title: Illumina HumanImmuno v 1.0 BeadChip

status: Public on Jul 31 2018

city: Leioa

first: Jose Ramon

last: Bilbao

state: Outside the US or Canada

address: Bº Sarriena

department: Genetics, Physical Anthropology and Animal Physiology

country: Spain

institute: University of the Basque Country (UPV/EHU)

organism: Homo sapiens

technology: oligonucleotide beads

distribution: custom-commercial

manufacture_protocol: Infinium® HD Assay Ultra Protocol


title: Fragaria x ananassa FraGenomics 35k

city: CÓRDOBA

first: Francisco

middle: Javier

last: Molina-Hidalgo

state: Cordoba

address: Edif. Severo Ochoa (C6.) Planta Baja-Ala Norte Campus de Rabanales

department: Biochemistry and molecular biology

institute: University of Cordoba

organism: Fragaria x ananassa

technology: in situ oligonucleotide

manufacture_protocol: In accordance with the procedures described in the expression analysis section  Nimblegen Systems Inc.,  http://www.nimblegen.com/.  Each cDNA sample was random-primer labeled with Cy3-nonamers using NimbleGen One-Color DNA Labeling Kits, in accordance with Roche NimbleGen?s standard protocol. One microgram of cDNA was used in the labeling reaction. Using random assignment, each Cy3-labeled cDNA sample was applied to custom-made strawberry 12x135K Arrays format (each slide contains 12 independent arrays, each with 140856 probes covering 35214 genes, 4 probes/target gene).


title: Illumina HiSeq 2500 (Bifidobacterium animalis subsp. lactis)

status: Public on Jul 30 2018

last: GEO

country: USA

organism: Bifidobacterium animalis subsp. lactis

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 2000 (Fusarium oxysporum; Trichoderma guizhouense)

organism:
Fusarium oxysporum
Trichoderma guizhouense


title: Illumina HiSeq 2000 (Trichoderma guizhouense)

organism: Trichoderma guizhouense


title: Illumina HiSeq 2000 (Sinibotia superciliaris)

organism: Sinibotia superciliaris


title: NimbleGen E. coli K12 Gene Expression Array [130108_Ecoli_K12_exp]

city: Madison

first: Inc

last: Nimblegen Systems

state: WI

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

organism: Escherichia coli K-12

description: A 12x72K expression design for 4,254 genes from Escherichia coli K12 with eight 60-mer probe pairs (PM/MM) per gene.  The design includes random GC and other control probes.

distribution: commercial

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Illumina HiSeq 2000 (Ambystoma andersoni)

status: Public on Jul 27 2018

organism: Ambystoma andersoni


title: Illumina HiSeq 2000 (Ambystoma maculatum)

organism: Ambystoma maculatum


title: Illumina HiSeq 2000 (Bacillus subtilis; Pseudomonas chlororaphis)

organism:
Bacillus subtilis
Pseudomonas chlororaphis


title: Illumina NextSeq 500 (Azospirillum brasilense Sp245)

organism: Azospirillum baldaniorum


title: Microarrays of human nuclear encoded tRNAs

status: Public on Apr 20 2019

city: Oxford

first: Irina

last: Chelysheva

address: Roosevelt Dr

department: NDM

country: United Kingdom

institute: University of Oxford

technology: spotted oligonucleotide

distribution: non-commercial

manufacturer: Fraunhofer Institute for Biomedical Research (Potsdam, Germany)

manufacture_protocol:
1. Oligos were arrayed in 384 well plates with a final concentration of 10 µM in 3× SSC/0.01% SDS in a total volume of 25 µl.
2. Arrays were printed onto (3-Glycidyloxypropyl)trimethoxysilane (Sigma) activated glas slides using a contact-spotter (QArray 2, Moleculare Devices).
3. After spotting arrays were incubated overnight at 4°C in a humidified atmosphere and subsequently dried for 30 min at 30°C.
4. Arrays were stored in a dry atmosphere at room temperature until use.


title: NanoString Human Immunology Panel

status: Public on Jul 28 2018

city: Ann Arbor

first: Steven

middle: K

last: Lundy

state: MI

address: 4043 Biomedical Sciences Research Bldg 109 Zina Pitcher Place

department: Internal Medicine

institute: University of Michigan Medical School

technology: other


title: Ion Torrent Proton (Gulosibacter molinativorax)

status: Public on Jul 26 2018

organism: Gulosibacter molinativorax


title: Illumina MiSeq (Oreochromis mossambicus)

organism: Oreochromis mossambicus


title: Illumina HiSeq 4000 (Methylorubrum extorquens)

organism: Methylorubrum extorquens


title: Illumina HiSeq 1500 (Anopheles quadriannulatus)

status: Public on Jul 25 2018

organism: Anopheles quadriannulatus


title: Illumina HiSeq 4000 (Oryctolagus cuniculus)

organism: Oryctolagus cuniculus


title: Illumina HiSeq 1500 (Anopheles coluzzii)

organism: Anopheles coluzzii


title: Illumina HiSeq 1500 (Anopheles merus)

organism: Anopheles merus


title: nCounter Immunology Panel

city: White Oak

first: Mustafa

last: Akkoyunlu

state: MD

address: 10903 New Hampshire Ave,

institute: FDA

organism: Mus musculus

description: Among gene expression codeset profiling 561 genes, 547 immunology-related mouse genes+14 internal reference controls were added.


title: Illumina HiSeq 1500 (Anopheles arabiensis)

organism: Anopheles arabiensis


title: Illumina HiSeq 1500 (Anopheles gambiae)

organism: Anopheles gambiae


title: Illumina HiSeq 4000 (Glycine soja)

organism: Glycine soja


title: USC/ACUIGEN-Agilent-038418 Ostrea edulis 8X15 array

city: LUGO

first: Belen

middle: G

last: Pardo

state: LUGO

address: Avda. Carballo Calero s/n

department: Zoology, Genetics and Physical Anthropology

institute: University of Santiago de Compostela

organism: Ostrea edulis

manufacturer: Acuigen group, Dpto. de Zoología, Genética y Antropología Física,Facultad Veterinaria, Campus de Lugo, Universidade de Santiago de Compostela

manufacture_protocol: An Agilent custom 8 x 15 K oligo-microarraywas used. This microarray contains 6,882 different oligos and two replicates per oligo


title: Agilent-068300 OakLabs Celegans WS241 ArrayXS-200108 (Probe name version)

status: Public on Jul 24 2018

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Caenorhabditis elegans

description: ArrayXS-200108 with WormBase WS241 genome build (OakLabs)

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina MiSeq (Anopheles dirus)

status: Public on Jul 23 2018

organism: Anopheles dirus


title: Ion Torrent PGM (Rhodobacter capsulatus DE442)

organism: Rhodobacter capsulatus DE442


title: Ion Torrent PGM (Rhodobacter capsulatus SB 1003)

organism: Rhodobacter capsulatus SB 1003


title: Illumina MiSeq (Plasmodium vivax)

organism: Plasmodium vivax


title: Illumina HumanCore-24v1-0 SNP array

status: Public on Jul 22 2018

city: Chiba

first: Hirokazu

last: Usui

state: Chiba

address: 1-8-1 Inohana, Chuo-ku

department: Department of Reproductive Medicine

country: Japan

institute: Graduate School of Medicine, Chiba University

organism: Homo sapiens

manufacture_protocol: see Illumina web site


title: Illumina HiSeq 2500 (Nannospalax ehrenbergi)

organism: Nannospalax ehrenbergi


title: [HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate [CDF: HTHGU133PlusPM_Hs_ENTREZG_20]

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
This platform is identical to GPL13158 but a custom cdf environment was used to extract data.

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2500 (unidentified plasmid)

organism: unidentified plasmid


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_21.0.0]

description: Brainarray: HuGene20stv1_Hs_ENTREZG_21.0.0

manufacture_protocol: See manufacturer's web site


title: Agilent-084221 T. denticola 8x15K array

status: Public on Jul 20 2018

city: Chiyoda-ku

first: Kazuyuki

last: Ishihara

state: Tokyo

address: Misakicho 2-1-14

department: Microbiolgy

institute: Tokyo Dental College

organism: Treponema denticola

description: NCBI Reference Sequence VERSION: NC_002967.9

manufacturer: Hokkaido System Science Co., Ltd. (Agilent eArray)


title: Illumina HiSeq 2500 (Acinetobacter phage Abp1)

status: Public on Jul 19 2018

organism: Acinetobacter phage Abp1


title: Illumina HiSeq 2000 (Chelidonium majus)

organism: Chelidonium majus


title: Illumina HiSeq 4000 (Trachemys scripta elegans)

organism: Trachemys scripta elegans


title: Illumina HiSeq 2500 (Populus ussuriensis)

organism: Populus ussuriensis


title: [Clariom_S_Human_HT] Affymetrix Clariom S Pico Assay HT [hta20_Hs_ENTREZG]

status: Public on Jul 21 2018

description: This identical to GPL24324 but the BrainArray (version 21) CDF environmnet was used to extract data.

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 2500 (Mucor circinelloides f. lusitanicus)

organism: Mucor lusitanicus


title: Illumina HiSeq 2500 (Acinetobacter phage AB1)

organism: Acinetobacter phage AB1


title: Illumina HiSeq 2500 (Pseudomonas pseudoalcaligenes)

organism: Ectopseudomonas oleovorans


title: Illumina HiSeq 4000 (Tachysurus fulvidraco x Tachysurus vachelli)


title: Illumina HiSeq 4000 (Populus ussuriensis)


title: TGF-beta Phospho Antibody Array

status: Public on Jul 18 2018

city: Tuebingen

first: Andreas

last: Körner

address: Hoppe-Seyler-Straße 3

department: Clinic of Anesthesiology and Intensive Care Medicine

country: Germany

institute: University of Tuebingen

organism: Mus musculus

technology: antibody


title: Illumina MiSeq (Porphyromonas gingivalis)

organism: Porphyromonas gingivalis


title: Agilent-031104 mpi_uhordei_01 031103

city: Regensburg

first: Urs

last: Lahrmann

address: Am Biopark 9

department: Project Group Personalized Tumor Therapy

institute: Fraunhofer ITEM

organism: Ustilago hordei

description:
Ustilago hordei 3' expression array version 1.0

Arrays of this design have barcodes that begin with 16031104 or 2531104.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2500 (Homo sapiens; Human alphaherpesvirus 1 strain KOS)

organism:
Homo sapiens
Human alphaherpesvirus 1 strain KOS


title: Sequel (Escherichia coli)

status: Public on Jul 17 2018

organism: Escherichia coli


title: Illumina HiSeq 2500 (Heligmosomoides polygyrus bakeri)

organism: Heligmosomoides polygyrus bakeri


title: [Clariom_S_Human_HT] Affymetrix Clariom S Pico Assay HT [clariomshumanhthsentrezgprobe_22.0.0]

organism: Homo sapiens

description: This identical to GPL24324 but the BrainArray (version 22) CDF environmnet was used to extract data. The cdf can be found at the link below.

relation: Alternative to: GPL24324 (alternative CDF [official])


title: Illumina HiSeq 2500 (Saccharina japonica)

status: Public on Jul 16 2018

organism: Saccharina japonica


title: 454 GS FLX Titanium (Drosophila melanogaster)

organism: Drosophila melanogaster


title: Illumina MiSeq (Populus trichocarpa)

organism: Populus trichocarpa


title: Illumina MiSeq (Populus deltoides)

organism: Populus deltoides


title: Illumina HiSeq 2500 (Saccharomyces eubayanus)

organism: Saccharomyces eubayanus


title: NextSeq 550 (Escherichia coli BW25113)

organism: Escherichia coli BW25113


title: Exiqon Human miRCURY LNA Universal RT miRNA PCR Human Serum/Plasma focus panel (V3.0)

status: Public on Jul 13 2018

technology: RT-PCR

description: PCR assay

manufacture_protocol: see qiagen website  https://www.qiagen.com/dk/shop/pcr/primer-sets/mircury-lna-mirna-focus-pcr-panels/?catno=YAHS-106Y#productdetails


title: Illumina NextSeq 500 (Rattus norvegicus albus)

organism: Rattus norvegicus albus


title: HiSeq X Ten (Escherichia coli)


title: JPT RepliTope™ Multiwell Peptide Microarray HBV (large envelope protein)

city: Vienna

first: Peter

last: Hettegger

address: Giefinggasse 4

department: Center for Health and Bioresources

country: Austria

institute: Austrian Institute of Technology

organism: Hepatitis B virus adw/991

technology: spotted peptide or protein


title: JPT RepliTope™ Multiwell Peptide Microarray EBV (EBNA1)

organism: human gammaherpesvirus 4


title: BGISEQ-500 (Hordeum vulgare)

organism: Hordeum vulgare


title: Illumina HiSeq 2000 (Equus asinus africanus)

status: Public on Jul 11 2018

organism: Equus asinus africanus


title: Exiqon Ready-to-use Serum microRNA PCR Panels I and II - Mouse & Rat

status: Public on Jul 10 2018

city: Athens

first: Mandi

middle: M.

last: Murph

state: GA

address: 250 West Green Street, Room 312

department: Pharmaceutical & Biomedical Sciences

institute: University of Georgia

organism:
Mus musculus
Rattus norvegicus

description: Serum microRNA panels for mouse samples.

manufacture_protocol: See manufacturer's website


title: Illumina HiSeq 2500 (Pseudomonas fluorescens SBW25)

organism: Pseudomonas [fluorescens] SBW25


title: Illumina HiSeq 2500 (Zonotrichia albicollis)

status: Public on Jul 12 2018

organism: Zonotrichia albicollis


title: Illumina NextSeq 500 (Bos indicus x Bos taurus)

organism: Bos indicus x Bos taurus


title: [ADXPCv1a520642] Almac Diagnostics Prostate Disease Specific Array (DSA)

city: Belfast

first: Suneil

last: Jain

address: 97 Lisburn Road

institute: Queen's University Belfast

manufacture_protocol: See manufacturer's web site.


title: Illumina NextSeq 500 (Cryptococcus neoformans var. grubii)

organism: Cryptococcus neoformans


title: Illumina HiSeq 2500 (Erigeron canadensis)

organism: Erigeron canadensis


title: UMB Mouse FirePlex miRNA microarray

city: Baltimore

first: Lin

last: Zou

address: 20 Penn Street, HSF II-GS003C

department: Anesthesiology

institute: University of Maryland School Of Medicine

organism: Mus musculus

description:
FirePlex bead-based technology
UMB-Mouse-exosomal RNA mutiplex miRNA microarray


title: Illumina NextSeq 500 (Meloidogyne incognita)

organism: Meloidogyne incognita


title: Illumina NextSeq 500 (Chaetomium thermophilum)

status: Public on Jul 09 2018

organism: Thermochaetoides thermophila


title: Illumina HiSeq 2500 (Rhodoluna lacicola)

status: Public on Jul 06 2018

organism: Rhodoluna lacicola


title: Illumina HiSeq 2500 (Aspergillus nidulans FGSC A4)

organism: Aspergillus nidulans FGSC A4


title: Illumina HiSeq 2500 (Aurantimicrobium sp. MWH-Mo1)

organism: Aurantimicrobium photophilum


title: Illumina NovaSeq 6000 (Triticum aestivum)

status: Public on Jul 31 2018

organism: Triticum aestivum


title: Illumina HiSeq 2000 (Quercus robur; Tuber magnatum)

status: Public on Jul 05 2018

organism:
Quercus robur
Tuber magnatum


title: Illumina HiSeq 2000 (Tuber magnatum)

organism: Tuber magnatum


title: Agilent-033483 Mouse_Special_8x60 028005 (Feature number version)

status: Public on Jul 07 2018

city: Liverpool

first: Kim

last: Clarke

address: Crown Street

institute: University of Liverpool

description:
SurePrint G3 Mouse GE 8x60K Microarray

Arrays of this design have barcodes that begin with 16033483 or 2533483.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 4000 (Mycobacterium tuberculosis)

organism: Mycobacterium tuberculosis


title: Illumina HiSeq 2500 (Populus tomentosa)

organism: Populus tomentosa


title: Illumina HiSeq 2000 (Barnesiella viscericola)

organism: Barnesiella viscericola


title: Illumina HiSeq 2500 (Pseudomonas putida KT2440)

organism: Pseudomonas putida KT2440


title: Illumina HiSeq 1000 (Solanum tuberosum)

organism: Solanum tuberosum


title: Illumina NextSeq 500 (Oreochromis niloticus)

organism: Oreochromis niloticus


title: HiSeq X Ten (Streptomyces natalensis)

status: Public on Jul 04 2018

organism: Streptomyces natalensis


title: Illumina MiniSeq (Citrobacter rodentium)

status: Public on Jul 03 2018

organism: Citrobacter rodentium


title: Illumina HiSeq 2000 (Salix matsudana)

organism: Salix matsudana


title: NextSeq 550 (Xenopus laevis)

organism: Xenopus laevis


title: Illumina HiSeq 3000 (Talinum fruticosum)

organism: Talinum fruticosum


title: HiSeq X Ten (Citrullus lanatus)

organism: Citrullus lanatus


title: Illumina NextSeq 500 (Proteus mirabilis)

organism: Proteus mirabilis


title: Illumina NovaSeq 6000 (Escherichia coli)

status: Public on Jul 23 2018

organism: Escherichia coli


title: HiSeq X Ten (Pyrus x bretschneideri)

organism: Pyrus x bretschneideri


title: nCounter pancancer-immune-profiling-panel

city: Memphis

first: Meiyun

last: Fan

address: 19 S. Manassas Street

institute: University of Tennessee

organism: Homo sapiens

manufacture_protocol: nCounter XT Assay User Manuale


title: Illumina HiSeq 4000 (Cucumis sativus)

last: GEO

organism: Cucumis sativus


title: HiSeq X Ten (Glycine max)

organism: Glycine max


title: HiSeq X Ten (Fragaria vesca)

organism: Fragaria vesca


title: Illumina HiSeq 4000 (Carica papaya)

organism: Carica papaya


title: Illumina HiSeq 4000 (Fragaria vesca)


title: HiSeq X Ten (Carica papaya)


title: HiSeq X Ten (Cucumis melo)

organism: Cucumis melo


title: [AMBY_002a520748F] Affymetrix Ambystoma mexicanum

city: Lexington

first: Varun

middle: Bhamidipati

last: Dwaraka

state: Kentucky

address: 741 South Limestone St.

department: Spinal Cord and Brain Injury Research Center

institute: University of Kentucky

organism: Ambystoma mexicanum

manufacture_protocol: Affymetrix


title: HiSeq X Ten (Prunus persica)

organism: Prunus persica


title: HiSeq X Ten (Malus domestica)

organism: Malus domestica


title: HiSeq X Ten (Musa acuminata AAA Group)

organism: Musa acuminata AAA Group


title: Illumina MiSeq (Candida parapsilosis; Planoprotostelium fungivorum)

organism:
Candida parapsilosis
Planoprotostelium fungivorum


title: Illumina MiSeq ([Candida] glabrata; Candida albicans; Planoprotostelium fungivorum)

organism:
Candida albicans
Nakaseomyces glabratus
Planoprotostelium fungivorum


title: Illumina HiSeq 2500 (Schistosoma japonicum)

status: Public on Jul 02 2018

organism: Schistosoma japonicum


title: Illumina HiSeq 2500 (Schistosoma haematobium)

organism: Schistosoma haematobium


title: Illumina HiSeq 4000 (Argopecten irradians)

organism: Argopecten irradians


title: S.aureus_Custom_Agilent 15k_v1

status: Public on Jul 01 2018

city: Greifswald

first: Ulrike

last: Mäder

address: F.-L.-Jahn-Str. 15A

department: Functional Genomics

institute: University Medicine Greifswald

organism: Staphylococcus aureus subsp. aureus NCTC 8325

manufacture_protocol: The arrays are produced by Agilent Technologies SurePrint technology (for details, see manufacturer's web site). Each protein coding gene of Staphylococcus aureus NCTC 8325 (GenBank record CP000253) is represented by 1 to 5 long oligonucleotides.


title: Agilent-073108 Schmidtea mediterranea 8*60K Smed_microarray_Jing_xshan

city: Shanghai

first: Qing

last: Jing

state: Shanghai

address: 320 Yue Yang Road

department: Institute of Health Sciences

country: China

institute: Shanghai Institutes for Biological Sciences, CAS

organism: Schmidtea mediterranea

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: [SoyGene-1_1-st] Affymetrix Soybean Gene 1.1 ST Array [probeset version]

status: Public on Feb 01 2018

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

description:
#%create_date=Mon May 12 10:55:32 2014 PDT
#%chip_type=SoyGene-1_1-st-v1
#%lib_set_name=SoyGene-1_1-st
#%lib_set_version=v1
#%genome-version=glyma1tm
#%genome-version-ucsc=glyma1tm
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-version-ucsc=glyma1
#%netaffx-annotation-date=2013-08-30
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-tabular-data-version=1.0
#%netaffx-annotation-tabular-format-version=1.0
#%netaffx-annotation-data-type=probe_set
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=


title: Illumina NovaSeq 6000 (Zea mays)

organism: Zea mays


title: Custom Nanostring nCounter human radiosensitivity assay with standard XT-formulation

city: Lund

first: Martin

last: Sjöström

address: Scheelevägen 2

country: Sweden

institute: Lund University

organism: Homo sapiens

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: [SoyGene-1_1-st] Affymetrix Soybean Gene 1.1 ST Array [transcript ID version]

status: Public on Mar 08 2016

organism: Glycine max

description:
#%create_date=Mon May 12 10:48:08 2014 PDT
#%chip_type=SoyGene-1_1-st-v1
#%lib_set_name=SoyGene-1_1-st
#%lib_set_version=v1
#%genome-version=glyma1tm
#%genome-version-ucsc=glyma1tm
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-version-ucsc=glyma1
#%netaffx-annotation-date=2013-08-30
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-tabular-data-version=1.0
#%netaffx-annotation-tabular-format-version=1.0
#%netaffx-annotation-data-type=transcript_cluster
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
## probeset_id refers to the transcript cluster id and is required for ExACT software compatibility.


title: Illumina HiSeq 2000 (unidentified plasmid)

status: Public on Jan 26 2016

organism: unidentified plasmid


title: Illumina NextSeq 500 (Clostridioides difficile)

organism: Clostridioides difficile


title: HiSeq X Ten (Vitis vinifera)

organism: Vitis vinifera


title: Universal PBM 4x44k (Bulyk lab design)

status: Public on Apr 03 2018

city: Durham

first: Raluca

last: Gordan

state: NC

address: 101 Science Dr, CIEMAS 2179

department: Center for Genomic and Computational Biology

institute: Duke University

manufacture_protocol: In situ oligosynthesized array with synthetic sequences that cover all possible 10-mers (Berger et al., Nature Biotechnology 2006)


title: Illumina HiSeq 2500 (Schistosoma mansoni)

status: Public on Mar 07 2016

organism: Schistosoma mansoni


title: Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Gene Name Version]

city: Bethesda

last: admin

institute: NCBI/NLM/NIH

relation: Alternative to: GPL20844 (Feature Number Version)


title: NimbleGen E. coli K12 Gene Expression Array [071112_Ecoli_K12_EXP]

status: Public on Nov 17 2011

city: Madison

first: Inc

last: Nimblegen Systems

address: 504 S. Rosa Road

institute: NimbleGen Systems, Inc.

organism: Escherichia coli K-12

description: NimbleGen design name 071112 Ecoli K12 EXP X4, NimbleGen Catalog No. A6697-00-01.  A 4x72K expression design for 4,254 genes from Escherichia coli K12 with eight 60-mer probe pairs (PM/MM) per gene.  Each probe is replicated 2 times.  The design includes random GC and other control probes.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: [CytoScanHD_Array] Affymetrix CytoScan HD Array

status: Public on Oct 03 2012

description:
#%create_date=2011-12-01 GMT-08:00 10:25:44
#%chip_type=CytoScanHD_Array
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=GRCh37
#%genome-version-create_date=2009-02-00
#%dbSNP_date=2010-09-23
#%dbSNP_version=132
#%dgv-date=2010-10-00
#%dgv-version=10
#%hapmap-date=2008-01-08
#%hapmap-version=23
#%netaffx-annotation-date=2011-12-01
#%netaffx-annotation-netaffx-build=32.1
#%netaffx-annotation-tabular-format-version=1.0
#%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver
#%netaffx-annotation-docgen-version=cluster_friendly_submission

#%create_date=2011-12-01 GMT-08:00 10:25:09
#%chip_type=CytoScanHD_Array
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=GRCh37
#%genome-version-create_date=2009-02-00
#%dbSNP_date=2010-09-23
#%dbSNP_version=132
#%dgv-date=2010-10-00
#%dgv-version=10
#%netaffx-annotation-date=2011-12-01
#%netaffx-annotation-netaffx-build=32.1
#%netaffx-annotation-tabular-format-version=1.0
#%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver
#%netaffx-annotation-docgen-version=cluster_friendly_submission
##This database/product contains information from the Online Mendelian Inheritance in Man(R) (OMIM(R)) database, which has been obtained under
a license from the Johns Hopkins University.  This database/product does not represent the entire, unmodified OMIM(R) database, which is availa
ble in its entirety at www.ncbi.nlm.nih.gov/omim/.


title: Illumina NextSeq 500 (Schizosaccharomyces pombe)

status: Public on Jun 19 2015

organism: Schizosaccharomyces pombe


title: Illumina Genome Analyzer II (Mus musculus)

status: Public on Sep 21 2009

organism: Mus musculus


title: [MTA-1_0] Affymetrix Mouse Transcriptome Array 1.0 [transcript (gene) CDF version]

status: Public on May 28 2015

description:
This platfrom configures to MTA-1_0.r1.gene.cdf. Annotation was derived from the Affymetrix annotation file MTA-1_0.na35.mm10.transcript.csv:

#%create_date=Wed Apr  1 16:56:09 2015 PDT
#%chip_type=MTA-1_0
#%lib_set_name=MTA-1_0
#%lib_set_version=r1
#%genome-species=Mus musculus
#%genome-version=mm10
#%genome-version-ucsc=mm10
#%genome-version-ncbi=38
#%genome-version-create_date=2011-12-00
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Mus musculus
#%genome-lifted_from-version-ucsc=mm10
#%genome-lifted_from-version-ncbi=38
#%netaffx-annotation-date=2014-10-31
#%netaffx-annotation-netaffx-build=35

relation: Alternative to: GPL20775 (Affymetrix Transcript CSV Version)

relation: Alternative to: GPL23535 (Alternative CDF [Brainarray mta10_Mm_ENTREZG_v20])

relation: Alternative to: GPL25385 (Alternative CDF [Brainarray mta10_Mm_ENSG_20.0])


title: [miRNA-3] Affymetrix Multispecies miRNA-3 Array

status: Public on Dec 17 2012

organism: synthetic construct

description:
#%chip_type=miRNA-3_0 or miRNA-3_1
#%create_date=Mon Dec 3, 2012
#
# miRNAs/stem-loops:
# * An annot name generally represents one genome location, but may refer to multiple annotations because of multiple mature products delineated by "-3p" and "-5p", or ".1" and ".2".
# * Also, those with a '-star' are minor products, and those without '-star' or any other aforementioned suffix are considered the major product.
# * Probeset IDs may appear more than once because the miRNA was mapped to multiple locations in the genome, and the annot names may have a "-1", "-2", etc type of suffix.
# * Probeset IDs with a letter suffix (eg, fru-miR-23a and fru-miR-23b) are related miRNAs where the sequence is highly similar.
# sno/sca:
# * The sequences for the sno/sca and hairpin probesets are the entire sequences, not just the SIF regions.


title: Illumina HiSeq 4000 (Saccharomyces cerevisiae)

status: Public on Mar 25 2016

organism: Saccharomyces cerevisiae