title: Illumina NextSeq 500 (Lampetra planeri)

organism: Lampetra planeri


title: IntegraChip genome-wide BAC arrays II

first: Nathalie

last: Clément

address: 26 rue d'Ulm

institute: Institut Curie

technology: spotted DNA/cDNA

description: This platform represents an updated version of GPL9715 with additional probes.

manufacture_protocol: This GEO Platform is a virtual representation of several arrays representing 5878 common clones among the differents versions.


title: Illumina NextSeq 500 (other sequences)

organism: other sequences


title: [LBL-Phy3b520660] Affymetrix PhyloChip G3

status: Public on Mar 14 2018

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism:
Bacteria
Archaea

description:
Data processing by Second Genome (http://www.secondgenome.com/platform/services/)

The probe sequences are under patent and therefore no CDF or probe mapping file is available for this array.

manufacture_protocol: See manufacturer's website (www.affymetrix.com)


title: Illumina MiSeq (Vibrio vulnificus CMCP6)


title: Illumina HiSeq 2500 (Pongo pygmaeus)

status: Public on Mar 12 2018

organism: Pongo pygmaeus


title: Illumina HiSeq 2500 (Petromyzon marinus)


title: Illumina HiSeq 2500 (Escherichia coli; Pseudomonas putida)

organism:
Pseudomonas putida
Escherichia coli


title: Illumina HiSeq 1500 (Sulfolobus acidocaldarius)

organism: Sulfolobus acidocaldarius


title: Illumina NextSeq 500 (Dunaliella salina)

organism: Dunaliella salina


title: Illumina HiSeq 2000 (Polyporus brumalis)

organism: Lentinus brumalis


title: NextSeq 550 (Candida albicans)

organism: Candida albicans


title: Illumina HiSeq 2500 (Malassezia restricta)

organism: Malassezia restricta


title: Illumina NextSeq 500 (Gorilla gorilla)

organism: Gorilla gorilla


title: HiSeq X Ten (Cryptococcus neoformans var. neoformans XL280)

status: Public on Mar 17 2018

organism: Cryptococcus deneoformans XL280


title: BGISEQ-500 (Danio rerio)

organism: Danio rerio


title: AB SOLiD 4 System (Arapaima gigas)

status: Public on Mar 15 2018

organism: Arapaima gigas


title: Agilent-066389 Medilus60K_v1 [Probe name version]

city: Boston

first: Bonnie

last: Blalock

state: MA

address: 100 Morrissey Blvd

department: School for the Environment

institute: University of Massachusetts Boston

organism: Mytilus edulis

description: Arrays of this design have barcodes that begin with 16066389 or 2566389.


title: NanoString nCounter Mouse miRNA screen

first: Norman

last: Haughey

address: 600N Wolfe Street, Pathology 608

department: Department of Neurology

institute: Joohns Hopkins School of Medcine

organism: Mus musculus


title: Nimblegen T. atroviride, T. virens and T.reesei-1 385K array

status: Public on Mar 09 2018

city: Villamayor

first: Marta

last: Montero-Barrientos

state: Salamanca

address: Río Duero 12

institute: CENIT SUPPORT SYSTEMS

organism:
Trichoderma virens
Trichoderma reesei
Trichoderma atroviride

description:
Expression design for three species of Trichoderma (T. atroviride, T. virens, T. reesei). Transcript sequences obtained from JGI (http://genome.jgi-psf.org). 34142 initial transcripts, selected five 60mer probes per transcript for 34115 transcripts; 2 replicates on array, empty features filled with randomly generated probes of comparable length and G+C content.

DESIGN_ID = 564671
designname = 120110_Trichoderma_sp_RP_exp

native array description file: 120110_Trichoderma_sp_RP_exp.ndf
native array description file: 120110_Trichoderma_sp_RP_exp.ngd

The GENE_INFO column contains accession numbers from JGI Trichoderma genomes;
Trichoderma reesei
http://genome.jgi.doe.gov/TrireRUTC30_1/TrireRUTC30_1.home.html
Trichoderm. virens
http://genome.jgi.doe.gov/TriviGv29_8_2/TriviGv29_8_2.home.html
Trichoderma atroviride
http://genome.jgi.doe.gov/Triat2/Triat2.home.html

manufacture_protocol: 120110_Trichoderma sp_RP_exp. The microarray was composed of 385,000 probes designed against the genomes of Trichoderma reesei (= Hypocrea jecorina), ID: 431241 + Trichoderma virens (= Hypocrea virens), ID: 413071 + Trichoderma atroviride (= Hypocrea atroviridis) ID: 197014


title: Illumina HiSeq 2500 (Paramecium tetraurelia)

organism: Paramecium tetraurelia


title: Agilent-045997 Arraystar human lncRNA microarray V3 (Feature Number version)

organism: Homo sapiens

relation: Alternative to: GPL16956 (Probe Name Version)


title: HiSeq X Ten (Flammulina velutipes)

organism: Flammulina velutipes


title: Illumina MiSeq (Escherichia virus T4)

organism: Tequatrovirus T4


title: Illumina HiSeq 2500 (Cucurbita pepo)

organism: Cucurbita pepo


title: Qiagen Mouse Inflammatory Response & Autoimmunity miRNA PCR Array (MIMM-105Z)

status: Public on Mar 13 2018

city: Bloomington

first: Patricia

last: Silveyra

email: psilveyr@iu.edu, ptrcslvr@gmail.com

state: Indiana

department: Environmental and Occupational Health

institute: Indiana University Bloomington

technology: RT-PCR

description:
PCR assay
The Mouse Inflammatory Response & Autoimmunity miScript miRNA PCR Array profiles the expression of 84 miRNAs predicted to regulate the expression of proinflammatory or antiinflammatory genes. This array provides researchers with a convenient way to quickly analyze the miRNAs most likely to be relevant to inflammatory and autoimmune disorders. These miRNAs have been carefully selected based on those predicted by bioinformatic algorithms and databases to regulate genes known to be relevant to inflammation. The profiling results from this array can serve as a useful molecular marker for the study of normal and pathological inflammation. The results may also provide a deeper understanding of the molecular mechanisms regulating inflammatory gene expression by miRNA. A set of controls present on this array enables data analysis using the ΔΔCT method of relative quantification, assessment of reverse transcription performance, and assessment of PCR performance. Using SYBR Green-based real-time PCR, the expression of a focused panel of miRNAs predicted to regulate inflammatory and autoimmune response genes can be easily and reliably analyzed with this miScript miRNA PCR Array.

distribution: commercial

manufacture_protocol: See manufacturer's website


title: Illumina HiSeq 2500 (Nomascus leucogenys)

organism: Nomascus leucogenys


title: NextSeq 550 (Candida albicans; Mus musculus)

organism:
Candida albicans
Mus musculus


title: Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (gene name version)

description:
Human only version 21.0

Design creation details:
Created by: Agilent Technologies
Created Date: 10/06/2014

Design Format: 8 x 60K
Number of Distinct microRNA Targets Covered: 2549
Number of Agilent Controls: 2164

Arrays of this design have barcodes that begin with 16070156 or 2570156.

relation: Alternative to: GPL21575 (feature number version)

manufacture_protocol: See manufacturer's web site at: http://www.agilent.com/


title: Illumina HiSeq 2500 (Botryosphaeria dothidea)

organism: Botryosphaeria dothidea


title: Illumina HiSeq 2000 (Dictyostelium discoideum AX2)

status: Public on Mar 08 2018

organism: Dictyostelium discoideum AX2


title: Illumina HiSeq 2500 (Dictyostelium discoideum AX2)


title: Illumina HiSeq 2000 (Ceratina calcarata)

organism: Ceratina calcarata


title: The miRCURYTM Array

status: Public on Mar 10 2018

city: Panjin

first: HUANG

last: HUANG

state: Liaoning

address: NO.2 Dagong Road, New District of Liaodong Bay

department: School of Life and Medical Sciences

country: China

institute: Dalian University of Technology

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 4000 (Brassica rapa subsp. pekinensis)

organism: Brassica rapa subsp. pekinensis


title: Illumina HiSeq 2000 (Homo sapiens; Influenza A virus (A/hvPR8/34(H1N1)))

organism:
Homo sapiens
Influenza A virus (A/hvPR8/34(H1N1))


title: Illumina HiSeq 2500 (Brassica rapa subsp. pekinensis)


title: Illumina HiSeq 2000 (Prunus domestica)

organism: Prunus domestica


title: JPT PepStar™ Peptide Microarrays [fHbp]

status: Public on Mar 07 2018

city: Siena

first: Erika

last: Bartolini

state: Italy

address: Via Fiorentina 1

department: AIMB

country: Italy

institute: GSK Vaccines

organism: Neisseria meningitidis serogroup B

technology: spotted peptide or protein


title: Illumina HiSeq 2500 (Dunaliella viridis)

last: GEO

organism: Dunaliella viridis


title: JPT PepStar™ Peptide Microarrays [NadA]


title: Illumina HiSeq 3000 (Xenopus andrei)

organism: Xenopus andrei


title: [MoGene-2_1-st] Affymetrix Mouse Gene 2.1 ST Array [CDF: mogene21st_Mm_ENTREZG_19.0.0]

organism: Mus musculus

description: This array is identical to GPL17400 but the data were analyzed with a custom CDF environment.

relation: Alternative to: GPL17400 (Alternative CDF (official))


title: Protein Microarray_Neisseria meningitidis [fHbp, NHBA and NadA]

organism: Neisseria meningitidis

manufacturer: Molecular biology Lab, AIMB, GSK Vaccines

manufacture_protocol: Purified recombinant protein were diluted at final concentration of 0.5 mg/ul in 40% glycerol and transferred into 384-well microtiterplates. One droplet of 0.2 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Schleicher and Schuell) using the non-contact printer Marathon Spotter (Arrayjet, Edinburgh, UK). Printing was performed in a cabinet with controlled humidity and temperature (55-60% and 12 °C respectively), resulting in spots of 90-110 μm in diameter range. Each protein was printed in 8 or 16 replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store a 4°C.


title: Illumina HiSeq 2000 (Colpoda aspera)

status: Public on Mar 06 2018

organism: Colpoda aspera


title: Illumina HiSeq 4000 (Ceratina calcarata)


title: Illumina NextSeq 500 (Oryza nivara)

status: Public on Mar 05 2018

organism: Oryza nivara


title: Illumina NextSeq 500 (Oryza rufipogon)

organism: Oryza rufipogon


title: Illumina HiSeq 4000 (Temnothorax rugatulus)

organism: Temnothorax rugatulus


title: Synechocystis sp. PCC 6803 AMADID 031054

city: Suita

first: Kenichi

last: Ogawa

state: Osaka

address: 1-5, Yamadaoka

institute: Osaka University

organism: Synechocystis sp. PCC 6803


title: Illumina HiSeq 2500 (Peronospora belbahrii)

status: Public on Mar 04 2018

organism: Peronospora belbahrii


title: Illumina NextSeq 500 (Clavispora lusitaniae)

organism: Clavispora lusitaniae


title: 96.96 Dynamic Array™ IFC for Gene Expression

city: Philadelphia

first: Rajanikanth

last: Vadigepalli

state: PA

address: 1020 Locust Street

department: Pathology, Anatomy and Cell Biology

institute: Thomas Jefferson University

organism: Rattus norvegicus

description: PCR assay

manufacture_protocol: see manufacturer's website


title: CC/DTM-Human-36K oligoarray-version 1

city: BETHESDA

first: PING

last: JIN

address: 9000 ROCKVILLE PIKE

department: DTM

institute: CC/DTM/NIH

organism: Homo sapiens

manufacture_protocol:
Commercial probe set was printed onto the array in our lab.
Commercial probe set containing 35,035 oligonucleotide  probes, representing approximately 25,100  unique genes and 39,600 transcripts excluding control  oligonucleotides (Operon Human Genome Array-Ready  Oligo Set version 4.0, Huntsville, AL, USA).
The microarray was composed of 48 blocks with one  spot printed per probe per slide


title: Illumina HiSeq 2500 (Ocimum basilicum)

organism: Ocimum basilicum


title: Parti_Mat_V1

status: Public on Mar 03 2018

city: Livermore

first: Xavier

last: Mayali

state: CA

address: 7000 East Ave

department: Chemical Science

institute: Lawrence Livermore National Laboratory

organism: Bacteria

description:
25 bp probes targeting the 16S rRNA of uncultivated microbes
mixed microbial communities

manufacture_protocol: ITO coated glass slides


title: Illumina NextSeq 500 (Cryptococcus neoformans var. grubii H99)

organism: Cryptococcus neoformans H99


title: Illumina HiSeq 2000 (Forsythia koreana)

status: Public on Mar 02 2018

organism: Forsythia koreana


title: Illumina HiSeq 2000 (Lithospermum officinale)

organism: Lithospermum officinale


title: Illumina Genome Analyzer II (Sus scrofa domesticus)

organism: Sus scrofa domesticus


title: Illumina NextSeq 500 (Anolis carolinensis)

organism: Anolis carolinensis


title: Illumina HiSeq 2000 (Forsythia viridissima)

organism: Forsythia viridissima


title: Illumina NextSeq 500 (Nippostrongylus brasiliensis)

organism: Nippostrongylus brasiliensis


title: Illumina HiSeq 2500 (Cynoglossus semilaevis)

status: Public on Mar 01 2018

organism: Cynoglossus semilaevis


title: Illumina HiSeq 3000 (Escherichia coli str. K-12 substr. MG1655)


title: Illumina HiSeq 2500 (Ocimum basilicum; Peronospora belbahrii)

organism:
Ocimum basilicum
Peronospora belbahrii


title: Illumina HiSeq 2500 (Mus musculus; Plasmodium berghei)

organism:
Plasmodium berghei
Mus musculus


title: Illumina HiSeq 2500 (Bemisia tabaci)

organism: Bemisia tabaci


title: Illumina NextSeq 500 (Ambystoma mexicanum)

organism: Ambystoma mexicanum


title: Agilent-032687 Homo sapiens 45K DMD ChIP

city: bologna

first: Samuele

last: Gherardi

state: Bologna

address: via selmi 3

institute: UNIBO

description:
Arrays of this design have barcodes that begin with 16032687 or 2532687.

Orientation:

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).


title: Illumina HiSeq 3000 (Brassica rapa)

status: Public on Dec 15 2017

organism: Brassica rapa


title: Agilent-039494 Human Gene expression 8x60K Microarray (Gene name version)

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology


title: Agilent-082421 Oryzias latipes Medaka_Genome83_Mitochondrie

city: Rennes

first: Aurelie

last: LE CAM

address: Campus de Beaulieu

department: PHASE

institute: INRA

organism: Oryzias latipes

description:
Arrays of this design have barcodes that begin with 16082421 or 2582421.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Nanostring human miRNA panel (NS_H_MIR_V3A)

city: Tel Aviv

first: Nir

last: Pillar

state: Israel

address: Faculty of Medicine (Room 303), Tel Aviv University

country: Israel

institute: Tel Aviv University

organism: Homo sapiens


title: RiboArray® human lncRNA Array

status: Public on Mar 25 2016

city: Guangzhou

first: Jianjun

last: Wu

address: Xinzao Town, Panyu District

department: School of Public Health

institute: Guangzhou Medical University


title: Illumina HiSeq 2000 (Yersinia pestis)

status: Public on Nov 02 2017

organism: Yersinia pestis


title: Illumina HiSeq 2000 (Forsythia suspensa)

organism: Forsythia suspensa


title: NanoString nCounter Human miRNA Expression Assay v2

status: Public on Oct 23 2016

city: Taipei

first: En-Ching

last: Luo

address: 10F.,No.1,Jen-Ai Rd.,Sec.1

country: Taiwan

institute: National Taiwan University

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: [RUSGene-1_0-st] Affymetrix Rice (US) Gene 1.0 ST Array [transcript (gene) version]

status: Public on Mar 14 2016

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Oryza sativa

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Annotation from RUSGene-1_0-st-v1.na34.rgap7.transcript.csv:
#%create_date=Thu Apr  3 00:35:47 2014 PDT
#%chip_type=RUSGene-1_0-st-v1
#%lib_set_name=RUSGene-1_0-st
#%lib_set_version=v1
#%genome-version=rgap7
#%genome-version-ucsc=rgap7
#%genome-lifted-method=None
#%genome-lifted_from-version-ucsc=rgap7
#%netaffx-annotation-date=2014-02-18
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster

manufacture_protocol: See manufacturer's web site


title: IntegraChip genome-wide BAC arrays

status: Public on Nov 25 2009

city: PARIS

first: Gaelle

last: PIERRON

address: 26, rue d'ULM

institute: INSTITUT CURIE

manufacture_protocol: This GEO Platform is a virtual representation of several arrays representing 2905 common clones among the differents versions.


title: Illumina NextSeq 500 (Oryza sativa)

status: Public on Oct 29 2015


title: [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [probe set (exon) version]

status: Public on Jun 22 2016

description:
#%create_date=Fri Mar 27 23:22:19 2015 PDT
#%chip_type=HuGene-2_1-st-v1
#%lib_set_name=HuGene-2_1-st
#%lib_set_version=v1
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=GRCh37
#%genome-version-create_date=2009-02-00
#%genome-lifted-method=liftOver
#%genome-lifted_from-species=Homo sapiens
#%genome-lifted_from-version-ucsc=hg19
#%genome-lifted_from-version-ncbi=GRCh37
#%netaffx-annotation-date=2014-10-31
#%netaffx-annotation-netaffx-build=35
#%netaffx-annotation-data-type=probe_set
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=

manufacture_protocol: See manufacturers web site


title: Ion Torrent Proton (Saccharomyces cerevisiae)

status: Public on Feb 04 2014

organism: Saccharomyces cerevisiae


title: Arraystar Human LncRNA microarray V2.0 (Agilent-033010 Feature Number version)

status: Public on Jul 08 2011

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

description: ArrayStar Human LncRNA Microarray V2.0 is designed for the global profiling of human LncRNAs and protein-coding transcripts. 33,045 LncRNAs and 30,215 coding transcripts can be detected by our second-generation LncRNA microarray. The LncRNAs are carefully collected from the most authoritative databases such as RefSeq, UCSC knowngenes, Ensembl and many related literatures. Each transcript is represented by a specific exon or splice junction probe which can identify individual transcript accurately. Positive probes for housekeeping genes and negative probes are also printed onto the array for hybridization quality control.

relation: Alternative to: GPL15314 (Probe Name version)

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: HiSeq X Ten (Rattus norvegicus)

organism: Rattus norvegicus


title: [RaGene-2_1-st] Affymetrix Rat Gene 2.1 ST Array [transcript (gene) version]

status: Public on Oct 07 2014

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Wed Apr  2 22:45:44 2014 PDT
#%chip_type=RaGene-2_1-st-v1
#%lib_set_name=RaGene-2_1-st
#%lib_set_version=v1
#%genome-species=Rattus norvegicus
#%genome-version=rn5
#%genome-version-ucsc=rn5
#%genome-version-ncbi=Rnor5.0
#%genome-version-create_date=2012-03-00
#%genome-lifted_from-species=Rattus norvegicus
#%genome-lifted_from-version-ucsc=rn5
#%genome-lifted_from-version-ncbi=Rnor5.0
#%netaffx-annotation-date=2013-08-30
#%netaffx-annotation-netaffx-build=34

relation: Alternative to: GPL23368 (Brainarray ENTREZG version 19)


title: Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (Feature Number version)

status: Public on Mar 10 2016

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

description:
Human only version 21.0

Design creation details:
Created by: Agilent Technologies
Created Date:  10/06/2014

Design Format: 8 x 60K
Number of Distinct microRNA Targets Covered: 2549
Number of Agilent Controls: 2164

Arrays of this design have barcodes that begin with 16070156 or 2570156.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL24741 (gene name version)

manufacture_protocol: See manufacturer's web site at: http://www.agilent.com/


title: Agilent-045997 Arraystar human lncRNA microarray V3 (Probe Name Version)

status: Public on Apr 05 2013

relation: Alternative to: GPL24721 (Feature Number version)


title: Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)

status: Public on Feb 20 2013

description:
SurePrint G3 Human GE v2 8x60K Microarray

Design ID: 039494
Design Format: 8 x 60 K
Control Grid: IS-62976-8-V2_60kby8_GX_EQC_201000210
Build Version: hg19:GRCh37:Feb2009

Arrays of this design have barcodes that begin with 16039494 or 2539494.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.