title: Illumina HiSeq 2000 (Oidiodendron maius Zn; Vaccinium myrtillus)

status: Public on Aug 30 2018

last: GEO

country: USA

organism:
Vaccinium myrtillus
Oidiodendron maius Zn

technology: high-throughput sequencing

distribution: virtual


title: Illumina NextSeq 500 (Marchantia polymorpha)

status: Public on Aug 31 2018

organism: Marchantia polymorpha


title: Illumina HiSeq 2000 (Oidiodendron maius Zn)

organism: Oidiodendron maius Zn


title: ZYU Human cells 4v1.0

city: Zunyi

first: Kunming

last: Wen

address: 149 DaLian Road, Zunyi, Guizhou 563000, People's Republic of China

country: China

institute: The Affiliated Hospital of Zunyi Medical University

organism: Homo sapiens

technology: spotted oligonucleotide

description: LncRNA+mRNA Human Gene Expression Microarray V4.0, 4x180K

distribution: custom-commercial


title: 4plex_Brassica_076686

status: Public on Aug 29 2018

city: Orsay

first: Stéphanie

last: Pateyron

address: Rue de Noetzlin _ Batiment 630

country: France

institute: IPS2_Institute of Plant Sciences Paris-Saclay

organism: Brassica oleracea

technology: in situ oligonucleotide

description: Forward and Reverse, 1 oligo/target sequence unigene:3 technicals replicats for forward and 2 technicals replicats for reverse. Number of sequences/target:33695 probes sens in triplicat + 33695 probes antisens in duplicat + 27 CATMA controls in duplicat.

first: Sandrine

last: Balzergue

first: Sylvain

last: Dumez


title: Neisseria meningitidis Molecular biology Lab, AIMB, GSK Vaccines Protein Microarray

city: Siena

first: Erika

last: Bartolini

state: Italy

address: Via Fiorentina 1

department: AIMB

country: Italy

institute: GSK Vaccines

organism: Neisseria meningitidis

technology: spotted peptide or protein

distribution: non-commercial

manufacture_protocol: Purified recombinant proteins were diluted at final concentration of 0.5 mg/ul in 40% glycerol and transferred into 384-well microtiterplates. One droplet of 0.2 nL protein solution was deposited per spot on nitrocellulose-coated slides (FAST slides, Schleicher and Schuell) using the non-contact printer Marathon Spotter (Arrayjet, Edinburgh, UK). Printing was performed in a cabinet with controlled humidity and temperature (55-60% and 12 °C respectively), resulting in spots of 90-110 μm in diameter range. Each protein was printed in 8 replicates on each slide. Printed protein microarrays were kept at room temperature for 5 hours, dried under a stream of nitrogen and store a 4°C.


title: Illumina HiSeq 2500 (Saccharomyces cerevisiae W303)

organism: Saccharomyces cerevisiae W303


title: Illumina HiSeq 4000 (Bos taurus; Theileria annulata)

status: Public on Aug 28 2018

organism:
Theileria annulata
Bos taurus


title: AB 5500 Genetic Analyzer (Xenopus laevis)

organism: Xenopus laevis


title: NextSeq 550 (Mycobacterium tuberculosis)

status: Public on Aug 27 2018

organism: Mycobacterium tuberculosis


title: Ion Torrent Proton (Phytophthora infestans; Solanum tuberosum)

organism:
Solanum tuberosum
Phytophthora infestans


title: Illumina HiSeq 4000 (Aspergillus niger)

organism: Aspergillus niger


title: Illumina HiSeq 2500 (Bubalus bubalis)

organism: Bubalus bubalis


title: Illumina MiniSeq (Vibrio sp. dhg)

organism: Vibrio sp. dhg


title: Illumina HiSeq 2500 ([Candida] glabrata; Candida albicans)

organism:
Candida albicans
Nakaseomyces glabratus


title: Agilent-067559 GenetiSure Pre-Screen Array 8x60K  G5965A

status: Public on Aug 24 2018

city: Taipei

first: Ching-Fei

last: Li

address: No.155, Sec.2, Linong Street

country: Taiwan

institute: YM University

description:
Arrays of this design have barcodes that begin with 16067559 or 2567559

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2500 ([Candida] glabrata)

organism: Nakaseomyces glabratus


title: Illumina NextSeq 500 (Bos taurus; Homo sapiens; Rattus norvegicus)

organism:
Homo sapiens
Bos taurus
Rattus norvegicus


title: Illumina NextSeq 500 (Coturnix japonica)

organism: Coturnix japonica


title: HiSeq X Ten (Canis lupus dingo)

organism: Canis lupus dingo


title: Illumina HiSeq 2500 (Naumovozyma castellii)

organism: Naumovozyma castellii


title: Agilent-040150 EMBL_rel18_30rep 031181

status: Public on Aug 25 2018

city: Heidelberg

first: Jan

last: Provaznik

state: Baden-Wuerttemberg

address: Meyerhofstr. 1

department: Genomics Core Facility

country: Germany

institute: EMBL Heidelberg

organism: Homo sapiens

description:
Arrays of this design have barcodes that begin with 16040150 or 2540150.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: commercial


title: HiSeq X Ten (Malus pumila; Penicillium expansum)

organism:
Penicillium expansum
Malus pumila


title: Illumina NextSeq 500 (Moringa oleifera)

organism: Moringa oleifera


title: NanoString nCounter Dx Human Stem Cell Panel

city: Herston

first: Berit

last: Genz

state: Queensland

address: 300 Herston Road

department: Cell and Molecular Biology

country: Australia

institute: QIMR Berghofer Medical Research Institute

technology: other


title: Duke/RG_AA_T7Primase_v1

status: Public on Aug 23 2018

city: Durham

first: Raluca

last: Gordan

state: NC

address: 101 Science Dr, CIEMAS 2179

department: Center for Genomic and Computational Biology

institute: Duke University

organism: synthetic construct

manufacture_protocol: Agilent Technologies


title: Illumina HiSeq 2500 (Gossypium barbadense)

organism: Gossypium barbadense


title: Human Angiogenesis Array G1000

city: Al-Qadysia

first: Ahmed

middle: Majeed

last: Al-Shammari

state: Baghdad

department: Experimental Therapy

country: Iraq

institute: Mustansiriyah University, Iraqi Center for Cancer and medical Genetic Research

technology: antibody

manufacture_protocol: The RayBio® G-Series Cytokine Antibody Array is a glass slide that is a highly sensitive approach to simultaneously detect multiple cytokine expression levels from diverse sample types


title: Ion Torrent Proton (Aspergillus niger)

status: Public on Aug 22 2018


title: Illumina HiSeq 4000 (Drosophila melanogaster; Homo sapiens)

status: Public on Aug 20 2018

organism:
Drosophila melanogaster
Homo sapiens


title: Illumina HiSeq 2000 (Saitozyma podzolica)

organism: Saitozyma podzolica


title: Illumina HiSeq 2500 (Canis lupus familiaris; Influenza A virus (A/Puerto Rico/8/1934(H1N1)))

organism:
Canis lupus familiaris
Influenza A virus (A/Puerto Rico/8/1934(H1N1))


title: [PrimeView] Affymetrix Human Gene Expression Array [Brainarray ENTREZG Version 22]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: This is identical to GPL15207 but a custom CDF environment was used to extract data [Brainarray ENTREZG (version 22)].

manufacture_protocol: See details from Affymetrix.


title: Illumina HiSeq 2500 (Influenza A virus (A/Puerto Rico/8/1934(H1N1)))


title: Illumina NextSeq 500 (synthetic RNA)

status: Public on Aug 21 2018

organism: synthetic RNA


title: Illumina NextSeq 500 (Homo sapiens; Influenza A virus (A/Puerto Rico/8/1934(H1N1)))

organism:
Homo sapiens
Influenza A virus (A/Puerto Rico/8/1934(H1N1))


title: Illumina NextSeq 500 (Fusarium verticillioides)

organism: Fusarium verticillioides


title: Illumina NextSeq 500 (Canis lupus familiaris; Influenza A virus (A/Puerto Rico/8/1934(H1N1)))


title: Illumina HiSeq 2500 (Oryza sativa f. spontanea)

status: Public on Aug 17 2018

organism: Oryza nivara


title: BGISEQ-500 (Nannochloropsis sp.)

organism: Nannochloropsis sp.


title: Illumina HiSeq 2500 (Homo sapiens; Influenza A virus (A/Puerto Rico/8/1934(H1N1)))


title: Human 50-mer oligo library from MWGBiotech Oligo Sets

city: Atlixco

first: Verónica

last: Vallejo-Ruiz

state: Puebla

address: Km 4.5 Carretera Federal Atlixco-Metepec

department: Centro de Investigación Biomédica de Oriente

country: Mexico

institute: Instituto Mexicano del Seguro Social

manufacture_protocol:
Printing of arrays. Human 50-mer oligo library set ?A? from MWGBiotech Oligo Sets (http:/www.mwgbiotech.com) was used. It contains 10,000 gene specific oligonucleotide probes representing the best-annotated genes from human. Oligo library was resuspended to 50µM in Micro Spotting solution (ArrayIt Brand Products.). SuperAmine coated slides 25x75 mm (TeleChem International INC) were printed in duplicate, and fixed at 80°C for 4 hours. For pre-hybridization the slides were re-hydrated with water vapor at 60°C, and fixed with two cycles of UV light (1200J). After boiling for two minutes at 92°C, slides were washed with 95% ethanol for one minute and prehybridzed in 5X SSC, 0.1% SDS and 1% BSA for one hour at 42°C. The slides were washed and dried for further hybridization.
Probe preparation and hybridization to arrays. 10 µg of total RNA were used for cDNA synthesis incorporating dUTP-Alexa555 or dUTP-Alexa647 employing the Firs-Strand cDNA labeling kit (Invitrogen). Incorporation of fluorophore was analyzed by using the absorbance at 555 nm for Alexa555 and 650 nm for Alexa647. Equal quantities of labeled cDNA were hybridized using hybridization solution UniHyb (TeleChem International INC). The arrays were incubated for 14 h at 42°C, and then washed tree times with 1X SCC, 0.05 % SDS at room temperature.
Data acquisition and analysis of array images. Acquisition and quantification of array images was performed in GenePix 4100A with its accompanying software GenePix from Molecular Devices. All images were captured using 10µm resolution. For each spot the Alexa555 and Alexa647 density mean value and background mean value were calculated with software ArrayPro Analyzer from Media Cibernetics.


title: Illumina NextSeq 500 (Sinorhizobium meliloti)

organism: Sinorhizobium meliloti


title: Illumina HiSeq 4000 (Drosophila melanogaster; Mus musculus)

organism:
Drosophila melanogaster
Mus musculus


title: Agilent-033621 Oryzon_Human_Expression_WGA_eArrayN6_2x105K_Control Grid IS-105072-2-V1_105K_GX_EQC_V20060608

status: Public on Aug 19 2018

city: Cornella de Llobregat

first: Tamara

last: Maes

state: Barcelona

address: Carrer Sant Ferran 74

department: R&D

country: Spain

institute: Oryzon Genomics S.A.

description:
Arrays of this design have barcodes that begin with 16033621 or 2533621.

Please note that;
[1] the AMAIDID number (014905) used for ordering corresponds to the agilent design ID (033621)
[2] 033621_D_GEO_20110707.txt: the original Agilent design file in GEO format
[3] AgilentOryzonCrossRef_033621.txt: the Agilent-Oryzon cross-reference file links the oligo on each spot to a corresponding ID
[4] Oryzon_Human_Expression_WGA-geneIDTable_033621.txt: annotataio for each identifier

The array is in a 2 x 105K human GE array format, each array has triplicate gene probes and a large number of replicate control probes of different kinds. Raw data are obtained by Agilent Feature extraction software but processing is done with proprietary in-house software. Each 105K array contains triplicates of each gene probe (sometimes several probes/genes); and approx. 2000-plicate of each Zea Mays control probe (used to perform spatial compensation, background assessment, variability assessment for outlier elimination). The calculations generate fold change files (only the human genes) from the raw data files. Further information on the array:
Name: eArray-N6
Design ID:033621
Design Format: 2 X 105K
Control Grid:IS-105072-2-V1_105K_GX_EQC_V20060608


title: HiSeq X Ten (Eisenia fetida)

organism: Eisenia fetida


title: Illumina MiSeq (Clostridium drakei)

status: Public on Aug 14 2018

organism: Clostridium drakei


title: Illumina HiSeq 2500 (Human immunodeficiency virus)

status: Public on Aug 16 2018

organism: Human immunodeficiency virus


title: Illumina HiSeq 2500 (Tachysurus fulvidraco)

organism: Tachysurus fulvidraco


title: Illumina HiSeq 2500 (Streptomyces avermitilis)

status: Public on Aug 15 2018

organism: Streptomyces avermitilis


title: Illumina HiSeq 2500 (Tachysurus fulvidraco x Tachysurus vachelli)


title: Illumina HiSeq 2000 (Pyrus ussuriensis)

status: Public on Aug 13 2018

organism: Pyrus ussuriensis


title: HiSeq X Ten (Euplotes vannus)

status: Public on Aug 10 2018

organism: Euplotes vannus


title: Illumina HiSeq 2500 (Malassezia pachydermatis)

status: Public on Aug 09 2018

organism: Malassezia pachydermatis


title: Illumina HiSeq 3000 (Rhodobacter capsulatus DE442)

status: Public on Aug 03 2018

organism: Rhodobacter capsulatus DE442


title: Arraystar Mouse LncRNA microarray V3B (Agilent-055750 custom Probe Name version)

city: Shanghai

first: LEI

last: SHEN

state: State...

address: Feng lin road 180

department: Department of General Surgery

institute: Zhongshan Hospital, Fudan University

organism: Mus musculus

description: Platform table includes controls.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina NextSeq 500 (Octopus bimaculoides)

status: Public on Aug 04 2018

organism: Octopus bimaculoides


title: Illumina HiSeq 3000 (Octopus bimaculoides)


title: Illumina HiSeq 2500 (Cronobacter sakazakii)

status: Public on Aug 06 2018

organism: Cronobacter sakazakii


title: Illumina HiSeq 3000 (Rhodobacter capsulatus SB 1003)

organism: Rhodobacter capsulatus SB 1003


title: Illumina MiSeq (Corynebacterium glutamicum ATCC 13032)

status: Public on Aug 02 2018

organism: Corynebacterium glutamicum ATCC 13032


title: Illumina NextSeq 500 (Prochlorococcus marinus str. NATL2A)

status: Public on Aug 07 2018

organism: Prochlorococcus marinus str. NATL2A


title: Illumina NextSeq 500 (Strigamia maritima)

status: Public on Aug 01 2018

organism: Strigamia maritima


title: Ion Torrent S5 (Drosophila melanogaster)

organism: Drosophila melanogaster


title: Illumina HiSeq 1500 (Strigamia maritima)


title: UMMS/Kang Lab Mus musculus Tgd17 progenitor 48-gene RT-PCR array

city: Worcester

first: Nicholas

last: Spidale

state: MA

address: 368 Plantation St.

department: Pathology

institute: University of Massachusetts Medical School

technology: RT-PCR

description: PCR assay

manufacture_protocol: Primers were selected from previous publications, PrimerBank, or designed using PrimerBlast with the following parameters:  amplicon size 70-200, optimal Tm 60C, 1 primer must span exon junction


title: Illumina HiSeq 2000 (Populus tremula x Populus tremuloides)

organism: Populus tremula x Populus tremuloides


title: Illumina MiSeq (Saccharomyces cerevisiae x Saccharomyces uvarum)


title: NimbleGen 110505_AB_MM9_regions_ChIP tiling array

city: Edinburgh

first: nick

last: gilbert

address: Crewe Rd

department: MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine

country: United Kingdom

institute: University of Edinburgh

description:
MM9
custom tilling array covering a 66 Mb region around Pax6 (Chr2:75,000,000-141,000,000) mm9.

manufacture_protocol: NimbleGen


title: [PrimeView] Affymetrix Human Gene Expression Array [Brainarray ENTREZG Version 17]

status: Public on Jun 02 2016

organism: Homo sapiens

description: This is identical to GPL15207 but a custom CDF environment was used to extract data [Brainarray (version 17)].


title: Phalanx Human lncRNA OneArray v1_mRNA

status: Public on Sep 20 2016

city: Hsinchu City

first: Rachel

last: Huang

address: 6F., No.6, Keji 5th Rd., East Dist.

institute: Phalanx Biotech Group

manufacture_protocol: See http://www.phalanxbiotech.com/ for updated protocols


title: Illumina NextSeq 500 (Prochlorococcus marinus str. MIT 9312)

last: GEO

organism: Prochlorococcus marinus str. MIT 9312


title: Agilent-079797 Daphnia magna DGC v2

status: Public on Jul 31 2018

city: Barcelona

first: Bruno

last: Campos

address: jordi girona, 18, 18

department: Environmental Chemistry

institute: IDAEA-CSIC

organism: Daphnia magna

description:
versión, similar to v1, but including the replicate prbes

Arrays of this design have barcodes that begin with 16079797 or 2579797.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NIA Mouse 17K set A

city: Portland

first: Marina

last: Guizzetti

state: OR

address: 3710 SW US Veterans Hospital Rd

department: Behavioral Neuroscience

institute: Oregon Health & Science University; Portland VA Research Service

technology: spotted DNA/cDNA

manufacture_protocol: The mouse 17K cDNA microarray contains 16,897 features, which include approximately 12,341 unique genes across Set A and Set B platforms. Set A contains 8448 cDNA spots.


title: NIA Mouse 17K set B


title: Illumina HiSeq 4000 (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina NextSeq 500 (Neurospora crassa)

status: Public on Jul 06 2015

organism: Neurospora crassa


title: HartlLab Drosophilamelanogaster PCRproducts 22k

status: Public on Nov 15 2007

city: Cambridge

first: Bernardo

last: Lemos

address: 16 Divinity Avenue, Room 2105

institute: Harvard University

manufacture_protocol: Printed in house using purified PCR products


title: Agilent-064721 D. rerio Zv9 8x60K high-density oligonucleotide microarray.

city: Rennes

first: Aurelie

last: LE CAM

address: Campus de Beaulieu

department: PHASE

institute: INRA

organism: Danio rerio

description:
Arrays of this design have barcodes that begin with 16064721 or 2564721.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: [HG-U133B] Affymetrix Human Genome U133B Array

status: Public on Mar 11 2002

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 21, 2012: annotation table updated with netaffx build 32
July 01, 2016: annotation table updated with netaffx build 35

relation: Alternative to: GPL9742 (Alternative CDF)

relation: Alternative to: GPL19180 (CDF: v16 ENTREZG)

manufacture_protocol:
see manufacturer's web site

The U133 set includes 2 arrays with a total of 44928 entries and was indexed 29-Jan-2002.
The set includes over 1,000,000 unique oligonucleotide features covering more than 39,000 transcript variants, which in turn represent greater than 33,000 of the best characterized human genes.
Sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from Build 133 of UniGene (April 20, 2001) and refined by analysis and comparison with a number of other publicly available databases including the Washington University EST trace repository and the University of California, Santa Cruz golden-path human genome database (April 2001 release). In addition, ESTs were analyzed for untrimmed low-quality sequence information, correct orientation, false priming, false clustering, alternative splicing and alternative polyadenylation.


title: [TR_RCH2a520699F] Rhodobacter capsulatus

status: Public on Dec 14 2013

city: Ankara

first: Nilufer

last: Erkal

address: Üniversiteler Mahallesi

country: Turkey

institute: Mİddle East Technical University

organism: Rhodobacter capsulatus

manufacture_protocol: Affymetrix


title: Genometry L1000™ Expression Profiling

status: Public on Aug 22 2018

first: Justin

last: Lamb

address: 37 Spinelli Place

institute: Genometry, Inc.

technology: oligonucleotide beads

description: L1000™ Expression Profiling is a high-throughput whole-genome gene-expression profiling assay based on the direct measurement of a reduced representation of the transcriptome and computational inference of the portion of the transcriptome not explicitly measured. The number of 'landmark' transcripts whose abundance is measured directly is nine hundred seventy eight (978). Eighty (80) additional invariant transcripts are also explicitly measured to enable scaling and normalization. Measurements of transcript abundance are made from crude cell lysates or purified total RNA in 384-well plate format with a combination of ligation-mediated amplification, optically-addressed microspheres, and flow cytometry. The inference model is trained on tens-of-thousands of public Affymetrix® GeneChip® gene-expression profiles. The resulting data are therefore denominated in the 22,268 (non-internal-control) features from the HG-U133A microarray. Landmark values are log-transformed, intra-sample scaled (against the invariant features), and intra-batch quantile normalized before the inference model is applied. A flag indicates whether a feature is measured ("LM") or inferred ("INF").

manufacture_protocol: amino-modified oligonucleotides are covalently attached to Luminex® MagPlex® Microspheres


title: [OElncRNAs520855F] Affymetrix Human Custom lncRNA Array

status: Public on Mar 15 2017

city: Guangzhou

last: Li

state: Guangdong

address: Panfu Road No1

department: Blood transfusion Department

institute: Guangzhou First People's Hospital

description: Library files (CLF/PGF) provided as supplementary files.

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2000 (Nothobranchius furzeri)

status: Public on Nov 18 2013

organism: Nothobranchius furzeri


title: Illumina HumanHT-12 V3.0 expression beadchip

status: Public on Jun 10 2008

city: San Diego

last: Illumina Inc.

address: 9885 Towne Centre Drive

institute: Illumina Inc.

description:
The HumanHT-12 V3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22).

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data.  These should be submitted as part of a GEOarchive.  Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html

relation: Alternative to: GPL19915 (ILMN_GENE version)

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Trypanosoma brucei brucei)

status: Public on Jul 11 2016

organism: Trypanosoma brucei brucei


title: Illumina HiSeq 2500 (Plasmodium falciparum)

status: Public on Oct 28 2015

organism: Plasmodium falciparum


title: Illumina HiSeq 2000 (Medicago truncatula)

status: Public on Jul 25 2013

organism: Medicago truncatula


title: Agilent-034462 Yeast_4x180K

status: Public on Mar 24 2014

city: Montreal

first: Francois

last: Robert

state: QC

address: 110 av des Pins Ouest

country: Canada

institute: IRCM

organism: Saccharomyces cerevisiae

description:
Arrays of this design have barcodes that begin with 16034462 or 2534462.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-074622 Mouse LncRNA v6 4X180K [Probe Name Version]

status: Public on Oct 16 2015

city: shanghai

first: qian

last: jin

address: libing road

institute: MSP

organism: Mus musculus


title: [HT_MG-430_PM] Affymetrix HT MG-430 PM Array Plate

status: Public on Nov 08 2010

description: Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

relation: Alternative to: GPL14178 (Alternative CDF)

relation: Alternative to: GPL17226 (Alternative CDF)

relation: Alternative to: GPL18098 (Alternative CDF [htmg430pmmmentrezgaltrabio131580])

relation: Alternative to: GPL21382 (HTMG430PM_Mm_ENTREZG_19.0.0)

relation: Alternative to: GPL21720 (alternative CDF)

relation: Alternative to: GPL24664 (alternative CDF[htmg430pmmmentrezgaltrabio142010.cdf])

relation: Alternative to: GPL25426 (Alternative CDF HTMG430PM_Mm_ENTREZG_22.0.0)


title: HiSeq X Ten (Caenorhabditis elegans)

status: Public on Jun 04 2018

organism: Caenorhabditis elegans


title: Illumina NextSeq 500 (Mycobacterium tuberculosis)

status: Public on Nov 16 2016

organism: Mycobacterium tuberculosis


title: Illumina HiSeq 4000 (Drosophila melanogaster)

status: Public on Jan 07 2016

organism: Drosophila melanogaster