title: Illumina NextSeq 500 (Murid betaherpesvirus 1)

status: Public on Nov 29 2018

last: GEO

country: USA

organism: Murid betaherpesvirus 1

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 2000 (Coprinopsis cinerea)

status: Public on Nov 30 2018

organism: Coprinopsis cinerea


title: Illumina HiSeq 4000 (Gossypium raimondii)

organism: Gossypium raimondii


title: Illumina HiSeq 2500 (Locusta migratoria)

organism: Locusta migratoria


title: [MoGene-2_1-st] Affymetrix Mouse Gene 2.1 ST Array [gene symbols]

status: Public on Sep 08 2019

city: Lille

first: Jérôme

last: Eeckhoute

address: Bâtiment J&K, Faculté de Médecine de Lille-Pôle Recherche, Boulevard du Professeur Leclerc

country: France

institute: CNRS

organism: Mus musculus

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: See manufacturer's web site.


title: Illumina HiSeq 2500 (Aspergillus fumigatus Af293)

organism: Aspergillus fumigatus Af293


title: Exiqon miRCURY LNA microRNA array; 7th generation; batch 208500-2, 208510; lot 35005 human & related vira (miRBase 18.0)

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Homo sapiens

technology: spotted oligonucleotide

description:
LotNumberRange=35105-35105
Organism(s)=Homo sapiens, Human Epstein-barr virus, Human Human herpesvirus 5, Human Human immunodeficiency virus 1, Human Human herpesvirus 1, Human Human herpesvirus 8, Simian Simian virus 40, Human JC polyomavirus, Human BK polyomavirus, Human Merkel cell polyomavirus, Human Herpes simplex virus 2, Human Herpes B virus, Human Herpesvirus saimiri strain A11, Human Human herpesvirus 6B"
GalFileCreationDate=2013-12-19 09:17
ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 20.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:75.23%

manufacture_protocol: See manufacturer's website: http://www.exiqon.com


title: Illumina HiSeq 2000 (Ophiocordyceps sinensis)

status: Public on Nov 28 2018

organism: Ophiocordyceps sinensis


title: [RaGene-2_0-st] Affymetrix Rat Gene 2.0 ST Array [ragene20st_Rn_ENTREZG ENTREZG_22]

status: Public on Jul 06 2020

city: Rennes

first: Frédéric

last: Chalmel

state: France

address: 9 avenue du Pr. Léon Bernard

department: Physiology and physiopathology of the urogenital tract

institute: Inserm U1085-Irset

organism: Rattus norvegicus

manufacture_protocol: See manufacturer's web site


title: Illumina HiSeq 4000 (Apostichopus japonicus)

organism: Apostichopus japonicus


title: Illumina HiSeq 4000 (Gossypium trilobum)

organism: Gossypium trilobum


title: Illumina HiSeq 4000 (Gossypium thurberi)

organism: Gossypium thurberi


title: [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array [CDF: Brainarray ENTREZG v10]

city: Cincinnati

first: Nancy

last: Ratner

state: OH

address: 3333 Burnet Ave.

institute: Cincinnati Children's Hospital Medical Center

manufacture_protocol: This is identical to GPL1261 but a custom cdf environmnet was used to extract data


title: Illumina HiSeq 2500 (Anopheles darlingi)

status: Public on Nov 26 2018

organism: Anopheles darlingi


title: BGISEQ-500 (Escherichia coli BW25113)

status: Public on Nov 27 2018

organism: Escherichia coli BW25113


title: Illumina HiSeq 2500 (Hyriopsis cumingii)

organism: Sinohyriopsis cumingii


title: Illumina HiSeq 4000 (Mus musculus domesticus x M. m. molossinus)


title: Peanut oligonucleotide microarray (36,741)

city: Qingdao

last: Chen

address: wannianquan road

country: China

institute: Shandong Peanut Research Institute

organism: Arachis hypogaea

description:
A 72 K format micorarray was designed for 36,741 unigenes assembled from publicly available and  inhouse ETSs. Each unigene has two probes.
100727_CB_A_hypogaea_expr.ndf
GEO_Arachis hypogaea_Platform_file.txt

distribution: non-commercial

manufacture_protocol: See manufacturer's website at http://www.nimblegen.com/.


title: HiSeq X Ten (Amolops torrentis)

organism: Amolops torrentis


title: HiSeq X Ten (Escherichia coli BW25113)


title: 3D-Gene 4animal Dog miRNA V20_1.0.0

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: Tebiro 6-10-1

department: New Projects Development Division

country: Japan

institute: Toray Industries,Inc.

organism: Canis lupus familiaris

distribution: commercial

manufacture_protocol: See manufacture's web site


title: Agilent-038040 New M. mulatta  _Rhesus_ Oligo Microarray v2 026806 [Probe name version]

city: Beijing

first: wang

last: liang

address: 7A North Yongchang Road BDA

institute: BioChainBJ

organism: Macaca mulatta

description:
M. mulatta (Rhesus) Oligo Microarray v2

Arrays of this design have barcodes that begin with 16038040 or 2538040.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Fluidgm 96.96 Dynamic Array™ IFC for Gene Expression

city: Chiba-city

first: Yusuke

last: ENDO

state: Chiba

address: 1-8-1 Inohana, Chuo-ku

department: Immunology

institute: Chiba University

technology: RT-PCR

description:
single cell qRT-PCR assay; Dynamic Array Integrated Fluidic Circuit (IFC)
catalog number: BMK-M-96.96


title: PacBio RS II (Lactobacillus paracasei)

status: Public on Nov 24 2018

organism: Lacticaseibacillus paracasei


title: HiSeq X Ten (Absidia caerulea)

status: Public on Nov 25 2018

organism: Absidia caerulea


title: Illumina HiSeq 2500 (Bos taurus; Trypanosoma congolense)

status: Public on Nov 23 2018

organism:
Trypanosoma congolense
Bos taurus


title: Illumina HiSeq 2500 (Trypanosoma congolense)

organism: Trypanosoma congolense


title: Applied Biosystems ViiA 7 System

status: Public on Nov 22 2018

city: New York

first: Julie

middle: Anne

last: Eggenberger

state: NY

address: 1 Gustave L. Levy Pl

department: Microbiology

institute: Icahn School of Medicine at Mount Sinai

organism: Homo sapiens

description: hPSC Scorecard analysis

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Brassica napus)

organism: Brassica napus


title: Agilent-023805 D. grimshawi 1

city: Hilo

first: M. Renee

last: Bellinger

state: Hawaii

address: 200 W. Kawili St.

department: Biology

institute: University of Hawaii

organism: Drosophila grimshawi

description:
Arrays of this design have barcodes that begin with 16023805 or 2523805.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NimbleGen Tomato KantLab 135K v1.0.

status: Public on Nov 20 2018

city: Gent

first: Nicky

last: Wybouw

address: Coupure Links 653

department: Department of Crop Protection

country: Belgium

institute: University of Ghent

organism: Solanum lycopersicum

manufacture_protocol: Standard


title: Illumina NextSeq 500 (Cryptococcus neoformans var. grubii H99; Macaca fascicularis)

organism:
Macaca fascicularis
Cryptococcus neoformans H99


title: RiboArray lncDETECT Mouse Array

city: Hangzhou

first: Rong

last: Dong

state: Zhejiang

address: No.886 Yuhangtang Road

department: College of Pharmaceutical Sciences

institute: Zhejiang University

organism: Mus musculus

description:
RiboBio
Genome build: mm9


title: RiboArray lncDETECT Mouse Array v2

description:
RiboBio
Genome build: mm9


title: Illumina NextSeq 500 (Cryptococcus neoformans var. grubii H99; Mus musculus)

organism:
Mus musculus
Cryptococcus neoformans H99


title: Illumina HiSeq 4000 (Fusarium acuminatum)

status: Public on Nov 15 2018

organism: Fusarium acuminatum


title: Illumina HiSeq 4000 (Rhizopus stolonifer)

organism: Rhizopus stolonifer


title: Illumina HiSeq 2500 (Lates calcarifer)

status: Public on Nov 19 2018

organism: Lates calcarifer


title: HiSeq X Ten (Chlamydomonas reinhardtii)

organism: Chlamydomonas reinhardtii


title: Agilent-084550_IRHS_Daucus_carota_v1

city: BEAUCOUZE

first: Sandra

last: Pelletier

address: 42, rue Georges Morel - BP 60057

institute: INRA

organism: Daucus carota

description:
Arrays of this design have barcodes that begin with 16084550 or 2584550.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-028809 Custom Western Fence Lizard Microarray

city: Vicksburg

first: Kurt

middle: A

last: Gust

state: MS

address: 3909 Halls Ferry Rd.

department: Environmental Laboratory

institute: US Army ERDC

organism: Sceloporus occidentalis

description: Agilent, Single Color, 8 x 60k, 60mer

manufacture_protocol: See manufacturer website (www.agilent.com).


title: Illumina HiSeq 2500 (Lactobacillus salivarius str. Ren)

status: Public on Nov 13 2018

organism: Ligilactobacillus salivarius str. Ren


title: Illumina HiSeq 2000 (Lycium ruthenicum)

organism: Lycium ruthenicum


title: Illumina MiSeq (Streptococcus sanguinis)

organism: Streptococcus sanguinis


title: Agilent-074288 Listeria monocytogenes LO28 array

status: Public on Nov 09 2018

city: Wageningen

first: Jeroen

middle: Steven

last: Koomen

address: Bornse Weilanden 9

country: Netherlands

institute: Wageningen University

organism: Listeria monocytogenes

manufacture_protocol: see website


title: Illumina HiSeq 2000 (Eulimnogammarus cyaneus)

status: Public on Nov 21 2018

organism: Eulimnogammarus cyaneus


title: Illumina HiSeq 2000 (Eulimnogammarus verrucosus)

organism: Eulimnogammarus verrucosus


title: Agilent-071114_Catma_IRHS_v1

status: Public on Nov 14 2018

organism: Arabidopsis thaliana

description:
Sondes catma-URGV + celles Etienne Bucher Epicenter

Arrays of this design have barcodes that begin with 16071114 or 2571114.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Chlamydomonas reinhardtii)


title: Illumina HiSeq 2000 (Argopecten irradians irradians x Argopecten purpuratus)


title: Illumina HiSeq 2000 (Puccinia emaculata)

organism: Puccinia emaculata


title: Illumina HiSeq 2500 (Klebsiella pneumoniae MGH 78578)

status: Public on Nov 16 2018

organism: Klebsiella pneumoniae MGH 78578


title: Illumina HiSeq 2500 (Maylandia zebra x Mchenga conophoros)

organism: Maylandia zebra x Mchenga conophoros


title: Illumina HiSeq 2500 (Petrotilapia nigra x Mchenga conophoros)

organism: Petrotilapia nigra x Mchenga conophoros


title: Illumina HiSeq 2500 (Labeotropheus fuelleborni x Mchenga conophoros)


title: Illumina HiSeq 2500 (Petrotilapia nigra x Aulonocara baenschi)


title: Illumina HiSeq 2500 (Labeotropheus fuelleborni)

organism: Labeotropheus fuelleborni


title: Illumina HiSeq 2500 (Maylandia zebra x Tramitichromis intermedius)


title: Illumina HiSeq 2500 (Maylandia zebra)

organism: Maylandia zebra


title: Illumina HumanHT-12 V4.0 expression beadchip [Entrez_Gene_ID-level]

city: Bangalore

first: madavan

last: vasudevan

state: Karnataka

address: Kasturi Nagar

country: India

institute: Theomics International Private Limited

organism: Homo sapiens

technology: oligonucleotide beads


title: [PrimeView] Affymetrix Human Gene Expression Array [Entrez Gene-level]

manufacture_protocol: See details from Affymetrix.


title: Illumina HiSeq 2000 (Phakopsora pachyrhizi)

last: GEO

organism: Phakopsora pachyrhizi


title: Illumina HiSeq 2000 (Lycium barbarum)

organism: Lycium barbarum


title: Illumina HiSeq 2000 (Aspergillus fumigatus A1163)

organism: Aspergillus fumigatus A1163


title: Illumina HiSeq 2000 (Aspergillus fumigatus A1163; Pseudomonas aeruginosa PAO1)

organism:
Pseudomonas aeruginosa PAO1
Aspergillus fumigatus A1163


title: NimbleGen Human CGH 385K Whole-Genome Tiling Array [080101_HG18_WG_CGH_v1_X1]

status: Public on Nov 17 2018

city: Taipei

first: yi-chiung

last: hsu

address: 128 Academia Road, Section 2

country: Taiwan

institute: academia sinica

description:
Genome build: hg18
NimbleGen description file: 080101_HG18_WG_CGH_v1_X1.pos
NimbleGen description file: 080101_HG18_WG_CGH_v1_X1.ndf
DESIGN_ID: 6917
DESIGN_NAME: 080101_HG18_WG_CGH_v1_X1


title: Illumina HiSeq 2000 (Microbiota)

status: Public on Nov 08 2018

organism: Microbiota


title: Agilent-085275_IRHS_Malus_domestica_v1

status: Public on Nov 10 2018

organism: Malus domestica

description:
Array design from gddh13 transcriptome with one probe per gene.

Arrays of this design have barcodes that begin with 16085275 or 2585275.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: HiSeq X Ten (Vitis amurensis)

organism: Vitis amurensis


title: Illumina HiSeq 2500 (Bifidobacterium longum subsp. infantis)

organism: Bifidobacterium longum subsp. infantis


title: TWMU array 3

status: Public on Nov 06 2018

city: Shinjuku-ku

first: kayoko

last: Kawaguchi

state: Tokyo

department: Pediatric Cardiology

institute: Tokyo Women'Medical University

manufacturer: Advanced Industrial Science and Technology (AIST)

manufacture_protocol: Human custom oligo chip 25k (Toray Industries Inc., Tokyo, Japan). For efficient hybridization, this microarray adopted columnar structure to stabilize spot morphology and to enable micro beads agitation.


title: Illumina HiSeq 2000 (Iris tectorum)

status: Public on Nov 02 2018

organism: Iris tectorum


title: Illumina HiSeq 2500 (Porphyromonas gingivalis ATCC 33277)

status: Public on Nov 07 2018

organism: Porphyromonas gingivalis ATCC 33277


title: Illumina HiSeq 3000 (Daphnia magna)

organism: Daphnia magna


title: Illumina NextSeq 500 (Anastrepha suspensa; Diachasmimorpha longicaudata entomopoxvirus)

organism:
Anastrepha suspensa
Diachasmimorpha longicaudata entomopoxvirus


title: Illumina HiSeq 1000 (Schmidtea mediterranea)

status: Public on Nov 05 2018

organism: Schmidtea mediterranea


title: Illumina Genome Analyzer IIx (Escherichia coli BW25113)

organism: Escherichia coli BW25113


title: BuG@S M.tuberculosis 15744 TBv3_0_0

city: London

first: larrouy-maumus

last: gerald

address: exhibition road

department: life sciences

country: United Kingdom

institute: Imperial college london

organism: Mycobacterium tuberculosis

manufacture_protocol: Agilent


title: ORB MiRBase 19 Multispecies MicroRNA Microarray

status: Public on Nov 01 2018

city: Hershey

first: Faoud

middle: T

last: Ishmael

state: PA

address: 500 University Dr.

department: Division of Pulmonary and Critical Care Medicine

institute: Penn State College of Medicine

organism:
Macaca mulatta
Homo sapiens
Mus musculus
Rattus norvegicus

manufacture_protocol: Proprietary spotting of DNA oligonucleotides containing dimer or trimer repeat of reverse complement of target sequence.


title: Illumina HiSeq 2500 (Megathyrsus maximus)

organism: Megathyrsus maximus


title: 4PLEX_PEA

city: Orsay

first: Stéphanie

last: Pateyron

address: Rue de Noetzlin _ Batiment 630

institute: IPS2_Institute of Plant Sciences Paris-Saclay

organism: Lathyrus oleraceus

description: Number of sequences/target:40454 probes x2 + 323 miRNA x2


title: HiSeq X Ten (Phyllostachys edulis)

organism: Phyllostachys edulis


title: Illumina Genome Analyzer IIx (Branchiostoma lanceolatum)

organism: Branchiostoma lanceolatum


title: Illumina NextSeq 500 (Diachasmimorpha longicaudata; Diachasmimorpha longicaudata entomopoxvirus)

organism:
Diachasmimorpha longicaudata
Diachasmimorpha longicaudata entomopoxvirus


title: Illumina HiSeq 2000 (Methylomonas sp. LW13)

organism: Methylomonas sp. LW13


title: Illumina NextSeq 500 (Influenza A virus)

organism: Influenza A virus


title: Illumina MiSeq (Acinetobacter baumannii)

status: Public on Nov 19 2014

organism: Acinetobacter baumannii


title: [MoGene-2_1-st] Affymetrix Mouse Gene 2.1 ST Array [transcript-level na35ens81]

status: Public on Sep 09 2016

city: Chapel Hill

first: Claire

middle: M.

last: Doerschuk

state: NC

address: Marsico Hall 7205 CB#7248

department: Marsico Lung Institute

institute: University of North Carolina at Chapel Hill

organism: Mus musculus

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
netAffx build = 35
Ensembl reference = 81
genome version = hg38

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2500 (Dinoroseobacter shibae)

organism: Dinoroseobacter shibae


title: Illumina MiSeq (Megathyrsus maximus)


title: HiSeq X Ten (Zea mays)

status: Public on Nov 23 2018

organism: Zea mays


title: Illumina HiSeq 4000 (Panax ginseng)

organism: Panax ginseng


title: NanoString nCounter® Mouse Neuropathology Panels [XT-CSO-MNROP1-12]

city: Gwangju

first: Wooje

last: Lee

address: 309, Pilmun-daero, Dong-gu

department: Cellular and Molecular Medicine

country: South Korea

institute: Chosun University

technology: other


title: Illumina HiSeq 4000 (Canis lupus familiaris)

status: Public on Nov 03 2017

organism: Canis lupus familiaris


title: [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array

status: Public on Apr 30 2008

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

organism: Homo sapiens

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28 (ucsc=hg18; ncbi=NCBI36)
August 01, 2012: annotation table updated with netaffx build 32 (ucsc=hg19; ncbi=GRCh37)

manufacture_protocol:
see manufacturer's web site

The new Affymetrix® Genome-Wide Human SNP Array 6.0 features 1.8 million genetic markers, including more than 906,600 single nucleotide polymorphisms (SNPs) and more than 946,000 probes for the detection of copy number variation.


title: Illumina NovaSeq 6000 (Danio rerio)

status: Public on May 14 2018

organism: Danio rerio


title: Illumina NovaSeq 6000 (Canis lupus familiaris)


title: Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Feature Number version)

status: Public on May 17 2011

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

description:
SurePrint G3 Human GE 8x60K Microarray

Arrays of this design have barcodes that begin with 16028004 or 2528004.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL14550

relation: Alternative to: GPL24914 (GeneName version)

manufacture_protocol: Agilent 60-mer SurePrint technology. See manufacturer's web site at http://www.agilent.com/


title: Illumina NovaSeq 6000 (Homo sapiens)

status: Public on Mar 02 2018