title: Agilent-033074 Jatropha curcas BOKU 60k micrarray (probe name version)

status: Public on May 31 2018

city: Vienna

first: Klemens

last: Vierlinger

address: Giefinggasse 4

department: HMD

country: Austria

institute: AIT

organism: Jatropha curcas

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: Agilent


title: Illumina HiSeq 2000 (Nomascus leucogenys)

status: Public on May 29 2018

last: GEO

country: USA

organism: Nomascus leucogenys

technology: high-throughput sequencing

distribution: virtual


title: Illumina NextSeq 500 (Nomascus leucogenys)


title: SA Biosciences Human miRNA MAH-3100 PCR Plate

status: Public on May 30 2018

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Homo sapiens

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: HiSeq X Ten (Citrus trifoliata)

organism: Citrus trifoliata


title: HiSeq X Ten (Citrus junos)

organism: Citrus junos


title: Agilent-079107 NIFTS_CitTahai151021

city: Shizuoka

first: Hiroshi

last: Fujii

state: Shizuoka

address: 485-6 Okitsunakacho, Shimizu

department: Division of Citrus Research

country: Japan

institute: Institute of Fruit Tree Science, NARO

organism: Citrus

description: Citrus Polyembryony Project: 1439 probes from polyembryony region ORF; 29389 probes from previous array Cclv1.0_CDS_array

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2000 (Citrus junos)


title: [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array [custom CDF]

status: Public on Apr 10 2019

city: Oulu

first: Jukka

last: Hakkola

address: Aapistie 5

department: Research Unit of Biomedicine

country: Finland

institute: University of Oulu

organism: Mus musculus

description: Chip Definition File v9, based on the Entrez Gene database (build 36, v2).

manufacture_protocol: See manufacturer's web site.


title: HiSeq X Ten (Mycobacterium bovis)

status: Public on May 25 2018

organism: Mycobacterium tuberculosis variant bovis


title: Immunity Evaluation Autoarray

city: Chongqin

first: Xiaodong

last: Xie

address: 30, gaotanyan Street, shapingba District

country: China

institute: Army medical university

description: mice immunity evaluation PCR assay panel

manufacture_protocol: High throughput RT-qPCR was carried out on ViiA7 platform (Life technology, USA) in a total reaction volume of 2.1μL (including 1.6μL BRYT Green mix, 0.15μL primer, and o.2μL reverse transcription product) according to the manufacturer’s protocol (Promega). The Echo 550 liquid handler (Labycte, USA) was used for liquid handling. The reactions were initiated in a 384-well optical plate at 95℃ for 5 min, followed by 40 cycles of 95℃ for 30s and 60℃ for 45s. Limma was used to identify genes that are differently expressed between experimental conditions


title: Nanostring nCounter v2 Human microRNA expression assay [NS_H_MIR_V2.1]

status: Public on May 25 2020

city: Durham

first: Jen-Tsan

last: Chi

state: NC

address: 101 Science Drive, DUMC 3382

department: Molecular Genetics and Microbiology

institute: Duke University

technology: other


title: Ion Torrent Proton (Vibrio cholerae)

organism: Vibrio cholerae


title: Ion Torrent S5 (Vibrio cholerae)


title: Illumina NextSeq 500 (Enterococcus faecalis V583)

organism: Enterococcus faecalis V583


title: Illumina NextSeq 500 (Enterococcus faecium Aus0004)

organism: Enterococcus faecium Aus0004


title: Illumina NextSeq 500 (Beta vulgaris)

status: Public on May 28 2018

organism: Beta vulgaris


title: Illumina HiSeq 2000 (Pseudomonas chlororaphis)

organism: Pseudomonas chlororaphis


title: Agilent Custom Castor semilooper Gene Expression 8X60K (AMADID: 84278) designed by Genotypic Technology Private Limited

status: Public on May 26 2018

city: Hyderabad

first: Aparna

middle: Dutta

last: Gupta

state: Telangana

address: S-41, Department of Animal Biology, School of Life Sciences, University of Hyderabad

department: Department of Animal Biology

country: India

institute: University of Hyderabad

organism: Achaea janata


title: JCVI PFGRC Salmonella Typhimurium/Typhi version 8

city: Dallas

first: Palmy

middle: R

last: Jesudhasan

state: TX

department: Microbiology

institute: University of Texas Southwestern Medical Center

organism: Salmonella enterica subsp. enterica serovar Typhimurium

technology: spotted oligonucleotide

distribution: non-commercial

manufacture_protocol: Microarray Version - 8; Number of Grids - 48; Element Type - 70mer Oligonucleotide; Surface Coating - Aminosilane; Oligonucleotides Designed - 5967; Replicate Oligo Printings - 2x; Controls - 500 Arabidopsis thaliana 70mers; 10 Arabidopsis thaliana amplicons.


title: Ion Torrent Proton (Campylobacter jejuni)

organism: Campylobacter jejuni


title: Illumina MiniSeq (Reston ebolavirus)

status: Public on May 24 2018

organism: Reston ebolavirus


title: Illumina MiniSeq (Bundibugyo ebolavirus)

organism: Bundibugyo virus


title: Illumina MiniSeq (Ebola virus)

organism: Ebola virus


title: Illumina MiniSeq (Sudan ebolavirus)

organism: Sudan ebolavirus


title: Illumina HiSeq 2500 (Tupaia chinensis)

organism: Tupaia chinensis


title: Illumina HiSeq 2500 (Spodoptera frugiperda)

organism: Spodoptera frugiperda


title: Illumina HiSeq 2000 (Trypanosoma congolense)

status: Public on May 23 2018

organism: Trypanosoma congolense


title: MYcroarray CAT-3x15K-Streptococcus pneumoniae R6

status: Public on May 17 2018

city: Seoul

first: Mukesh

middle: Kumar

last: Yadav

state: Seoul

department: Institute for Medical Device Clinical Trials

country: South Korea

institute: Korea University

organism: Streptococcus pneumoniae R6

manufacture_protocol: See manufacturer's web site  (http://www.mycroarray.com/technology/synthesis.html)


title: Nanostring nCounter v2 Human microRNA expression assay

city: Whitechapel

first: John

last: Bladen

address: 4 Newark Street

department: Blizard Institute

country: United Kingdom

institute: QMUL

organism: Homo sapiens


title: Illumina HiSeq 2000 (Haloferax volcanii)

status: Public on May 20 2018

organism: Haloferax volcanii


title: Illumina HiSeq 2000 (Rhizopus delemar)

organism: Rhizopus delemar


title: Illumina HiSeq 2500 (Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708)


title: Agilent-045212 Spart_array_design_1_01_Of_1 [Probe Name version]

status: Public on May 19 2018

first: Mariano

last: Alvarez

address: 2916 Bivins Road

department: Biology

organism: Sporobolus alterniflorus

description:
Spartina alterniflora custom array 1 (Designed by A. Salmon)

Arrays of this design have barcodes that begin with 16045212 or 2545212.


title: Illumina HiSeq 3000 (Escherichia coli BW25113)

organism: Escherichia coli BW25113


title: HiSeq X Ten (Sthenoteuthis oualaniensis)

status: Public on May 15 2018

organism: Sthenoteuthis oualaniensis


title: Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Ensembl version)

city: Goettingen

first: Alexander

last: Wolff

state: Lower Saxony

address: Humboldtallee 32

department: Medical Statistics

country: Germany

institute: UMG


title: Illumina HiSeq 4000 (Mus musculus x Mus spretus)

organism: Mus musculus x Mus spretus


title: Illumina HiSeq 2500 (Papio hamadryas)

status: Public on May 21 2018

organism: Papio hamadryas


title: PacBio RS II (Trypanosoma brucei brucei)

organism: Trypanosoma brucei brucei


title: Illumina HiSeq 4000 (Botrytis cinerea)

organism: Botrytis cinerea


title: Illumina HiSeq 2500 (Lichtheimia corymbifera; Mus musculus)

status: Public on May 22 2018

organism:
Mus musculus
Lichtheimia corymbifera


title: Agilent-031936 Myxococcus xanthus MXAN 8x15K v1

status: Public on May 14 2018

city: Murcia

first: Montserrat

last: Elías-Arnanz

state: Please Select

address: Campus Espinardo

department: Departamento de Genética y Microbiología

country: Spain

institute: University of Murcia

organism: Myxococcus xanthus

description:
GX microarray for Myxococcus xanthus

Arrays of this design have barcodes that begin with 16031936 or 2531936.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: MPIIB MWG-Ocimum Biosolutions E.coli K12 array

city: Berlin

first: Hans-Joachim

last: Mollenkopf

address: Charitéplatz 1

institute: Max-Planck-Institute for Infection Biology

organism: Escherichia coli K-12

description: total 9216 features (4608 features spotted in duplicate)

manufacture_protocol: The ssDNA probes were spotted in Nexterion spot2 buffer (Schott AG, Mainz, Germany) with a BioRobotics MicroGrid II robot printer (Genomic Solutions Ltd., Huntingdon, UK) onto glass slides coated with poly-L-lysine at 50-55% humidity and room temperature using MicroSpot 2500 quill pins (Genomic Solutions Ltd.) in 2 identical replicates. Oligonucleotides were crosslinked to the support by UV irradiation with a total energy of 240mJ UV and blocked with succinic anhydride and 1-methyl-2-pyrrolidone in borate buffer (Fluka, Deisendorf). Please note that feature number 17, 306, 595, 884, 1173, 1462, 1751, 2040, 2329, 2618, 2907, 3196, 3485, 3774, 4063, 4352, 4641, 4930, 5219, 5508, 5797, 6086, 6375, 6664, 6953, 7242, 7531, 7820, 8109, 8398, 8687, 8976 are empty, derived from the combination of MicroGrid II printing and Agilent Technologies Microarray scanner BA.


title: Illumina HiSeq 4000 (Populus x canadensis)

organism: Populus x canadensis


title: Illumina HiSeq 2000 (Toxoplasma gondii RH)

organism: Toxoplasma gondii RH


title: BGISEQ-500 (Gallus gallus)

organism: Gallus gallus


title: Illumina NextSeq 500 (Vibrio cholerae)

organism: Vibrio cholerae


title: Illumina HiSeq 2000 (Eimeria tenella)

status: Public on May 11 2018

organism: Eimeria tenella


title: Illumina HiSeq 2000 (Drosophila sechellia x Drosophila simulans)


title: NextSeq 550 (Trypanosoma brucei brucei)


title: illumina Nextseq 500 (Bos taurus)

status: Public on May 09 2018

organism: Bos taurus


title: Brapa V3 microarray

city: Daejeon

first: Yoonkang

last: Hur

address: 99 Daehak-ro, Yuseong-gu

department: Biological Sciences

institute: Chungnam National University

organism: Brassica rapa

description:
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf file is linked below as supplementary files.
111213_Brapa_V3_110211_YK_exp.ndf
111213_Brapa_V3_110211_YK_exp.ngd
111213_Brapa_V3_110211_YK_exp_HX12.ncd
Probes are designed from 41,173 genes of Brassica rapa accession Chiifu-401-42, a Chinese cabbage (Nature Genetics 43,1035–1039).

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_22.0.0]

status: Public on May 12 2018

organism: Homo sapiens

description: Brainarray: HuGene20stv1_Hs_ENTREZG_22.0.0

manufacture_protocol: See manufacturer's web site


title: Agilent-023213 Drosophila melanogaster yan targets array

status: Public on May 08 2018

city: Chicago

first: Jemma

middle: L.

last: Webber

state: IL

address: 929 E 57th Street

department: Ben May Department for Cancer Research

institute: University of Chicago

organism: Drosophila melanogaster

description:
array to look at expression of 604 putative Yan target genes

Arrays of this design have barcodes that begin with 16023213 or 2523213.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: BGISEQ-500 (Oryza sativa)

status: Public on May 10 2018

organism: Oryza sativa


title: Illumina NextSeq 500 (Sphingobium chlorophenolicum L-1)

status: Public on May 07 2018

organism: Sphingobium chlorophenolicum L-1


title: Exiqon miRCURY LNA microRNA array, 6th generation [miRBase v19.0, condensed Probe_ID version]

status: Public on May 05 2018

city: guangzhou

first: Li

middle: qian

last: qian

institute: Southern Medical University

description:
GalFile=gal_208400,208401,208402,208420,208421,208422_lot34104-34104_hsa-and-related-vira_from_mb190,miRPlus.gal
Product=miRCURY LNA microRNA Array, 6th generation - hsa, mmu & rno
Supplier=Exiqon A/S
ProductDate=November 2010
ProductNumber=208400,208401,208402,208420,208421,208422
LotNumberRange=34104-34104
URL=http://www.exiqon.com/SEEEMS/26.asp
Organism(s)=Homo sapiens, Human lymphocryptovirus, Human cytomegalovirus, Human immunodeficiency virus 1, Human herpes simplex virus 1, Human rhadinovirus, Simian polyomavirus 40, JC polyomavirus, BK polyomavirus, Merkel cell polyomavirus, Herpes simplex virus 2
GalFileCreationDate=2012-09-18 16:33
ArrayContents_DesignedFor=miRBase 16.0
ArrayContents_CurrentNameColumn=miRBase 19.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:63.61%


title: [Axiom_Cj70K_v2] Affymetrix Axiom Japanese cedar Custom Genotyping Array

city: Hitachi

first: Kentaro

last: Mishima

state: Ibaraki

address: 3809-1 Juochoishi

department: Breeding Department

institute: Forest Tree Breeding Center

organism: Cryptomeria japonica

description: Data table: Axiom_Cj70K_v2_Annotation.r1.csv

manufacture_protocol: see manufacturer's web site


title: Illumina NextSeq 500 (Vigna radiata)

status: Public on May 04 2018

last: GEO

organism: Vigna radiata


title: Illumina HiSeq 2500 (Cajanus cajan)

organism: Cajanus cajan


title: Illumina HiSeq 2000 (Prunus armeniaca)

organism: Prunus armeniaca


title: Illumina HiSeq 2500 ([Candida] glabrata; Homo sapiens)

organism:
Nakaseomyces glabratus
Homo sapiens


title: Illumina HiSeq 4000 (Enterobacter soli)

organism: Enterobacter soli


title: Custom Nimblegen strawberry 60-mer microarray (FraGenomics 35k)

city: CÓRDOBA

first: Francisco

middle: Javier

last: Molina-Hidalgo

state: Cordoba

address: Edif. Severo Ochoa (C6.) Planta Baja-Ala Norte Campus de Rabanales

department: Biochemistry and molecular biology

institute: University of Cordoba

organism: Fragaria x ananassa

description: A custom-made oligo microarray (60-mer length) platform (FraGenomics 35k) containing a total of 35234 singletons corresponding to those sequences published in the strawberry genome project (http://www.strawberry.org). For each sequence, 4 different oligos were printed per block and four blocks were printed per data set.

manufacture_protocol: In accordance with the procedures described in the expression analysis section  Nimblegen Systems Inc.,  http://www.nimblegen.com/.


title: Illumina HiSeq 2500 (Candida tropicalis; Homo sapiens)

organism:
Candida tropicalis
Homo sapiens


title: Illumina HiSeq 2500 (Candida albicans; Homo sapiens)

organism:
Candida albicans
Homo sapiens


title: Illumina HiSeq 2000 (Trichoderma asperellum)

organism: Trichoderma asperellum


title: Illumina NextSeq 500 (Oryza sativa aus subgroup)

status: Public on May 03 2018

organism: Oryza sativa aus subgroup


title: Ion Torrent Proton (Corynebacterium pseudotuberculosis)

organism: Corynebacterium pseudotuberculosis


title: Illumina HiSeq 2000 (Ostreococcus tauri)

organism: Ostreococcus tauri


title: Agilent-074475 CBCratlncRNAmRNA [Probe Name version]

city: Beijing

first: Hao

last: Tang

address: Capital Medical University Beijing Chaoyang Hospital

department: Department of Urology

institute: Institute of Urology, Capital Medical University.

organism: Rattus norvegicus


title: Illumina HiSeq 2500 (Candida parapsilosis; Homo sapiens)

organism:
Candida parapsilosis
Homo sapiens


title: BGISEQ-500 (Nelumbo nucifera)

organism: Nelumbo nucifera


title: Illumina HiSeq 4000 (Bifidobacterium longum subsp. longum BBMN68)


title: HiSeq X Ten (Pelophylax nigromaculatus)

status: Public on May 02 2018

organism: Pelophylax nigromaculatus


title: Illumina HiSeq 2500 (Thermothelomyces thermophila)

organism: Thermothelomyces thermophilus


title: [Axiom_Cj70K_v1] Affymetrix Axiom Japanese cedar Custom Genotyping Array

organism: Cryptomeria japonica

description: Data table: Axiom_Cj70K_v1_Annotation.r1.csv


title: Illumina HiSeq 4000 (Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S)


title: Illumina HiSeq 2500 (Vachellia cornigera)

status: Public on May 01 2018

organism: Vachellia cornigera


title: Agilent-059791 Saccharomyces cerevisiae tilling 8x60K v1

city: Nagakute

first: Nobuhiko

last: Muramoto

state: Aichi

address: 41-1, Yokomichi

institute: TOYOTA Central R&D Labs., Inc.

organism: Saccharomyces cerevisiae

description:
Arrays of this design have barcodes that begin with 16059791 or 2559791.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-053770 Arabidopsis thaliana 180K tiling array [At_tilling_180K_v4]

organism: Arabidopsis thaliana

description:
Arrays of this design have barcodes that begin with 16053770 or 2553770.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Borreliella burgdorferi)

organism: Borreliella burgdorferi


title: Illumina HiSeq 4000 (Colpoda aspera)

organism: Colpoda aspera


title: Agilent-049469 spneumoniae_2013_1368446988965 034520

city: Greifswald

first: Sven

last: Hammerschmidt

state: MV

address: Felix-Hausdorff-Str. 8

department: Molecular Genetics and Infection Biology

institute: University of Greifswald

organism: Streptococcus pneumoniae

description:
2013
Arrays of this design have barcodes that begin with 16049469 or 2549469.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent microarray Scanner G2505C (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Agilent microarray Scanner G2505C (barcode on the bottom, DNA on the front surface).
To match data scanned on an Agilent microarray Scanner G2505C, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

first: Alejandro

last: Gomez Mejia

first: Gustavo

last: Gamez

first: Stephanie

last: Hirschmann

first: Viktor

last: Kluger

first: Hermann

last: Rath

first: Sebastian

last: Böhm

first: Franziska

last: Voss

first: Niamatullah

last: Kakar

first: Lothar

last: Petruschka

first: Uwe

last: Völker

first: Reinhold

last: Brückner

first: Ulrike

last: Mäder

first: Gerhard

last: Buurchardt

first: Birgit

last: Rietow


title: Illumina NextSeq 500 (Mycobacterium bovis BCG)

last: GEO

organism: Mycobacterium tuberculosis variant bovis BCG


title: Illumina NextSeq 500 (Oryza sativa Indica Group)

organism: Oryza sativa Indica Group


title: Affymetrix Panicum virgatum arry

city: Ardmore

first: Kiran

last: Mysore

state: Oklahoma

address: 2510 Sam Noble Parkway

institute: Noble Research Institute

organism: Panicum virgatum

description: PviUT sequence IDs are located in a public database. (https://switchgrassgenomics.noble.org/).

manufacture_protocol: Affymetrix


title: NextSeq 550 (Rattus norvegicus)

status: Public on May 24 2018


title: RT2 ProfilerTM PCR array Mouse Chemokines & Receptors

status: Public on Feb 21 2018

city: Tokushima

first: Aya

last: Ushio

state: Tokushima

address: Kuramoto

department: Oral Molecular Pathology

institute: Tokushima University

organism: Mus musculus

description:
PCR assay
RT2 ProfilerTM PCR array


title: Illumina NextSeq 500 (Homo sapiens; Human betaherpesvirus 5)

organism:
Homo sapiens
Human betaherpesvirus 5


title: Agilent-068757 Dinoroseobacter shibae DFL12T

status: Public on Jan 20 2018

city: Xiamen

first: Yunlan

last: Yang

address: Zhourong quan BLV 2-306, Xiamen University, Xianan, Xiamen

institute: Xiamen university

organism: Dinoroseobacter shibae

manufacture_protocol: Manufacturer protocol see manufacturer's web site at http://www.agilent.com/


title: [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array

status: Public on Mar 18 2009

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 08, 2012: annotation table updated with netaffx build 32
July 01, 2016: annotation table updated with netaffx build 35

distribution: commercial

relation: Alternative to: GPL16763 (Alternative CDF [Brainarray V.10, Mm430A_Mm_ENTREZG_v10])

manufacture_protocol:
see manufacturer's web site

The GeneChip Mouse Genome 430A 2.0 Array is a single array representing approximately 14,000 well-characterized mouse genes that can be used to explore biology and disease processes.

Provides coverage of well-substantiated genes in the transcribed mouse genome on a single array.

Analyzes the expression level of approximately 14,000 well-characterized mouse genes.

Sequences used in the design of the array were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 107, June 2002) and then refined by analysis and comparison with the publicly available draft assembly of the mouse genome from the Whitehead Institute for Genome Research (MGSC, April 2002).

All probe sets represented on the GeneChip Mouse Expression Array 430A are included on the GeneChip Mouse Genome 430A 2.0 Array. These two arrays were initially accessioned in GEO as GPL339. However, in March 2009 the 430A 2.0 was accessioned as GPL8321, and all 430A 2.0 data was linked to this new platform.


title: Agilent-045251 Human Metagenome PathoChip [Probe Name Version]

city: Philadelphia

first: Sagarika

last: Banerjee

address: 3610 Hamilton Walk

institute: University of Pennsylvania

organism: human metagenome

description: PathoChip, a metagenomic array comprising probes for all known micro-organisms in NCBI database.


title: Applied Biosystems Taqman Array Human MicroRNA A+B Cards Set v3.0

status: Public on Oct 12 2016

city: Melbourne

first: MAOSHAN

last: CHEN

state: Victoria

address: La Trobe University, Bundoora

department: Department of Biochemistry and Genetics

country: Australia

institute: La Trobe University

organism: Homo sapiens

description:
PCR assay
Applied Biosystems Megaplex Primer Pools, Human Pools Set v3.0 (catalog number 4444750).
miRNA annotation based on miRBase release 14.

manufacture_protocol: See manufacturer's website.


title: Illumina NovaSeq 6000 (Salmo salar)

organism: Salmo salar


title: Illumina Human PsychArray-24 v1.1

status: Public on Dec 19 2016

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

technology: oligonucleotide beads

manufacture_protocol:
See manufacturer's website
support.illumina.com/array/array_kits/infinium-psycharray-beadchip-kit.html


title: Agilent-072320 1M BL21_NC_012971_v1

status: Public on Jan 13 2017

city: Seoul

first: Sung Ho

last: Yoon

address: 120 Neungdong-ro, Gwangjin-gu

department: Department of Bioscience and Biotechnology

institute: Konkuk University

organism: Escherichia coli BL21(DE3)

description: Design ID: 072320

manufacture_protocol: custom-commercial


title: Agilent-021113 Tobacco Gene Expression Microarray (Probe Name version)

status: Public on Oct 22 2015

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

organism: Nicotiana tabacum

description:
Arrays of this design have barcodes that begin with 16021113 or 2521113.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 4000 (Macaca fascicularis)

organism: Macaca fascicularis


title: Illumina HiSeq 2000 (Oryza sativa Indica Group)

status: Public on Sep 08 2011


title: HiSeq X Ten (Macaca mulatta)

status: Public on Jan 18 2018

organism: Macaca mulatta


title: Illumina HiSeq 1500 (Rattus norvegicus)

status: Public on Mar 11 2014

organism: Rattus norvegicus


title: Rosetta/Merck Human RSTA Custom Affymetrix 2.0 microarray [HuRSTA_2a520709.CDF]

status: Public on Jul 01 2012

city: Tampa

first: Steven

last: Eschrich

state: FL

address: 12902 Magnolia Drive

department: Biostatistics & Bioinformatics

institute: Moffitt Cancer Center

description: This is an alternate definition for the custom Rosetta/Merck Affymetrix array. For the canonical platform, see GPL10379.

first: Eschrich

last: Steven

manufacture_protocol: See manufacturer website.


title: MinION (Mus musculus)

status: Public on May 08 2018


title: Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Feature Number version)

status: Public on Aug 17 2006

description:
Designed to truly represent all known genes in the mouse genome and their resulting transcripts, Agilent's Whole Mouse Genome Oligo – 4X44K microarray is comprised of 41,534 60-mer oligonucleotide probes representing over 41,000 mouse genes and transcripts. Content for this microarray was generated from leading public databases, including RefSeq, RIKEN, NIA, Ensembl, RIKEN, UCSC Goldenpath, and Unigene.

Arrays of this design have barcodes that begin with 16014868 or 2514868.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7202.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array

status: Public on Jul 01 2004

organism: Drosophila melanogaster

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 08, 2012: annotation table updated with netaffx build 32
July 06, 2016: annotation table updated with netaffx build 35

relation: Alternative to: GPL13770 (Alternative ENSG.CDF V12)

manufacture_protocol:
see manufacturer's web site

The GeneChip Drosophila Genome 2.0 Array is a microarray tool for studying expression of Drosophila melanogaster transcripts:
- Provides comprehensive coverage of the transcribed Drosophila genome on a single array
- Comprised of 18,880 probe sets, analyzing over 18,500 transcripts

Sequences used in the design of the GeneChip Drosophila Genome 2.0 Array were selected from Flybase version 3.1.
Oligonucleotide probes complementary to each corresponding sequence are synthesized in situ on the arrays. Fourteen pairs of oligonucleotide probes are used to measure the level of transcription of each sequence.


title: Illumina HiSeq 2000 (Caenorhabditis elegans)

status: Public on May 26 2011

organism: Caenorhabditis elegans