title: NanoString nCounter Human miRNA Expression Assay v2 for OSKM induced TIG-1 fibroblasts

status: Public on Sep 30 2018

city: Kyoto

first: Satoshi

last: Gojo

address: 465 Kajii-cho, Kamigyo-ku

country: Japan

institute: Kyoto Prefectural University of Medicine

organism: Homo sapiens

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Customized nCounter human PanCancer Pathways panel

status: Public on Jun 03 2019

city: Scottsdale

first: Alanna

last: Maguire

state: Arizona

address: 13400 East Shea Blvd

department: Research

country: USA

institute: Mayo Clinic

technology: other

manufacture_protocol: NanoString nCounter Technology


title: Illumina MiSeq (Anopheles coluzzii)

status: Public on Sep 29 2018

last: GEO

organism: Anopheles coluzzii

technology: high-throughput sequencing

distribution: virtual


title: [HuGene-1_1-st] Affymetrix Human Gene 1.1 ST array [HuGene11stv1_Hs_ENTREZG version 15.1.0]

city: Wageningen

first: Peter

last: van Baarlen

address: De Elst 1

department: Animal Sciences

country: Netherlands

institute: Wageningen University

description: This array (platform) is identical to GPL11532 but a custom, remapped CDF environment is used to extract data. This is Entrez Gene version 15.1.0 of the remapped CDF. The CDF for this platform can be found via the link http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/15.1.0/entrezg.asp and via http://nmg-r.bioinformatics.nl/Packages_for_BioC_2.10.html

manufacture_protocol: See the manufacturer's website (www.affymetrix.com).


title: Illumina HiSeq 2500 (Danio rerio; Homo sapiens)

status: Public on Sep 28 2018

organism:
Danio rerio
Homo sapiens


title: HiSeq X Ten (Aeromonas veronii)

organism: Aeromonas veronii


title: Custom Fluidigm array with genes related to Celiac Disease (part 4)

city: Leioa

first: Jose Ramon

last: Bilbao

state: Outside the US or Canada

address: Bº Sarriena

department: Genetics, Physical Anthropology and Animal Physiology

country: Spain

institute: University of the Basque Country (UPV/EHU)

technology: RT-PCR

description: RT-PCR assay

manufacture_protocol: Fluidigm 96.96 Fast Real-Time PCR Workflow Quick Reference (PN 100-2637)


title: Custom Fluidigm array with genes related to Celiac Disease (part 1)

description: RT-PCR assay

manufacture_protocol: Fluidigm 48.48 Fast Real-Time PCR Workflow Quick Reference (PN 100-2637)


title: Custom Fluidigm array with genes related to Celiac Disease (part 2)

description: RT-PCR assay


title: Custom Fluidigm array with genes related to Celiac Disease (part 3)

description: RT-PCR assay


title: Agilent-067335 Pyropia tenera Gene Expression 4 X 44K array

city: Gongju-si

first: Soo Hyun

last: Im

address: Gongjudaehak-ro

department: Department of Biology

country: South Korea

institute: Kongju National University

organism: Pyropia tenera

description:
Agilent E-array GE 4 X 44K
Oligochip containing 15,115 primers designed from P. tenera ESTs.

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 2000 (Butyrivibrio hungatei; Butyrivibrio proteoclasticus)

status: Public on Sep 26 2018

organism:
Butyrivibrio proteoclasticus
Butyrivibrio hungatei


title: Illumina HiSeq 4000 (Talpa occidentalis)

status: Public on Sep 27 2018

organism: Talpa occidentalis


title: Illumina HiSeq 2000 (Butyrivibrio proteoclasticus)

organism: Butyrivibrio proteoclasticus


title: Illumina HiSeq 2000 (Butyrivibrio hungatei)

organism: Butyrivibrio hungatei


title: Exiqon LNA modified oligonucleotide capture probes microRNA array

city: Rotterdam

first: Erik

last: Wiemer

address: Wytemaweg 80

department: Medical Oncology

institute: Erasmus University Medical Center

organism: Mus musculus

technology: spotted oligonucleotide

description:
In house generated microRNA arrays based on locked nucleic acid (LNA™) modified oligonucleotides spotted in duplicate on Nexterion E slides. The capture probeset is based on miRBase version 10, annotation version 13.
The capture probeset consists of 1344 probes of which 577 are capable of detecting murine miRNAs.

distribution: non-commercial

manufacturer: Center for Biomics, Erasmus MC, Rotterdam

manufacture_protocol: The LNA-based capture probeset was acquired from Exiqon and spotted on Nexterion E-slides using a Virtek Chipwriter Pro.


title: Illumina HiSeq 2500 (Talpa occidentalis)


title: DNAchip_Genopal_ORAL_ver.1

city: Yokohama

first: Naoyuki

last: Togawa

state: Kanagawa

institute: Mitsubishi Chemical Corporation

organism:
Bacteria
Treponema denticola
Campylobacter rectus
Aggregatibacter actinomycetemcomitans
Porphyromonas gingivalis
Capnocytophaga gingivalis
Streptococcus gordonii
Streptococcus mutans
Streptococcus intermedius
Tannerella forsythia
Prevotella intermedia
Fusobacterium nucleatum subsp. nucleatum


title: Illumina HiSeq 2500 (Vibrio tapetis)

organism: Vibrio tapetis


title: Illumina HiSeq 2500 (Serratia liquefaciens)

status: Public on Sep 24 2018

organism: Serratia liquefaciens


title: HiSeq X Ten (Penicillium oxalicum)

status: Public on Sep 25 2018

organism: Penicillium oxalicum


title: Illumina HiSeq 2500 (Danaus plexippus)

organism: Danaus plexippus


title: PacBio RS II (Oryzias latipes)

status: Public on Sep 19 2018

organism: Oryzias latipes


title: Illumina HiSeq 2500 (Clostridioides difficile 630)

organism: Clostridioides difficile 630


title: Illumina HiSeq 2500 (Gorilla)

status: Public on Sep 20 2018

organism: Gorilla


title: HiSeq X Ten (Ananas comosus)

organism: Ananas comosus


title: Illumina HiSeq 2000 (Gorilla)


title: Illumina HiSeq 4000 (Candida parapsilosis)

status: Public on Sep 18 2018

organism: Candida parapsilosis


title: NextSeq 550 (Fusarium verticillioides)

status: Public on Sep 17 2018

organism: Fusarium verticillioides


title: Illumina HiSeq 2000 (Xanthomonas campestris pv. campestris str. 8004)

status: Public on Sep 21 2018


title: Agilent-070154 Rat_miRNA_V21.0_Microarray 070153 [Feature ID]

city: Palo Alto

last: Agilent Technologies

state: CA

institute: Agilent Technologies

organism: Rattus norvegicus

description:
Rat only version 21.0

Arrays of this design have barcodes that begin with 16070154 or 2570154.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Exiqon miRCURY LNA microRNA array; 7th generation REV - hsa, mmu & rno; batch 208520-22; lot 35102-35102 (miRBase 18.0)

city: Shanghai

first: Xiao-yan

last: dong

state: Shanghai

address: NO 24, Alley 1400, West Beijing Road

department: Department of respiration

country: China

institute: Shanghai Children's Hospital

organism: Homo sapiens

description:
ProductDate=March 2012"
ProductNumber=208520,208521,208522"
LotNumberRange=35102-35102"
http://www.exiqon.com/SEEEMS/26.asp

GalFileCreationDate=2012-09-27 10:55
ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 19.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:94.16%

manufacture_protocol: See manufacturer's website: http://www.exiqon.com


title: Illumina NextSeq 500 (Neurospora discreta)

organism: Neurospora discreta


title: Illumina MiSeq (Aquifex aeolicus)

organism: Aquifex aeolicus


title: Illumina NextSeq 500 (Homo sapiens; Rattus norvegicus)

organism:
Homo sapiens
Rattus norvegicus


title: Agilent-084349 50005412

status: Public on Sep 16 2018

city: Tsukuba

first: ayako

last: watanabe

state: Ibaraki

address: 3-1-5 Kannondai

department: National Institute of Animal Health

institute: National Agriculture and Food Research Organization

organism: Campylobacter jejuni

description:
Arrays of this design have barcodes that begin with 16084349 or 2584349.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-069025 Cryptomeria japonica Cj_MSWR_IG_BCM (Feature ID)

city: Hitachi

first: Mine

last: Nose

address: 3809-1 Ishi, Juo

institute: Forest Tree Breeding Center

organism: Cryptomeria japonica

description:
Arrays of this design have barcodes that begin with 16069025 or 2569025.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: HiSeq X Ten (Camellia sinensis var. assamica)

status: Public on Sep 14 2018

organism: Camellia sinensis var. assamica


title: Illumina HiSeq 2000 (Salmonella bongori)

organism: Salmonella bongori


title: Illumina HiSeq 2000 (Hylocereus polyrhizus)

organism: Selenicereus monacanthus


title: Illumina NextSeq 500 (Sciaenops ocellatus)

status: Public on Sep 13 2018

organism: Sciaenops ocellatus


title: Sequel (Gallus gallus)

organism: Gallus gallus


title: [HG-U133A_2] Affymetrix Human Genome U133A Array (HGU133A2 Hs ENTREZG 21.0.0)

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: Brainarray: HGU133A_Hs_ENTREZG_19.0.0

manufacture_protocol: See manufacturer's web site (www.affymetrix.com)


title: Illumina HiSeq 2500 (Camellia sinensis)

status: Public on Sep 10 2018

organism: Camellia sinensis


title: Illumina NextSeq 500 (Homo sapiens; Shigella flexneri 2a str. 2457T)

status: Public on Sep 06 2018

organism:
Homo sapiens
Shigella flexneri 2a str. 2457T


title: Illumina HiSeq 2000 (Vaccinium myrtillus)

status: Public on Sep 05 2018

organism: Vaccinium myrtillus


title: Ion Torrent Proton (Lactococcus lactis)

status: Public on Sep 07 2018

organism: Lactococcus lactis


title: HiSeq X Ten (Diuraphis noxia)

organism: Diuraphis noxia


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [Probesets grouped with EventPointer Bioconductor Version]

city: Pleasanton

first: Juan

middle: Pablo

last: Romero

address: 6230 Stoneridge Mall Rd

department: Computational Biology

institute: 10x Genomics

description: Affymetrix HTA 2.0 Probesets grouped with EventPointer Bioconductor Version (R package available at bioconductor)

relation: Alternative to: GPL17586 (Alternative CDF [official])


title: Illumina MiniSeq (Schizosaccharomyces pombe)

organism: Schizosaccharomyces pombe


title: Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium str. D23580)


title: AB 5500xl Genetic Analyzer (Postia placenta)

organism: Rhodonia placenta


title: Agilent-085113 PtrichocarpaV2  G4125A [Probe name version]

status: Public on Sep 11 2018

city: Quebec

first: Julien

last: Prunier

state: QC

address: 1030 av. de la medecine

department: Forestry

country: Canada

institute: Université Laval

organism: Populus trichocarpa

description:
Arrays of this design have barcodes that begin with 16085113 or 2585113

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

genome build: https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Ptrichocarpa


title: Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74)


title: Illumina HiSeq 2500 (Phanerochaete chrysosporium)

organism: Phanerodontia chrysosporium


title: Agilent-084856 Diphtheria array 084314 [Feature number version]

city: Silver Spring

first: Michael

last: Schmitt

address: 10903 New Hampshire Ave

institute: US Food and Drug Administration

organism: Corynebacterium diphtheriae NCTC 13129

description:
Arrays of this design have barcodes that begin with 16084856 or 2584856.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/ .


title: HiSeq X Ten (Dorcoceras hygrometricum)

organism: Dorcoceras hygrometricum


title: Agilent-058269 S. scrofa 8x60K array, custom designed for Paul-Ehrlich-Institut [RefSeq accession number version]

status: Public on Sep 08 2018

city: Hennigsdorf

first: Martina

last: Schad

address: Neuendorfstrasse 16b

country: Germany

institute: OakLabs GmbH

organism: Sus scrofa

description:
Agilent-058269 8x60K_S.scrofa_exp-val_07-2013_OakLabs
experimentally validated by OakLabs - MyArray. Additional human genes + PERV-genes.
This study was performed at Paul-Ehrlich-Institut, supported by grant SFB TRR CRC 127 from the Deutsche Forschungsgemeinschaft, DFG, Bonn, Germany, to Ralf R. Tönjes.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 4000 (Dorcoceras hygrometricum)


title: HiSeq X Ten (Oryzias latipes)

organism: Oryzias latipes


title: Illumina HiSeq 4000 (Vitis vinifera)

organism: Vitis vinifera


title: Agilent-084856 Diphtheria array 084314 [Probe name version]


title: Illumina NextSeq 500 (aquifer metagenome)

organism: aquifer metagenome


title: NanoString nCounter human Gene Expression Custom CodeSet

city: Berkeley

first: Cliona

last: McHale

address: 384 Li Ka Shing Center

department: School of Public Health

institute: University of California Berkeley

organism: Homo sapiens

description: Digital detection and direct molecular barcoding of  target molecules through the use of a color coded probe pair


title: Illumina HiSeq 2000 (Mycolicibacterium smegmatis)

status: Public on Sep 01 2018

organism: Mycolicibacterium smegmatis


title: Illumina HiSeq 2500 (Medicago sativa)

organism: Medicago sativa


title: Illumina HiSeq 2000 (Ruditapes philippinarum)

organism: Ruditapes philippinarum


title: Illumina HiSeq 4000 (Pimephales promelas)

status: Public on Sep 12 2018

organism: Pimephales promelas


title: HiSeq X Ten (Anser cygnoides)

status: Public on Sep 04 2018

organism: Anser cygnoides


title: Illumina HiSeq 2500 (Escherichia coli O157:H7)

organism: Escherichia coli O157:H7


title: Illumina NextSeq 500 (Schistosoma mansoni)

status: Public on Nov 08 2017

organism: Schistosoma mansoni


title: Agilent-058269 S. scrofa 8x60K array, custom designed for Paul-Ehrlich-Institut [Feature Number version]

status: Public on Feb 21 2018

description:
Agilent-058269 8x60K_S.scrofa_exp-val_07-2013_OakLabs
experimentally validated by OakLabs - MyArray. Additional human genes + PERV-genes.
Arrays of this design have barcodes that begin with 16058269 or 2558269.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
This study was performed at Paul-Ehrlich-Institut, supported by grant SFB TRR CRC 127 from the Deutsche Forschungsgemeinschaft, DFG, Bonn, Germany, to Ralf R. Tönjes.


title: Agilent-069025 Cryptomeria japonica array Cj_MSWR_IG_BCM (Probe name version)

status: Public on Aug 21 2017

organism: Cryptomeria japonica

description:
Agilent-069025 Cj_MSWR_IG_BCM

Arrays of this design have barcodes that begin with 16069025 or 2569025.


title: [RUSGene-1_1-st] Affymetrix Rice (US) Gene 1.0 ST Array [transcript (gene) version]

status: Public on Aug 03 2016

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Oryza sativa

description:
#%create_date=Thu Jun  2 01:42:24 2016 PDT
#%chip_type=RUSGene-1_1-st-v1
#%lib_set_name=RUSGene-1_1-st
#%lib_set_version=v1
#%genome-version=rgap7
#%genome-version-ucsc=rgap7
#%genome-lifted-method=None
#%genome-lifted_from-version-ucsc=rgap7
#%netaffx-annotation-date=2016-03-15
#%netaffx-annotation-netaffx-build=36
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=

manufacture_protocol: See manufacturer's web site


title: Agilent-070154 Rat_miRNA_V21.0_Microarray 070153 [Probe name version]

status: Public on Nov 22 2016

organism: Rattus norvegicus

description:
Rat only version 21.0

Arrays of this design have barcodes that begin with 16070154 or 2570154.


title: Illumina NextSeq 500 (Drosophila melanogaster; Mus musculus)

last: GEO

organism:
Drosophila melanogaster
Mus musculus


title: Illumina HiSeq 2500 (Sus scrofa)

status: Public on Sep 09 2014


title: Illumina HiSeq 2500 (Mycobacterium tuberculosis)

status: Public on Nov 01 2013

organism: Mycobacterium tuberculosis


title: Illumina NovaSeq 6000 (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina HiSeq 2000 (Sus scrofa)

status: Public on Jan 11 2011

organism: Sus scrofa


title: Illumina HiSeq 2500 (Candida albicans)

status: Public on Aug 04 2014

organism: Candida albicans


title: Illumina NextSeq 500 (Arabidopsis thaliana)

status: Public on Dec 23 2014

organism: Arabidopsis thaliana


title: Illumina HiSeq 1500 (Mus musculus)

status: Public on Mar 27 2014

organism: Mus musculus