title: Exiqon microRNA Ready-to-Use PCR Human panel I+II

status: Public on Jun 30 2018

city: Lodz

first: Wojciech

last: Fendler

state: Lodzkie

address: 15 Mazowiecka Str.

department: Department of Biostatistics and Tranalational Medicine

country: Poland

institute: Medical University of Lodz

organism: Homo sapiens

technology: RT-PCR

description:
catalog # 203612
microRNA Ready-to-Use PCR, Human panel I+II, V3R
miRCURY LNA™ Universal RT microRNA PCR, Human panel I+II in 384 well PCR plates, one reaction each of 752 human microRNAs plus control assays.

distribution: custom-commercial

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 2500 (Escherichia coli ATCC 8739)

status: Public on Jun 29 2018

last: GEO

country: USA

organism: Escherichia coli ATCC 8739

technology: high-throughput sequencing

distribution: virtual


title: Agilent Custom M.tuberculosis Expression  8x15k Array (AMADID: 023057) designed by Genotypic Technology Private Limited.

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Mycobacterium tuberculosis

technology: in situ oligonucleotide


title: Agilent-036781 TN Fusarium graminearum custom 8X15k array ver1.2

status: Public on Feb 14 2019

city: Kanazawa

first: Takumi

last: Nishiuchi

address: 13-1 Takaramachi

country: Japan

institute: Kanazawa University

organism:
Fusarium sporotrichioides
Fusarium graminearum

technology: spotted oligonucleotide

distribution: non-commercial


title: Agilent-074809 SurePrint G3 Mouse GE v2 8x60K Microarray [Gene name version]

city: Baltimore

first: Anne

middle: E.

last: Jedlicka

state: MD

address: 615 N. Wolfe street

department: Molecular Microbiology and Immunology

institute: Johns Hopkins University, School of Public Health

organism: Mus musculus

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 4000 (Bacillus marmarensis)

status: Public on Jun 26 2018

organism: Alkalihalophilus marmarensis


title: Illumina NextSeq 500 (Lysinibacillus sp. B2A1)

status: Public on Jun 28 2018

organism: Lysinibacillus sp. B2A1


title: Illumina NextSeq 500 (Botrytis cinerea; Vitis vinifera)

organism:
Vitis vinifera
Botrytis cinerea


title: Illumina NextSeq 500 (Mus musculus; Mycobacterium tuberculosis)

status: Public on Jun 27 2018

organism:
Mycobacterium tuberculosis
Mus musculus


title: Illumina Genome Analyzer II (Saccharum hybrid cultivar SP70-1143)

status: Public on Jun 22 2018

organism: Saccharum hybrid cultivar SP70-1143


title: Illumina Genome Analyzer II (Saccharum robustum)

organism: Saccharum robustum


title: Illumina HiSeq 4000 (Fundulus heteroclitus)

organism: Fundulus heteroclitus


title: Illumina Genome Analyzer II (Saccharum barberi)

organism: Saccharum barberi


title: Agilent-079361 Acinetobacter baumannii Gene Expression 8x15k Array (including controls)

first: Deepesh

last: Nagarajan

address: FB-04, B-wing, Department of Biochemistry, New Biology Building, IISc

department: Department of Biochemistry

institute: Indian Institute of Science

organism: Acinetobacter baumannii

description:
Designed by Genotypic Technology Private Limited.
AMADID: 079361


title: Illumina Genome Analyzer II (Saccharum sinense)

organism: Saccharum sinense


title: Agilent-074168 FU-Steppuhn Nicotiana attenuata 60K v1.0

city: Berlin

first: Tobias

last: Lortzing

state: Berlin

address: Haderslebener Str. 9

department: Biology

country: Germany

institute: Freie Universität Berlin

organism: Nicotiana attenuata

manufacture_protocol: For manufacturing details, see Agilent website (http://www.agilent.com).


title: GCAT: WashU Operon Array-Ready Yeast Oligo set (Yeast_V1.1.2) and Ontario: UHNMAC Yeast 6.4 K array (Y6.4K) version 7

city: Los Angeles

first: Kam

middle: D.

last: Dahlquist

state: CA

address: 1 LMU Drive, MS8220

institute: Loyola Marymount University

organism: Saccharomyces cerevisiae

description:
GCAT: Operon Array-Ready Yeast Oligo set was printed on epoxy slides, twice, once on the top and once on the bottom of the slide resulting in two sets of grids on the top and bottom of the slide. For each, grid rows: 4; grid columns: 4; rows: 21 ;columns: 22; 6772 unique genes and 620 empty spots.
Ontario: spotted DNA/cDNA (double-spotted array containing 6240 yeast ESTs derived from PCR amplification of synthetic EST clones, plus 320 control spots of Arabidopsis totalling 6.4K). Grid rows: 12; grid columns: 4; rows: 17; columns: 16, grid to grid distance: 4500 um; spot to spot distance: 200 um; spot size: 100 um.

manufacturer: GCAT: Washington University, Ontario: Microarray Centre - University Health Network - Toronto - Canada

manufacture_protocol:
GCAT: Operon Array-Ready Yeast Oligo set was printed on epoxy slides according to the yeast gal file for 2005-6 on the GCAT website at: http://www.bio.davidson.edu/projects/GCAT/GCATprotocols.html#yeast.
Ontario: Microarrays are printed on UltraGAPS slides (Corning Inc.) using high-precision robotics. Printed arrays are processed following Corning's protocol and are ready-to-use.
Ontario: 1. Acquisition of bacterial clone set — our Yeast 6.4k clone set is derived from Research Genetics Genepairs. Detailed information about the ORFs and sequences can be found at http://www.yeastgenome.org/
Ontario: 2. Clone set is PCR amplified and DNA purified in working 96 well plates.
Ontario: 3. The purified DNA is then transferred to 384 well source plates with DNA concentration ranging from 0.10ug/ul to 0.25ug/ul. These are used for spotting.
Ontario: 4. Microarrays are printed on UltraGAPS ™ slides (Corning Inc.) using high-precision robotics (up to 48 pins or print heads). Printed arrays are processed following Corning's protocol and are ready-to-use. Up to 120 slides are printed in each batch and batches that result in greater than 95% printing fidelity are selected for post printing quality control tests (measuring spot morphology, quality of background and signal intensity in a real hybridization using yeast total RNA, vector probe labeling method and terminal transferase tailing method).


title: HiSeq X Ten (Komagataella pastoris)

organism: Komagataella pastoris


title: Illumina Genome Analyzer II (Saccharum hybrid cultivar RB867515)

organism: Saccharum hybrid cultivar RB867515


title: Illumina Genome Analyzer II (Saccharum spontaneum)

organism: Saccharum spontaneum


title: Illumina HiSeq 2500 (Human gammaherpesvirus 8)

organism: Human gammaherpesvirus 8


title: Applied Biosystems TaqMan Low Density Array (TLDA rodent miRNA v2.0; A/B Cards)

status: Public on Jun 21 2018

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism:
Mus musculus
Rattus norvegicus

distribution: commercial

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2500 (Giardia intestinalis)

organism: Giardia duodenalis


title: Illumina HiSeq 2500 (Vaccinium)

status: Public on Jun 20 2018

organism: Vaccinium


title: Illumina HiSeq 2500 (Pisum sativum)

organism: Lathyrus oleraceus


title: Illumina HiSeq 2500 (Cucumis melo)

organism: Cucumis melo


title: Illumina HiSeq 2500 (Citrus reticulata)

organism: Citrus reticulata


title: Illumina HiSeq 2500 (Cocos nucifera)

organism: Cocos nucifera


title: Illumina HiSeq 2500 (Actinidia chinensis)

organism: Actinidia chinensis


title: Illumina HiSeq 2500 (Zingiber officinale)

organism: Zingiber officinale


title: HiSeq X Ten (Beauveria bassiana)

organism: Beauveria bassiana


title: Illumina Genome Analyzer IIx (Avicennia schaueriana)

organism: Avicennia schaueriana


title: Illumina HiSeq 3000 (Anopheles gambiae)

organism: Anopheles gambiae


title: Illumina HiSeq 4000 (Phytophthora infestans)

organism: Phytophthora infestans


title: Illumina HiSeq 4000 (Phytophthora sojae)

organism: Phytophthora sojae


title: Illumina HiSeq 2500 (Boehmeria nivea)

organism: Boehmeria nivea


title: Illumina HiSeq 2000 (Psychotria gabriellae)

organism: Psychotria gabriellae


title: Illumina HiSeq 2000 (Psychotria semperflorens)

organism: Psychotria semperflorens


title: Illumina HiSeq 2000 (Psychotria costivenia)

organism: Psychotria costivenia


title: Illumina HiSeq 2000 (Homalium kanaliense)

organism: Homalium kanaliense


title: Illumina HiSeq 2000 (Psychotria grandis)

organism: Psychotria grandis


title: Illumina HiSeq 2000 (Homalium betulifolium)

organism: Homalium betulifolium


title: Illumina HiSeq 2000 (Geissois pruinosa)

organism: Geissois pruinosa


title: Illumina HiSeq 2000 (Lasiocroton microphyllus)

organism: Lasiocroton microphyllus


title: Illumina HiSeq 2000 (Geissois racemosa)

organism: Geissois racemosa


title: Illumina HiSeq 2500 (Citrus x paradisi)

organism: Citrus x paradisi


title: Illumina HiSeq 2000 (Leucocroton havanensis)

organism: Leucocroton havanensis


title: HiSeq X Ten (Branchiostoma lanceolatum)

status: Public on Jun 14 2018

organism: Branchiostoma lanceolatum


title: Illumina NextSeq 500 (Mycolicibacterium smegmatis)

organism: Mycolicibacterium smegmatis


title: Illumina HiSeq 4000 (mouse gut metagenome)

organism: mouse gut metagenome


title: Illumina HiSeq 2500 (Cardamine hirsuta)

status: Public on Jun 19 2018

organism: Cardamine hirsuta


title: Cytoskeletal Cilia

status: Public on Jun 16 2018

first: Sharon

last: Gerecht

state: Maryland

address: 3400 N. Charles Street

institute: Johns Hopkins University

organism: Homo sapiens

description:
design ID: PAHYO9A
PCR assay


title: HiSeq X Ten (Silurus asotus)

organism: Silurus asotus


title: Illumina MiSeq (Oryza sativa Indica Group)

status: Public on Jun 11 2018

organism: Oryza sativa Indica Group


title: HiSeq X Ten (Silurus meridionalis)

organism: Silurus meridionalis


title: Illumina HiSeq 2500 (Human gammaherpesvirus 4)

organism: human gammaherpesvirus 4


title: Illumina HiSeq 2000 (Fundulus heteroclitus)

status: Public on Jun 15 2018

organism: Fundulus heteroclitus


title: Illumina NextSeq 500 (Trichoderma atroviride)

organism: Trichoderma atroviride


title: Illumina HiSeq 2500 (Capsella rubella)

organism: Capsella rubella


title: Illumina HiSeq 2000 (Saccharomyces cerevisiae; Schizosaccharomyces pombe)

organism:
Schizosaccharomyces pombe
Saccharomyces cerevisiae


title: NanoString nCounter Coho Salmon Custom array

status: Public on Jun 13 2018

city: Tacoma

first: Andrew

middle: Ronald

last: Spanjer

state: WA

address: 934 Broadway STE 300

department: Department of the Interior

institute: US Geological Survey

organism: Oncorhynchus kisutch

technology: other

manufacture_protocol: Total RNA Standard nCounter Gene Expression Protocol for 12 nCounter Assays at a time


title: Illumina HiSeq 1500 (Vibrio cholerae)

status: Public on Jun 12 2018

organism: Vibrio cholerae


title: Illumina HiSeq 1500 (Mustela putorius furo)

organism: Mustela putorius furo


title: Illumina HiSeq 4000 (Bigelowiella natans)

organism: Bigelowiella natans


title: SABiosciences RT² Profiler PCR Array Human Human Cytokines & Chemokines [PAHS-150Z]

city: Tehran

first: Farzam

last: Vaziri

address: 12th Farvardin Ave, Jomhhoori St

country: Iran

institute: Pasteur Institute of Iran

description:
Cytokines & ChemokinesPCR assay panel
SABiosciences RT² Profiler panel of PCR assays.


title: Illumina HiSeq 3000 (Clostridioides difficile)

organism: Clostridioides difficile


title: Fluidigm gene panel for CLP analysis_48 genes

city: Lund

first: Shamit

last: Soneji

address: Solvegatan 19

country: Sweden

institute: BMC

organism: Mus musculus

description: PCR assay


title: Illumina HiSeq 2500 (Homo sapiens; Human betaherpesvirus 6B)

status: Public on Jun 08 2018

organism:
Homo sapiens
Human betaherpesvirus 6B


title: Illumina HiSeq 1500 (Streptomyces venezuelae)

organism: Streptomyces venezuelae


title: Illumina MiSeq (Streptomyces venezuelae)


title: Illumina HiSeq 2500 (Actinosynnema pretiosum)

organism: Actinosynnema pretiosum


title: Illumina HiSeq 2000 (Sphingomonas wittichii)

organism: Rhizorhabdus wittichii


title: Illumina HiSeq 2000 (Bacillus cereus ATCC 14579)

organism: Bacillus cereus ATCC 14579


title: Illumina HiSeq 2000 (Musa acuminata subsp. malaccensis)

organism: Musa acuminata subsp. malaccensis


title: Illumina HiSeq 3000 (Temora longicornis)

status: Public on Jun 07 2018

organism: Temora longicornis


title: InfiniumOmni2-5Exome-8v1-3_A1

organism: Homo sapiens

technology: oligonucleotide beads


title: Mesenchymal stem cells (SAB Target List) H96 Predesigned 96-well panel for use with SYBR® Green

city: Edegem

first: Steffi

last: Matthyssen

state: Antwerpen

address: Wilrijkstraat 10, UZA/CCRG U113

country: Belgium

institute: University of Antwerp

description:
PCR assay
Mesenchymal stem cells (SAB Target List)


title: RT2 RNA QC PCR Arrays

city: Wuhan

first: M

middle: X

last: Chang

address: Luojiaashan

country: China

institute: Institute of Hydrobiology, Chinese Academy of Sciences

organism: Danio rerio

manufacture_protocol: see manufacturer's website; https://www.qiagen.com/cn/shop/genes-and-pathways/custom-products/manage-custom-products/


title: LC Sciences MRA-1001LCB_miRHuman_20

city: Shijiazhuang

first: Xuemin

last: Niu

address: 139 Ziqiang Road

institute: The Third Hospital of Hebei Medical University


title: Illumina NextSeq 500 (Lactobacillus plantarum)

organism: Lactiplantibacillus plantarum


title: Illumina HiSeq 2000 (Tetranychus truncatus)

organism: Tetranychus truncatus


title: Illumina HiSeq 2000 (Noccaea caerulescens)

status: Public on Jun 06 2018

organism: Noccaea caerulescens


title: Illumina HiSeq 2000 (Thlaspi montanum)

organism: Thlaspi montanum


title: Exiqon miRCURY LNA Universal RT microRNA PCR

city: Aarhus N

first: Karina

middle: Dalsgaard

last: Sørensen

state: Aarhus N

address: Palle Juul-Jensens Boulevard 99

department: Molecular Medicine

country: Denmark

institute: Aarhus University

manufacture_protocol: See manufacturer's website http://www.exiqon.com/mirna-pcr


title: Illumina NextSeq 500 (Enterobacteria phage T7)

organism: Escherichia phage T7


title: [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate (custom CDF)

status: Public on Jun 05 2018

city: Eindhoven

first: Henk

last: van Ooijen

address: High Tech Campus 11

department: Precision & Decentralized Diagnostics

country: Netherlands

institute: Philips Research

description: The CDF has been provided as a .Rdata file. It is available below. The ASCII format version is not available.

manufacture_protocol: see the Affymetrix website


title: Illumina HiSeq 4000 (Coprinopsis cinerea)

status: Public on Jun 01 2018

last: GEO

organism: Coprinopsis cinerea


title: Illumina MouseRef-8 v2.0 expression beadchip

status: Public on May 21 2008

city: San Diego

last: Illumina Inc.

address: 9885 Towne Centre Drive

institute: Illumina Inc.

description:
The MouseRef-8 v2.0 Expression BeadChip offer the most up-to-date content for whole-genome expression profiling in the mouse. Featuring content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36, Release 22).

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data.  These should be submitted as part of a GEOarchive.  Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html


title: PacBio RS II (Danio rerio)


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [lncRNAs hugene21st_Hs_ENSG]

status: Public on Jun 04 2018

city: MILAN

first: Luca

last: Agnelli

address: Venezian 1

department: Department of Advanced Diagnostics

country: Italy

institute: IRCCS Istituto Nazionale dei Tumori


title: HiSeq X Ten (Elaeis guineensis)

organism: Elaeis guineensis


title: Qiagen Human miScript miRNome array (V21)

city: Johnson City

first: Charles

middle: Albert

last: Stuart

state: TN

address: ETSU Quillen, PO 70622

department: Internal Medicine

institute: Quillen College of Medicine

description: qPCR assay


title: Illumina MiSeq (Borreliella burgdorferi)

organism: Borreliella burgdorferi


title: PacBio RS II (Borreliella burgdorferi)


title: Agilent-075249 Diel cycles UCYN-A2 [Atelocyanobacterium thalassa]

city: Córdoba

first: Muñoz Marin

last: Maria del Carmen

state: Córdoba

address: Campus Rabanales

department: Bioquímica y Biología Molecular

country: Spain

institute: Universidad de Córdoba


title: Agilent-070762 UCYNA1 and UCYNA2 project2 070761 [Atelocyanobacterium thalassa]

description: I have designed 1 slide with probes for two genomes of cyanobacteria UCYNA1 and UCYNA2


title: Illumina HiSeq 4000 (Lens culinaris)

organism: Lens culinaris


title: TaqMan Array Human MiRNA A Card v2.0

city: Louisville

first: J.

middle: Christopher

last: States

state: KY

address: 505 S. Hancock St., Rm 304

department: Department of Pharmacology & Toxicology

institute: University of Louisville

description: miRNAs PCR assay


title: Illumina NextSeq 500 (Oikopleura dioica)

organism: Oikopleura dioica


city: Bangalore

first: Genotypic

last: technology

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

organism: Mycobacterium tuberculosis

description: Agilent Custom M.tuberculosis Expression  8x15k Array (AMADID: 030010) designed  by Genotypic Technology Private Limited.


title: Agilent-026323 Genotypic Technology designed Custom M. tuberculosis h37Rv Whole Genome 8x15k GE Microarray (Featured ID)

organism: Mycobacterium tuberculosis H37Rv

description:
8x15k Custom Array specifications:
Total number of features on array: 15744
Total number of available features: 15208
Agilent control grid: IS-15744-8-V1_8x15K_Gx_EQC_V20060608
Agilent controls: 536
Total number of probes designed: 12660
Blank features: 2548 (Blank features were filled by randomly selected gene specific probes)
No. of Genes with unique sequence: 4026
Probe Length: 60 mer
Check for Cross hybridization: Yes
Repeat/Vector Masked: Yes
Source: Tuberculist (Web site: http://genolist.pasteur.fr/TubercuList/)

first: Raja

middle: C

last: Mugasimangalam

first: Rohit

middle: N

last: Shukla

first: Shruti

last: Sinha


title: Agilent-082557 CBChuman circRNA array V2.0 [PROBE NAME]

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

description:
Arrays of this design have barcodes that begin with 16082557 or 2582557.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 1500 (Oryza sativa)

organism: Oryza sativa


title: Agilent-040143 human EPI_Hs_8X60_3P_004_GEO_array

city: South San Francisco

first: Janina

last: Reeder

address: 1 DNA Way

department: Bioinformatics

institute: Genentech

manufacture_protocol: See manufacturer's website (www.agilent.com).


title: Illumina HiSeq 4000 (Escherichia coli BW25113)

organism: Escherichia coli BW25113


title: Illumina HiSeq 4000 (Heterobasidion irregulare)

organism: Heterobasidion irregulare


title: NimbleGen Mouse Custom Tiling Array [120509_MM9_BHB_ChIP]

status: Public on Nov 04 2016

city: Edinburgh

first: Nezha

middle: Suzanne

last: Benabdallah

state: Midlothian

address: Crewe Road South

department: Institute of Genetics and Cancer

country: United Kingdom

institute: University of Edinburgh

organism: Mus musculus

description: NCBI mouse mm9

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Lewis-Sigler Institute Homo sapiens 44.5K [HOAL]

city: Stanford

first: Stephen

last: Popper

department: Division of Infectious Diseases, Dept. of Medicine

institute: Stanford University

organism: Homo sapiens

technology: spotted DNA/cDNA

description: blockType=3 xLeft=2000 yTop=5800

manufacturer: Lewis-Sigler Institute Microarray Facility


title: Agilent Human miRNA HmiOAv7

status: Public on May 31 2018

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: Agilent


title: Illumina HiSeq 4000 (Staphylococcus aureus)

organism: Staphylococcus aureus


title: Illumina HiSeq 2500 (Ambystoma mexicanum)

status: Public on Dec 15 2016

organism: Ambystoma mexicanum


title: Illumina HiSeq 2500 (Glycine max)

status: Public on Sep 29 2014

organism: Glycine max


title: Illumina NovaSeq 6000 (Drosophila melanogaster)

status: Public on Jun 26 2018

organism: Drosophila melanogaster


title: BGISEQ-500 (Caenorhabditis elegans)

organism: Caenorhabditis elegans


title: Illumina HiSeq 2500 (Oryza sativa Japonica Group)

status: Public on Apr 02 2014

organism: Oryza sativa Japonica Group


title: Agilent GCCRI Human 105k miRNA-focused v2

status: Public on Mar 31 2012

city: San Antonio

first: Yidong

last: Chen

state: Texas

address: 8403 Floyd Curl Drive, MSC 7784

department: Population Health Sciences

institute: UT Health Science Center at San Antonio

description:
Design ID: 027477

Custom arrays were designed based on the Agilent 2x105K Human Whole Genome Genomic microarray with Agilent’s eArray program (https://earray.chem.agilent.com/earray/), with additional probes that cover all miRNA regions (200 bps before, within and after each miRNA from miRBase v13, with  each probe in triplicates to enhance the reliability). All custom-designed probes were designed in UCSC hg18. Probes from Agilent’s database were lifted-over from hg19 to hg18 (LiftOver tool: http://genome.ucsc.edu).

manufacturer: Custom-design fabricated by Agilent Technologies.

manufacture_protocol: eArray protocol.


title: Agilent-026323 Genotypic Technology designed Custom Mycobacterium tuberculosis h37Rv Whole Genome 8x15k GE Microarray

status: Public on Mar 05 2011


title: Agilent-029297 Human miRNA Microarray v14 Rev.2 (miRNA ID version)

status: Public on Jul 08 2010


title: Agilent-028081 Human Genome CGH + SNP Microarray (Feature Number version)

status: Public on Dec 27 2010

description:
028081_D_20100413

Agilent human genome CGH + SNP 420K microarray design, April 2010

Arrays of this design have barcodes that begin with 16028081 or 2528081.

Orientation:
Features are numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2000 (Bos taurus)

status: Public on Jun 27 2012

organism: Bos taurus


title: Illumina HiSeq 2500 (Solanum lycopersicum)

status: Public on Jan 23 2015

organism: Solanum lycopersicum


title: Illumina HiSeq 1000 (Homo sapiens)

status: Public on Apr 11 2012


title: Illumina HiSeq 2000 (Oryza sativa Japonica Group)

status: Public on Jul 07 2011


title: Illumina HiSeq 2000 (Rattus norvegicus)

status: Public on Nov 04 2011

organism: Rattus norvegicus