title: NanoString nCounter gene expression platform

status: Public on Feb 10 2019

city: Philadelphia

first: E

middle: JOHN

last: WHERRY

state: PA

address: 421 Curie Blvd,354 BRB II/III

department: Systems Pharmacology       and Translational Therapeutics,Institute for Immunology

country: USA

institute: University of Pennsylvania

organism: Homo sapiens

technology: other

description: Color coded molecular barcodes that hybridize directly to different target molecules

distribution: custom-commercial


title: Agilent-035108 DMS-JXY [Probe name version]

status: Public on Dec 31 2018

city: Harbin

first: Xueyuan

last: Jia

address: 157 Baojian Road, Nangang District

country: China

institute: Harbin Medical University

technology: in situ oligonucleotide

description:
1598/2139/251/508

Arrays of this design have barcodes that begin with 16035108 or 2535108.

The 4×180K format targeting amplified regions was customized microarray that we created by using the Agilent eArray online system (https://earray.chem.agilent.com/?) for interrogating the genome of Double minutes (DMs) with high-resolution and accuracy.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent Custom M. smegmatis Gene Expression 8x15k Array (AMADID: 020791) by Genotypic Technology Private Limited

status: Public on Dec 30 2018

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Mycolicibacterium smegmatis


title: Agilent  Human Gene Expression  8x60k Array AMADID: 072363 (GeneName version)

distribution: commercial


title: IRHS_Arabidopsis_v1

city: Beaucouzé

first: Jean-Marc

last: Celton

address: 42 rue Georges Morel

country: France

institute: INRA-IRHS

organism: Arabidopsis thaliana

description: A dataset of 76,851  quality-filtered predicted unigenes were submitted for probe design and production of the high-density microarray. Two oligoprobes were selected for each sequence, one on the sense strand and one on the anti-sense strand, based on highest hybridization specicifity. The chip contains a total of 153,702 probes for sense and antisense predicted coding genes, microRNA genes and transposable elements.

manufacture_protocol: SurePrint


title: HiSeq X Ten (Nannochloropsis sp.)

last: GEO

organism: Nannochloropsis sp.

technology: high-throughput sequencing

distribution: virtual


title: Nanostring nCounter human gene expression custom codeset

status: Public on Jan 30 2019

city: Paris

first: Pierre-Antoine

last: Defossez

address: 35 rue Hélène Brion

department: UMR7216 "Epigenetics and Cell Fate"

institute: CNRS-Université Paris Diderot - Sorbonne Paris Cité

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Illumina HiSeq 2500 (Daphnia pulex)

status: Public on Dec 27 2018

organism: Daphnia pulex


title: Ion Torrent Proton (Ursus americanus)

status: Public on Dec 26 2018

organism: Ursus americanus


title: Agilent-038169 human miRNA

city: Guangzhou

first: Jing

last: Wen

address: 651 Dongfeng East Road

institute: Sun Yat-sen University Cancer Center


title: Illumina HiSeq 4000 (Heligmosomoides polygyrus bakeri; Mus musculus)

organism:
Mus musculus
Heligmosomoides polygyrus bakeri


title: Illumina MiSeq (Coxsackievirus B3 (strain Nancy))

status: Public on Dec 28 2018

organism: Coxsackievirus B3 (strain Nancy)


title: [Axiom_CjSNPms] Affymetrix Axiom Japanese cedar EST Custom Genotyping Array Axiom_Cjest_73K_v1

city: Niigata

first: Yoichi

last: Hasegawa

address: 8050, Ikarashi 2-Nocho, Nishi-ku

department: Graduate School of Science and Technology

country: Japan

institute: Niigata University

organism: Cryptomeria japonica

manufacture_protocol: see manufactuer's web site


title: Citrobacter rodentium DBS100 genome (Lenz et al., 2015)

city: St-Anne-de-Bellevue

first: Sebastien

last: Faucher

state: QC

address: 21,111 Lakeshore

department: Natural Resource Sciences

country: Canada

institute: McGill University

organism: Citrobacter rodentium

manufacture_protocol: Proprietary Light Directed Oligonucleotide Synthesis, 50-mer, on glass slide.


title: Illumina HiSeq 2000 (Mycobacterium marinum M)

status: Public on Dec 24 2018

organism: Mycobacterium marinum M


title: HiSeq X Ten (Schistosoma japonicum)

status: Public on Dec 25 2018

organism: Schistosoma japonicum


title: Illumina HiSeq 2000 (Mycobacterium marinum E11)

organism: Mycobacterium marinum E11


title: Agilent-085011 goat array ARS1

city: Utrecht

first: Mariona

last: Baliu-Piqué

state: Utrecht

address: Lundlaan 6

department: Laboratory for Translational Immunology

country: Netherlands

institute: University Medical Center Utrecht

organism: Capra hircus


title: [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [HuGene-2_1-st_byTranscript-fsetid_pd.hugene.2.1.st  version]

city: Porto

first: Rune

last: Matthiesen

address: Rua Dr. Roberto Frias s/n

country: Portugal

institute: IPATIMUP


title: Proteomic Comparison Of ES8 xenografts treated with OMTX003, OMTX703 or control vehicle

city: Houston

first: Joseph

middle: A.

last: Ludwig

state: Texas

department: Sarcoma Medical Oncology

institute: UT-MD-Anderson Cancer Center

technology: spotted peptide or protein


title: MRA-1001LCB miRHuman 20

status: Public on Dec 23 2018

city: Zhengzhou

first: Chenrong

last: Wang

state: Henan

address: 95 Wenhua Road

department: College of Animal Science and Veterinary Medicine

institute: Henan Agricultural University

manufacture_protocol: see Gao, X., Gulari, E., and Zhou, X. (2004) In situ synthesis of oligonucleotide microarrays Biopolymers 73, 579-596; (b) Zhu, Q., Hong, A., Sheng, N., Zhang, X., Jun, K.-Y., Srivannavit, O., Gulari, E., Gao, X., and Zhou, X. (2007) Microfluidic biochip for nucleic acid and protein analysis. in Methods Mol. Biol. Ed. Rampal, J. B. 382:287-312.


title: Illumina HiSeq 3000 (Staphylococcus aureus subsp. aureus str. Newman)

status: Public on Dec 21 2018


title: Illumina HiSeq 2500 (Capsicum chinense)

organism: Capsicum chinense


title: Illumina HiSeq 4000 (Histoplasma capsulatum G217B)

organism: Histoplasma ohiense


title: Illumina MiSeq (Acropora palmata)

organism: Acropora palmata


title: Illumina HiSeq 2500 (Acropora palmata)


title: Health Canada/Genomics Lab TGx-DDI human qPCR array

city: Ottawa

first: Eunnara

last: Cho

state: Ontario

address: 251 Sir Frederick Banting Driveway

institute: Health Canada

organism: Homo sapiens

technology: RT-PCR

description: PCR assay

first: Julie

middle: K

last: Buick

first: Andrew

last: Williams

first: Renxiang

last: Chen

first: Heng-Hong

last: Li

first: Christopher

last: Corton

first: Albert

middle: J

last: Fornace Jr.

first: Jiri

last: Aubrecht

first: Carole

middle: L

last: Yauk

manufacture_protocol: see manufacturer's website


title: GridION (synthetic construct)

last: GEO

organism: synthetic construct


title: Illumina MiSeq (Streptococcus anginosus)

status: Public on Dec 20 2018

organism: Streptococcus anginosus


title: Illumina HiSeq 3000 (Porphyromonas gingivalis W83)

organism: Porphyromonas gingivalis W83


title: Illumina HiSeq 2500 (Venturia canescens)

status: Public on Dec 19 2018

organism: Venturia canescens


title: Illumina NextSeq 500 (Toxoplasma gondii)

organism: Toxoplasma gondii


title: Illumina HiSeq 2000 (Haemulon flavolineatum)

organism: Haemulon flavolineatum


title: Agilent-074348 Human (4*180K) LncRNA array (V6.0) [Feature Number Version]

first: Wang

last: Yi

address: Room1426, Yixue Keji Lou,74 Zhongshan 2nd Road

department: Department of Immunology

institute: Zhongshan School of Medicine, Sun Yat-sen University


title: Illumina HiSeq 4000 (Candida albicans; Mus musculus)

organism:
Candida albicans
Mus musculus


title: Illumina HiSeq 2000 (Haemulon macrostomum)

organism: Haemulon macrostomum


title: Exiqon miRCURY LNA microRNA Array, 7th generation [miRBase v18]

city: Brussels

first: Claude

last: Gérard

address: Avenue Hippocrate 75

department: de Duve Institute

country: Belgium

institute: Université catholique de Louvain

organism: Mus musculus

technology: spotted oligonucleotide

description:
Product=miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno
Supplier=Exiqon A/S
ProductDate=March 2012
ProductNumber=208500,208501,208502,208510
LotNumberRange=35003-35003
Organism(s)=Mus musculus, Mouse cytomegalovirus, Mouse gammaherpesvirus
GalFileCreationDate=2012-04-20 10:55
ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 18.0
ArrayContents_CurrentNameColumnCoverage=Mus musculus and related vira:99.92%


title: Illumina HiSeq 1500 (Nematostella vectensis)

status: Public on Dec 18 2018

organism: Nematostella vectensis


title: Illumina HiSeq 2000 (Haemulon carbonarium)

organism: Haemulon carbonarium


title: Illumina HiSeq 1500 (Mnemiopsis leidyi)

organism: Mnemiopsis leidyi


title: Illumina HiSeq 1500 (Sycon ciliatum)

organism: Sycon ciliatum


title: Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Gene Name version)

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL10332.


title: BGISEQ-500 (Bos taurus)

organism: Bos taurus


title: GeoChip Functional Gene Microarray (GeoChip 4.2)

city: Beijing

first: Bing

last: Zhang

state: Beijing

address: Rm 437, School of Environment, Tsinghua University

department: School of Environment

institute: Tsinghua University

organism:
Bacteria
Archaea
Eukaryota
Viruses


title: Illumina Genome Analyzer (Danio rerio; Streptococcus pneumoniae)

status: Public on Dec 17 2018

organism:
Streptococcus pneumoniae
Danio rerio


title: Illumina MiSeq (Lactobacillus plantarum)

organism: Lactiplantibacillus plantarum


title: Illumina HiSeq 1500 (Amphimedon queenslandica)

organism: Amphimedon queenslandica


title: Illumina HiSeq 2500 (Bubalus carabanensis)

status: Public on Dec 14 2018

organism: Bubalus kerabau


title: Illumina HiSeq 2500 (Galleria mellonella)

organism: Galleria mellonella


title: Agilent-085624 PBM array

city: Boston

first: Trevor

last: Siggers

state: MA

address: 24 Cummington Mall

department: Department of Biology

institute: Boston University

organism: Homo sapiens

description: a microarray-based platform to study protein-DNA binding (the protein-binding microarray or PBM).

manufacture_protocol: See manufacturer's web site (www.agilent.com).


title: Illumina NextSeq 500 (Enterobacteria phage T7; Escherichia coli)

organism:
Escherichia coli
Escherichia phage T7


title: Agilent-044312 Human 8x60K Custom Exon array (Probe Name version)

status: Public on Dec 16 2018

city: Kuopio

first: Mikael

last: Marttinen

address: Yliopistonranta 1E

department: Biomedicine

country: Finland

institute: University of Eastern Finland

description:
The exon array allowed for the identification of 19,367 unique transcripts from 60 human temporal cortical samples. On average 1-3 probes were designed for one gene, excluding a specific set of genes, which have custom probes designed identifying each exon of the gene. Custom probes are denoted A_xx_Pxxxxxx, whereas stock probes are denoted FILL_xx_Pxxxxxx.

hg19 genome assembly used for array design.


title: Illumina Genome Analyzer (Mus musculus; Streptococcus pneumoniae)

organism:
Streptococcus pneumoniae
Mus musculus


title: Agilent-085106 PBM array


title: Illumina NextSeq 500 (Sordaria fimicola)

status: Public on Dec 13 2018

organism: Sordaria fimicola


title: Illumina NextSeq 500 (Heliconius melpomene aglaope)

status: Public on Dec 12 2018

organism: Heliconius melpomene aglaope


title: HiSeq X Ten (Mesostigma viride)

organism: Mesostigma viride


title: Illumina HiSeq 2500 (Lactobacillus rhamnosus)

organism: Lacticaseibacillus rhamnosus


title: UCSF human Research Genetics clones array

city: Bruxelles

first: David

last: Venet

address: Avenue Franklin Roosevelt 50

department: BCTL

institute: Université Libre de Bruxelles

technology: spotted DNA/cDNA

distribution: non-commercial

manufacture_protocol: Clones from the Research Genetics clone set (Research Genetics, Huntsville AL) were PCR amplified using universal primers, band size was verified, clones were precipitated, dissolved in 3 × SSC, and printed on poly-L-lysine (Sigma, St Louis, MO) coated slides. Microarrays consisted of 32 subarrays, each 18 rows by 18 columns, for a total of 10,368 spots.


title: Illumina NextSeq 500 (Heliconius melpomene rosina)

organism: Heliconius melpomene rosina


title: Infinium OmniExpress-24v1-2_A1

city: Salt Lake City

first: Roberto

middle: Henrique

last: Nussenzveig

state: Utah

address: 2000 Circle of Hope

department: Oncology

institute: University of Utah/Huntsman Cancer Institute

technology: oligonucleotide beads

manufacture_protocol: See manufacturer's website


title: Illumina MiSeq (Mycolicibacterium smegmatis MC2 155)

status: Public on Dec 11 2018

organism: Mycolicibacterium smegmatis MC2 155


title: Nanostring pancancer

city: bethesda

first: james

middle: w

last: hodge

state: md

address: 10/8b13, 9000 rockville pike

department: LTIB

institute: NCI


title: Illumina NextSeq 500 (Plasmodium falciparum 3D7)

organism: Plasmodium falciparum 3D7


title: Illumina Genome Analyzer (Homo sapiens; Klebsiella pneumoniae)

organism:
Klebsiella pneumoniae
Homo sapiens


title: Illumina MiSeq (Helix lucorum)

status: Public on Dec 10 2018

organism: Helix lucorum


title: Illumina HiSeq 2000 (Macrostomum lignano)

organism: Macrostomum lignano


title: Illumina HiSeq 2500 (Cyprinodon variegatus)

status: Public on Dec 06 2018

organism: Cyprinodon variegatus


title: Illumina Genome Analyzer IIx (Avicennia germinans)

organism: Avicennia germinans


title: Agilent-072627 Streptococcus agalactiae SA-2015-v2

city: Belo Horizonte

first: Henrique

middle: César Pereira

last: Figueiredo

state: Minas Gerais

address: Av. Antônio Carlos 6627, Caixa Postal 567, Pampulha

country: Brazil

institute: AQUACEN - National Reference Laboratory for Aquatic Animal Diseases

organism: Streptococcus agalactiae

description:
Strepto agalactiae pan fish

Arrays of this design have barcodes that begin with 16072627 or 2572627.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 4000 (Aspergillus fumigatus Af293)

organism: Aspergillus fumigatus Af293


title: Illumina HiSeq 2000 (Brassica rapa subsp. trilocularis)

organism: Brassica rapa subsp. trilocularis


title: [HG_U95Av2] Affymetrix Human Genome U95 Version 2 Array

status: Public on Mar 16 2009

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

organism: Homo sapiens

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 08, 2012: annotation table updated with netaffx build 32
June 27, 2016: annotation table updated with netaffx build 35

manufacture_protocol:
see manufacturer's web site

Based on this UniGene build and associated annotations, the HG-U95Av2 array represents approximately 10,000 full-length genes.


title: Ion Torrent PGM (Nitrospira moscoviensis)

organism: Nitrospira moscoviensis


title: Illumina HiSeq 4000 (Fagopyrum hailuogouense)

status: Public on Dec 05 2018

organism: Fagopyrum hailuogouense


title: Illumina HiSeq 2000 (Helix lucorum)


title: Illumina HiSeq 2500 (Shigella flexneri)

organism: Shigella flexneri


title: Illumina HiSeq 4000 (Neisseria gonorrhoeae)

organism: Neisseria gonorrhoeae


title: Illumina HiSeq 2000 (Streptococcus pneumoniae D39)

organism: Streptococcus pneumoniae D39


title: Illumina NextSeq 500 (Erythranthe pardalis)

organism: Erythranthe pardalis


title: Illumina HiSeq 2500 (Xenotilapia ornatipinnis)

status: Public on Dec 03 2018

organism: Xenotilapia ornatipinnis


title: Qiagen Mouse Inflammatory Response and Autoimmunity PCR Array (PAMM-077Z)

status: Public on Dec 04 2018

city: Bloomington

first: Patricia

last: Silveyra

email: psilveyr@iu.edu, ptrcslvr@gmail.com

state: Indiana

department: Environmental and Occupational Health

institute: Indiana University Bloomington

organism: Mus musculus

manufacture_protocol:
See manufacturer's website
PCR assay
The Mouse Inflammatory Response & Autoimmunity RT² Profiler PCR Array profiles the expression of 84 key genes involved in autoimmune and inflammatory immune responses. It represents the expression of inflammatory cytokines and chemokines as well as their receptors. It also contains genes related to the metabolism of cytokines and involved in cytokine-cytokine receptor interactions. Thoroughly researched panels of genes involved in the acute-phase response, inflammatory response, and humoral immune responses are represented as well. Using real-time PCR, you can easily and reliably analyze expression of a focused panel of genes related to inflammatory and autoimmune responses with this array.
https://www.qiagen.com/us/shop/pcr/primer-sets/rt2-profiler-pcr-arrays/?catno=PAMM-077Z#geneglobe


title: Illumina NextSeq 500 (Erythranthe pardalis x Erythranthe guttata)


title: HiSeq X Ten (Rattus rattus)

organism: Rattus rattus


title: Illumina HiSeq 4000 (Homo sapiens; Neisseria gonorrhoeae)

organism:
Neisseria gonorrhoeae
Homo sapiens


title: Illumina MiSeq (Phaseolus vulgaris)

organism: Phaseolus vulgaris


title: Illumina HiSeq 2000 (Haemaphysalis longicornis)

organism: Haemaphysalis longicornis


title: Illumina HiSeq 2500 (Ranitomeya imitator)

organism: Ranitomeya imitator


title: Illumina HiSeq 2500 (Oophaga pumilio)

organism: Oophaga pumilio


title: Illumina HiSeq 2500 (Anthus spinoletta)

organism: Anthus spinoletta


title: BGISEQ-500 (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: Illumina HiSeq 2500 (Peromyscus californicus)

organism: Peromyscus californicus


title: Illumina HiSeq 2500 (Trichoderma atroviride)

organism: Trichoderma atroviride


title: Illumina HiSeq 2500 (Xenotilapia spiloptera)

organism: Xenotilapia spiloptera


title: Illumina HiSeq 2500 (Chlorogloeopsis fritschii PCC 9212)

organism: Chlorogloeopsis fritschii PCC 9212


title: Illumina HiSeq 2500 (Peromyscus maniculatus)

organism: Peromyscus maniculatus


title: Illumina HiSeq 2500 (Prunella modularis)

organism: Prunella modularis


title: Illumina HiSeq 2500 (Microtus pennsylvanicus)

organism: Microtus pennsylvanicus


title: Agilent Custom Whole Genome Tomato 8x60K (AMADID: 065951) designed  by Genotypic Technology Private LTD

status: Public on Dec 01 2018

city: Bangalore

first: Genotypic

last: technology

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

organism: Solanum lycopersicum


title: Illumina NextSeq 500 (Rosa hybrid cultivar)

organism: Rosa hybrid cultivar


title: Illumina HiSeq 2000 (Populus tomentosa)

status: Public on Jun 21 2017

organism: Populus tomentosa


title: University of Utah (Mus musculus) (30 samples) (RPPA 245 antibodies)

first: Sheri

last: Holmen

state: UT

address: 2000 Circle of Hope Dr.

department: Surgery

institute: University of Utah

organism: Mus musculus


title: Illumina MiSeq (Trichoderma atroviride)


title: FZ_IBG1_4plex_069318

city: Juelich

first: Tino

last: Polen

state: NRW

address: Wilhelm-Johnen-Str 1

department: IBG-1: Biotechnology

country: Germany

institute: Forschungszentrum Jülich GmbH

organism:
Pseudomonas putida
Gluconobacter oxydans
Escherichia coli
Corynebacterium glutamicum
Bacillus subtilis subsp. subtilis str. 168

manufacturer: Agilent Technologies (Waldbronn, Germany)

manufacture_protocol: see Agilent Technologies


title: Illumina NextSeq 500 (Sindbis virus)

organism: Sindbis virus


title: Illumina MiSeq (Homo sapiens; Human bocavirus)

organism:
Homo sapiens
Human bocavirus


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENSG_22]

status: Public on Jul 24 2018

organism: Homo sapiens

manufacture_protocol: see manufacturer's protocol


title: GeneSeek Genomic Profiler (GGP) Porcine Bead Chip 80K

city: Kongens Lyngby

first: Haja

middle: N

last: Kadarmideen

address: Richard Petersens Plads, Building 324

department: Department of Applied Mathematics and Computer Science

country: Denmark

institute: Technical University of Denmark

organism: Sus scrofa

manufacture_protocol: see website


title: Illumina HiSeq 2000 (Streptococcus sanguinis)

status: Public on Nov 17 2016

last: GEO

organism: Streptococcus sanguinis


title: Agilent-078472 Mytilus galloprovincialis [Feature Number version]

status: Public on Oct 10 2018

city: Leioa

first: Daniel

last: Prieto

address: Barrio Sarriena s/n

country: Spain

institute: University of the Basque Country

organism: Mytilus galloprovincialis


title: [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array

status: Public on Nov 07 2003

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 08, 2012: annotation table updated with netaffx build 32
July 01, 2016: annotation table updated with netaffx build 35

relation: Alternative to: GPL5356 (Alternative CDF)

relation: Alternative to: GPL5705 (Alternative CDF)

relation: Alternative to: GPL7763 (Alternative CDF)

relation: Alternative to: GPL8414 (Alternative CDF)

relation: Alternative to: GPL9188 (Alternative CDF)

relation: Alternative to: GPL13447 (Alternative CDF [Ensembl v58, Hs133Av2_Hs_ENSG])

relation: Alternative to: GPL14604 (Alternative CDF [Brainarray Version 10, Hs133Av2_Hs_ENTREZG])

relation: Alternative to: GPL17486 (Alternative CDF)

relation: Alternative to: GPL18991 (Alternative CDF [HGU133A2_Hs_ENTREZG_16.0.0])

manufacture_protocol:
see manufacturer's web site

The GeneChip Human Genome U133A 2.0 Array is a single array representing 14,500 well-characterized human genes that can be used to explore human biology and disease processes.
Provides coverage of well-substantiated genes in the transcribed human genome on a single array
Analyzes the expression level of 18,400 transcripts and variants, including 14,500 well-characterized human genes
Comprised of more than 22,000 probe sets and 500,000 distinct oligonucleotide features
All probe sets represented on the GeneChip Human Genome U133A Array are identically replicated on the GeneChip Human Genome U133A 2.0 Array
Sequences used in the design of the array were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 133, April 20, 2001) and then were refined by analysis and comparison with a number of other publicly available databases including the Washington University EST trace repository and the University of California, Santa Cruz Golden-Path human genome database (April 2001 release).


title: Infinium Global Screening Array

status: Public on Dec 26 2018

city: Clayton

first: Justin

middle: C

last: St. John

state: Vic

address: 27-31 Wright St

department: Centre for Genetic Diseases

country: Australia

institute: Hudson Institute of Medical Research


title: [Scerevisiae_tlg] Affymetrix Saccharomyces cerevisiae tiling array

status: Public on Mar 25 2015

last: admin

organism: Saccharomyces cerevisiae

description: The platform contains 25 nucleotide probes spaced every 8 bp covering one strand of the whole /Saccharomyces cerevisiae/ genome sequence and a second set of probes offset 4 bp from the first set to cover the other strand.  Lee et al. (2007) Nature Genetics 39: 1235-1244.

manufacture_protocol: see manufacturer's web site


title: Illumina NextSeq 500 (Pan troglodytes)

status: Public on Nov 11 2015

organism: Pan troglodytes


title: Agilent-074348 Human LncRNA v6 4X180K [Probe Name Version]

status: Public on Oct 20 2015

city: shanghai

first: qian

last: jin

address: libing road

institute: MSP

description: Chromosomal coordinates are based on genome version hg38.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: [wheat] Affymetrix Wheat Genome Array

status: Public on May 26 2006

organism: Triticum aestivum

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

This array contains 61,127 probe sets representing 55,052 transcripts for all 42 chromosomes in the wheat genome. Sequence information for the GeneChip Wheat Genome Array includes public content from Triticum aestivum UniGene Build #38 (build date April 24, 2004). Also included are ESTs from the wheat species T. monococcum, T. turgidum, and Aegilops tauschii, and GenBank full-length mRNAs from all species through May 18, 2004.


title: NextSeq 550 (Danio rerio)

status: Public on Dec 11 2018

organism: Danio rerio


title: 3D-Gene Human miRNA V20_1.0.0

status: Public on Jul 15 2014

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: Tebiro 6-10-1

department: New Projects Development Division

institute: Toray Industries,Inc.


title: Illumina NextSeq 500 (Plasmodium falciparum)

status: Public on Jan 05 2016

organism: Plasmodium falciparum


title: Illumina HiSeq 3000 (Homo sapiens)

status: Public on Dec 31 2015


title: Illumina HiScanSQ (Homo sapiens)

status: Public on Apr 17 2012


title: Illumina NextSeq 500 (Macaca mulatta)

organism: Macaca mulatta


title: Illumina HiSeq 2500 (Zea mays)

status: Public on Aug 26 2013

organism: Zea mays


title: NextSeq 550 (Homo sapiens)

status: Public on Apr 05 2016


title: Illumina Genome Analyzer II (Homo sapiens)

status: Public on Aug 27 2009


title: Illumina HiSeq 2000 (Arabidopsis thaliana)

status: Public on Feb 24 2011

organism: Arabidopsis thaliana


title: NextSeq 550 (Drosophila melanogaster)

status: Public on Jul 01 2016

organism: Drosophila melanogaster


title: Illumina NovaSeq 6000 (Rattus norvegicus)

status: Public on Dec 18 2018

organism: Rattus norvegicus