title: Illumina MiSeq (Macaca mulatta polyomavirus 1)

status: Public on Oct 31 2018

last: GEO

country: USA

organism: Betapolyomavirus macacae

technology: high-throughput sequencing

distribution: virtual


title: Affymetrix RML Custom Pathogenic chip 1

status: Public on May 27 2005

city: Hamilton

first: Dan

last: Sturdevant

state: MT

address: 903 S 4th street

department: NIAID

institute: NIH

organism:
Borreliella burgdorferi
Yersinia pestis
Coxiella burnetii
Chlamydia trachomatis
Staphylococcus aureus
Streptococcus pyogenes

technology: in situ oligonucleotide

description: Measurements of S.aureus gene expression during S.aureus-PMN interaction

distribution: non-commercial

first: Jovanka

middle: M

last: Voyich

first: Kevin

middle: R

last: Braughton

first: Daniel

middle: E

first: Adeline

last: Whitney

first: Battouli

last: Said-Salim

first: Stephen

middle: F

last: Porcella

last: Long

first: David

middle: W

last: Dorward

first: Donald

middle: J

last: Gardner

first: Barry

middle: N

last: Kreiswirth

first: James

last: Musser

first: Frank

last: DeLeo


title: Agilent-069100 HBOC-2 G4126A 8×60k array

city: Hannover

first: Doris

last: Steinemann

address: Carl-Neuberg-Straße 1

department: Human Genetics

country: Germany

institute: Medizinische Hochschule Hannover

organism: Homo sapiens

description:
hg19:GRCh37

Arrays of this design have barcodes that begin with 16069100 or 2569100

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: 454 GS FLX (Prunus avium)

status: Public on Oct 30 2018

organism: Prunus avium


title: Illumina HiSeq 2500 (Pseudomonas aeruginosa; Staphylococcus aureus)

organism:
Pseudomonas aeruginosa
Staphylococcus aureus


title: Illumina HiSeq 3000 (Rosa roxburghii)

organism: Rosa roxburghii


title: Illumina HiSeq 2500 (Homo sapiens; Human betaherpesvirus 6A)

organism:
Homo sapiens
Human betaherpesvirus 6A


title: Illumina HiSeq 2000 (Homo sapiens; Human betaherpesvirus 6A)


title: HiSeq X Ten (Medicago truncatula)

organism: Medicago truncatula


title: Illumina HiSeq 2000 (Meriones unguiculatus)

organism: Meriones unguiculatus


title: Illumina MiSeq (Gordonia phage Blueberry)

organism: Gordonia phage Blueberry


title: Illumina MiSeq (Gordonia phage CarolAnn)

organism: Gordonia phage CarolAnn


title: Illumina MiSeq (Gordonia phage Utz)

organism: Gordonia phage Utz


title: Illumina MiSeq (Gordonia phage Kita)

organism: Gordonia phage Kita


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [CDF: hta20_Hs_ENTREZG, Brainarray version 18.0.0]

status: Public on Oct 29 2018

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: This array is identical to GPL17586 but the data were analyzed with a custom CDF environment.

manufacture_protocol: See manufacturer's web site.


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG_v22]

description: This array is identical to GPL570 but the data were analyzed with a custom CDF environment.

manufacture_protocol: Refer to Affymetrix manufacture protocol for HG-U133 Plus 2.0 array


title: Illumina HiSeq 4000 (Amentotaxus argotaenia)

status: Public on Oct 26 2018

organism: Amentotaxus argotaenia


title: Illumina HiSeq 4000 (Pseudotaxus chienii)

organism: Pseudotaxus chienii


title: [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: Brainarray V 18, huex10st_Hs_ENTREZG_18.0.0]

description: This platform is identical to GPL5175 but a custom CDF environment was used to extract data [EntrezGene build from Brainarray Version 18.0, huex10st_Hs_ENTREZG_18.0.0].

relation: Alternative to: GPL5175 ((Alternative CDF [official]))

manufacture_protocol: see Affymetrix


title: Illumina NextSeq 500 (Agrobacterium tumefaciens)

organism: Agrobacterium tumefaciens


title: Illumina MiSeq (Corynebacterium glutamicum)

organism: Corynebacterium glutamicum


title: Illumina MiSeq (Nicrophorus vespilloides)

organism: Nicrophorus vespilloides


title: Illumina HiSeq 4000 (Chrysodeixis includens)

organism: Chrysodeixis includens


title: Onco_Agena

city: Cantanhede

first: Helena

last: Vazao

address: Biocant Park Nucleo4, 4A

department: HeartGenetics

country: Portugal

institute: HeartGenetics

organism: Homo sapiens

technology: RT-PCR

description:
HeartGenetics OncoAlvo® Panel
The MassARRAY technology comprehends several multiplexed PCR reactions, requiring only 40 ng of input DNA per sample, followed by iPLEX Pro single base extension reactions. The extension products are dispensed onto a SpectroCHIP Array and detected via MassARRAY mass spectrometry. After the sample run, an automated software report provides the calls and mutation frequency for each sample.

manufacture_protocol: See manufacturer's website (www.agenabio.com).


title: Illumina MiSeq (Mycobacterium phage Crossroads)

status: Public on Oct 25 2018

organism: Mycobacterium phage Crossroads


title: Illumina HiSeq 2500 (Mustela putorius furo)

organism: Mustela putorius furo


title: Illumina NextSeq 500 (Peltaster fructicola)

organism: Peltaster fructicola


title: Illumina MiSeq (Mycobacterium phage Sbash)

organism: Mycobacterium phage Sbash


title: Qiagen Mouse Neurological Development & Disease miRNA PCR assay [MIMM-107Z]

city: Barcelona

first: Christian

middle: Griñán

last: Ferré

state: Barcelona

address: Joan XIII, s/n

department: Pharmacology, Toxicology and Therapeutic Chemistry

country: Spain

institute: University of Barcelona

organism: Mus musculus

description:
miScript® miRNA PCR Array-Neurological Development and Disease miRNA PCR Array (Qiagen)
Microarray PCR (Qiagen) in an ABI PRISM 7900 HT

manufacture_protocol: See manufacturer's website


title: Illumina NextSeq 500 (Ciona robusta)

last: GEO

organism: Ciona robusta


title: Illumina HiSeq 2000 (Leucoraja erinacea)

status: Public on Oct 22 2018

organism: Leucoraja erinaceus


title: Illumina HiSeq 4000 (Homo sapiens; Human gammaherpesvirus 8)

status: Public on Oct 24 2018

organism:
Homo sapiens
Human gammaherpesvirus 8


title: MinION (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: Illumina HiSeq 2500 (unclassified viruses)

organism: unclassified viruses


title: HiSeq X Ten (Cyprinus carpio)

status: Public on Oct 23 2018

organism: Cyprinus carpio


title: Illumina HiSeq 4000 (Torreya grandis)

organism: Torreya grandis


title: MinION (synthetic construct)

organism: synthetic construct


title: Illumina HiSeq 2500 (Taxus mairei)

status: Public on Oct 19 2018

organism: Taxus mairei


title: Illumina HiSeq 4000 (Taxus x media)

organism: Taxus x media


title: Illumina HiSeq 2000 (Arundo donax)

organism: Arundo donax


title: Illumina HiSeq 2500 (Iris atropurpurea)

organism: Iris atropurpurea


title: Illumina NovaSeq 6000 (Haemophilus influenzae)

organism: Haemophilus influenzae


title: BC016 nosZ

city: Princeton

first: Bess

middle: B

last: Ward

state: NJ

address: Washington Road

department: Geosciences

institute: Princeton University

organism:
soil metagenome
seawater metagenome

technology: spotted oligonucleotide

manufacture_protocol:
1.The probe oligonucleotides are printed onto Corning Ultragaps or Erie Scientific Epoxy Silane slides using a DeRisi style arrayer (DiRisi et al., 1997) and pins from Parallel Synthesis.
2.The 70-mer oligo probes (Operon Technologies) were adjusted to a concentration of 0.05 mg ml-1 in 50%  DMSO and were spotted on CMT-GAPS amino silane-coated  glass slides (Corning, Corning, NY).
3. After printing, the slides were stored in the dark at room temperature under slight vacuum in a dessicator. They were UV irradiated before hybridization,


title: Agilent-029505 Mus musculus mm9

status: Public on Oct 18 2018

city: Edinburgh

first: nick

last: gilbert

address: Crewe Rd

department: MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine

country: United Kingdom

institute: University of Edinburgh

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 3000 (Macaca mulatta; Plasmodium cynomolgi ceylonensis)

organism:
Macaca mulatta
Plasmodium cynomolgi ceylonensis


title: Illumina HiSeq 2500 (Stenotrophomonas maltophilia)

status: Public on Oct 16 2018

organism: Stenotrophomonas maltophilia


title: Illumina HiSeq 1000 (Macaca mulatta; Plasmodium coatneyi)

organism:
Macaca mulatta
Plasmodium coatneyi


title: Illumina NextSeq 500 (Hydra vulgaris)

organism: Hydra vulgaris


title: Illumina HiSeq 4000 (Hydra vulgaris)


title: Agilent-032034 VPC Human 180K v3 (Ensembl 77 / Gencode 21 / GRCh38 annotation)

city: Brisbane

first: Colleen

last: Nelson

state: Queensland

address: 199 Ipswich Road

department: Institute of Health and Biomedical Innovation; Vancouver Prostate Centre

country: Australia

institute: Queensland University of Technology; University of British Columbia

organism: Homo sapiens

manufacture_protocol: SurePrint G3 4x180K format, feature and microarray designed using eArray


title: Illumina HiSeq 2500 (Myotis daubentonii)

organism: Myotis daubentonii


title: 430 miRNA panel_AppliedBiosystems

status: Public on Oct 20 2018

city: Gent

first: Katleen

last: De Preter

address: Corneel Heymanslaan 10

department: Center for Medical Genetics

country: Belgium

institute: Ghent University

description: PCR assay


title: Illumina HiSeq 4000 (Taxus cuspidata)

organism: Taxus cuspidata


title: Qiagen miRNA MiScript SYBER Green human breast cancer miRNA PCR assay panel

status: Public on Oct 13 2018

city: Kamogawa City, Chiba

first: Yuko

last: Tsunoda

address: 929 Higashi-cho

country: Japan

institute: Kameda Medical Center

description:
RT2 qPCR-Grade miRNA Isolation Kit (SABiosciences)
miRNA MiScript SYBR Green human breast cancer miRNA PCR kit (Qiagen)


title: Illumina HiSeq 1500 (Felis catus)

status: Public on Oct 11 2018

organism: Felis catus


title: HiSeq X Ten (Ganoderma lucidum)

status: Public on Oct 15 2018

organism: Ganoderma lucidum


title: Illumina HiSeq 2000 (Chrysodeixis includens)

status: Public on Oct 10 2018

organism: Chrysodeixis includens


title: Sequel (Arabidopsis thaliana)

organism: Arabidopsis thaliana


title: Illumina HiSeq 3000 (Chlorocebus sabaeus)

organism: Chlorocebus sabaeus


title: Illumina MiSeq (Helicobacter pylori)

status: Public on Oct 17 2018

organism: Helicobacter pylori


title: Illumina HiSeq 4000 (Morella rubra)

status: Public on Oct 08 2018

organism: Morella rubra


title: [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: Brainarray V 19, huex10st_Hs_ENTREZG_19.0.0]

description: This platform is identical to GPL5175 but a custom CDF environment was used to extract data [EntrezGene build from Brainarray Version 19.0, huex10st_Hs_ENTREZG_19.0.0].

relation: Alternative to: GPL5175 (Alternative CDF [official])


title: Illumina HiSeq 2000 (Macaca mulatta; Plasmodium cynomolgi strain B)

organism:
Macaca mulatta
Plasmodium cynomolgi strain B


title: Sequel (Influenza A virus (A/WSN/1933(H1N1)))

status: Public on Oct 04 2018

organism: Influenza A virus (A/WSN/1933(H1N1))


title: Illumina HiSeq 3000 (Macaca fascicularis)

organism: Macaca fascicularis


title: Illumina HiSeq 1500 (Canis lupus familiaris)

organism: Canis lupus familiaris


title: NimbleGen-Burkholderia multivorans ATCC 17616 385K 4-plex custom array [110225_RDKK301_Bmul_expr]

status: Public on Oct 09 2018

city: Fujisawa

first: Hideaki

last: Takano

state: KANAGAWA

address: 1866, Kameino

department: College of Bioresource Sciences

institute: Nihon University

organism: Burkholderia multivorans ATCC 17616

description: NimbleGen design name 110225_RDKK301_Bmul_expr.  A 1:2 expression design for 5,981 genes from Burkholderia multivorans ATCC17616 with six 60-mer probe pairs (PM/MM) per gene.  Each probe is replicated 2 times.  The design includes random GC and other control probes.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: HiSeq X Ten (Ictalurus punctatus)

organism: Ictalurus punctatus


title: Illumina Hiseq 2500 (Strophostyles helvola)

organism: Strophostyles helvola


title: Agi-perou-lab-custom-MM-144K-arrays-BARCODE25503 [UNC microarray database probe name version]

city: Chapel Hill

first: Charles

middle: M.

last: Perou

state: NC

address: 12-044 Lineberger Comprehensive Cancer Center CB# 7295

department: Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center

institute: University of North Carolina at Chapel Hill

organism: Mus musculus

manufacture_protocol: agilent technology


title: Illumina HiSeq 2500 (Canis lupus familiaris; Homo sapiens; Influenza A virus (A/WSN/1933(H1N1)))

organism:
Homo sapiens
Canis lupus familiaris
Influenza A virus (A/WSN/1933(H1N1))


title: Illumina HiSeq 2500 (Populus euphratica)

organism: Populus euphratica


title: Illumina HiSeq 3000 (Macaca mulatta; Plasmodium knowlesi)

organism:
Plasmodium knowlesi
Macaca mulatta


title: Illumina HiSeq 2500 (Drosophila melanogaster x Drosophila mauritiana)

status: Public on Oct 03 2018


title: Illumina HiSeq 4000 (Nicotiana tabacum)

organism: Nicotiana tabacum


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [Brainarray CustomCDF hugene21st_Hs_ENSG v21]

organism: Homo sapiens


title: Illumina NovaSeq 6000 (Dunaliella salina)

organism: Dunaliella salina


title: PacBio RS II (Drosophila busckii)

status: Public on Oct 02 2018

organism: Drosophila busckii


title: Illumina HiSeq 1500 (Sus scrofa)

organism: Sus scrofa


title: Illumina HiSeq 3000 (Drosophila virilis)

organism: Drosophila virilis


title: Illumina HiSeq 3000 (Macaca mulatta; Plasmodium cynomolgi strain B)

organism:
Macaca mulatta
Plasmodium cynomolgi strain B


title: Illumina HiSeq 2500 (Drosophila mauritiana)

organism: Drosophila mauritiana


title: NanoString mouse cancer immune panel (NS_Mm_CancerImm_C3400) [Gene name version]

technology: other

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Agilent-061768 Campylobacter jejuni microarray (Probe name version)

city: Yangzhou

first: Fangzhe

last: Ren

state: Jiangsu

address: East Wenhui Road No.12

country: China

institute: Yangzhou university

organism: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819


title: Illumina HiSeq 3000 (Drosophila busckii)


title: Illumina HiSeq 2500 (Pseudomonas syringae pv. syringae B728a)

status: Public on Oct 05 2018

organism: Pseudomonas syringae pv. syringae B728a


title: NanoString nCounter miRNA Expression Panel

city: Houston

first: Yuanqing

last: Ye

state: TX

address: 1155 Pressler st

department: Epidemiology

institute: UT MD Anderson Cancer Center

manufacture_protocol:
https://www.nanostring.com/scientific-content/technology-overview/ncounter-technology
Probe hybridization and digital quantification


title: ORB MiRBase 19 Multispecies MicroRNA Microarray

status: Public on Jul 06 2017

city: Miami

first: Eléonore

last: Beurel

state: FL

address: 1011 NW 15th Street

department: Departments of Psychiatry and Biochemistry

institute: University of Miami

organism:
Macaca mulatta
Homo sapiens
Mus musculus
Rattus norvegicus

manufacture_protocol: Proprietary spotting of DNA oligonucleotides containing dimer or trimer repeat of reverse complement of target sequence.


title: Littorina saxatilis NimbleGen 090824_L_saxatilis_expr_HX12 (Probe ID)

city: Vigo

first: Humberto

last: Quesada

address: Campus As Lagoas-Marcosende

department: Departamento de Bioquímica, Genética e Inmunología,

institute: Universidad de Vigo

organism: Littorina saxatilis

description:
NimbleGen design name 090824_L_saxatilis_expr_HX12, NimbleGen OID231110. A 12X135K (12-plex high-density) expression array for 25,205 transcripts from Littorina saxatilis with five 60 nt probes per transcript.  The design also includes probes to four genomic BACs (577,000 nt in total), 8,022 nt mt DNA,  few heterologous mollusc transcripts, random GC and other control probes.
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.


title: UNAM HUMAN 10K v1.0 (condensed)

status: Public on Sep 06 2017

city: México

first: Karlen

last: Gazarian

state: Mexico

address: Circuito Exterior 3

department: Genomic Medicine

country: Mexico

institute: Instituto de Investigaciones Biomédicas

manufacturer: Unidad de Microarreglos de DNA - UNAM - Mexico

manufacture_protocol: 50 mer oligos purchased from MWG


title: Agilent-040398 kuruma shrimp high-density oligonucleotide gene chip array (8x15k)

status: Public on Feb 19 2015

city: Tokyo

first: Hidehiro

last: Kondo

address: 4-5-7 Konan, Minato

organism: Penaeus japonicus

description: kuruma shrimp high-density oligonucleotide gene chip array developed by the Laboratory of Genome Science, Tokyo University of Marine Science and Technology


title: Agilent-084388 Mouse lncRNA Microrray V3 [Probe name version]

status: Public on Oct 12 2018

city: Chengdu

first: Hongxin

last: Deng

state: Sichuan

address: Ke-yuan Road 4, No. 1, Gao-peng Street

department: West China Hospital

institute: Sichuan University and Collaborative Innovation Center for Biotherapy

organism: Mus musculus

manufacture_protocol: see manufacturer's website at http://www.agilent.com


title: Ion Torrent S5 (Mus musculus)

status: Public on Oct 25 2018


title: Agilent-032034 VPC Human 180K v3 (Probe Name version)

status: Public on Feb 08 2013

description: annotation from RefSeq and EntrezGene Database (downloaded: April, 2012)

first: Melanie

middle: L

last: Lehman

middle: C


title: AB 5500xl Genetic Analyzer (Saccharomyces cerevisiae)

status: Public on Apr 29 2014

organism: Saccharomyces cerevisiae


title: Agilent-031181 Unrestricted_Human_miRNA_V16.0_Microarray 030840 (Feature Number version)

status: Public on Dec 15 2011

city: Palo Alto

last: Agilent Technologies

state: CA

institute: Agilent Technologies

description:
Human and human viral miRNAs

Arrays of this design have barcodes that begin with 16031181 or 2531181.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL16770 (miRNA ID version)


title: Zebrafish custom Agilent temperature_cadmium microarray

status: Public on Aug 27 2010

city: Wilrijk

first: Lucia

last: Vergauwen

address: Universiteitsplein 1

department: Veterinary Sciences

institute: University of Antwerp

organism: Danio rerio

description: A custom cadmium and temperature specific 15k microarray was designed. For this purpose 16 Agilent zebrafish 44k full genome microarray (version V2, AMADID 019161, containing 43,604 unique probes) hybridizations were performed on a subsample of the test samples from a temperature experiment and a cadmium exposure (performed with the intention of comparing temperature and cadmium responses in zebrafish). Probes that were differentially expressed under these conditions were included in the custom design and supplemented with GO-annotated probes from the full genome microarray probe set.

first: Dries

last: Knapen

first: Ronny

last: Blust

manufacture_protocol: 60-mer oligonucleotides printed by Agilent


title: Littorina saxatilis NimbleGen 090824_L_saxatilis_expr_HX12

status: Public on Jul 29 2014

city: Strömstad

first: Marina

last: Panova

address: Tjärnö

department: Biol and Env Sciences

country: Sweden

institute: Gothenburg University


title: Agilent-042459 Custom Pseudomonas syringae pv. tomato str. DC3000 GE MicroArray

status: Public on Oct 01 2018

city: Pozuelo de Alarcon

first: Emilia

last: López Solanilla

state: Madrid

address: Parque Científico y Tecnológico UPM, Campus de Montegancedo, Ctra. M-40, km 38

institute: CBGP-Universidad Politécnica de Madrid (UPM)

description:
Arrays of this design have barcodes that begin with 16042459 or 2542459.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/ .


title: Ion Torrent S5 (Escherichia coli)

status: Public on Jun 04 2018

last: GEO

organism: Escherichia coli


title: Affymetrix Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A20071112,EP]

status: Public on Feb 09 2010

city: Parkville

first: Gordon

middle: K

last: Smyth

state: Vic

address: 1G Royal Pde

department: Bioinformatics

institute: Walter and Eliza Hall Institute of Medical Research

description:
Probe set data extracted from custom CDF [HuEx-1_0-st-v2,coreR3,A20071112,EP].

#%chip_type=HuEx-1_0-st-v2
#%lib_set_name=HuEx-1_0-st
#%lib_set_version=v2
#%genome-species=Homo sapiens
#%genome-version-ucsc=hg18
#%genome-version-ncbi=36
#%genome-version-create_date=2006-03
#%netaffx-annotation-date=2008-07-21
#%netaffx-annotation-netaffx-build=26

manufacture_protocol: See manufacturer's website.


title: Illumina HiSeq 4000 (Solanum lycopersicum)

status: Public on Oct 10 2018

organism: Solanum lycopersicum


title: Illumina MiSeq (Staphylococcus aureus)

status: Public on Mar 27 2014

organism: Staphylococcus aureus


title: NanoString Mouse nCounter Myeloid Innate Immunity Panel NS_Mm_Myeloid_V2.0

status: Public on Jul 02 2018

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: See manufacturer's website (http://www.nanostring.com).


title: BGISEQ-500 (Rattus norvegicus)

status: Public on Mar 28 2018

organism: Rattus norvegicus


title: HiSeq X Ten (Capra hircus)

status: Public on Oct 03 2018

organism: Capra hircus


title: Agilent-031173 Mtb-TRASH-350bp

city: Ithaca

first: Evgeniya

last: Nazarova

state: NEW YORK

address: C5 103 VMC Cornell University

department: Microbiology & Immunology

institute: Cornell University

organism: Mycobacterium tuberculosis

description:
Array for TRASH screen analysis, 60mer, 350bp apart

Arrays of this design have barcodes that begin with 16031173 or 2531173.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2500 (Anopheles arabiensis)

status: Public on Oct 09 2018

organism: Anopheles arabiensis


title: [Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version]

status: Public on Feb 28 2017

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Homo sapiens

description:
Annotation was derived from the Affymetrix annotation file Clariom_D_Human.na36.hg38.transcript.csv:

#%create_date=Mon Jun 20 14:19:01 2016 PDT
#%chip_type=Clariom_D_Human
#%lib_set_name=Clariom_D_Human
#%lib_set_version=r1
#%genome-species=Homo sapiens
#%genome-version=hg38
#%genome-version-ucsc=hg38
#%genome-version-ncbi=GRCh38
#%genome-version-create_date=2013-12-00
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Homo sapiens
#%genome-lifted_from-version-ucsc=hg38
#%genome-lifted_from-version-ncbi=GRCh38
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36

relation: Alternative to: GPL25401 (Alternative CDF: ClariomDHuman_Hs_GENECODEG_22.0.0)

relation: Alternative to: GPL25683 (Alternative CDF: ClariomSHuman_Hs_ENTREZG, version 22)

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 4000 (Arabidopsis thaliana)

status: Public on Apr 28 2016

organism: Arabidopsis thaliana


title: Illumina HiSeq 2500 (Rattus norvegicus)

status: Public on May 14 2014


title: Illumina HiSeq 1500 (Homo sapiens)

status: Public on Mar 24 2014