title: 037907-Agilent Fragaria x ananassa FraGenomics 35k [Probe name version]

status: Public on Oct 18 2019

city: CÓRDOBA

first: Francisco

middle: Javier

last: Molina-Hidalgo

state: Cordoba

address: Edif. Severo Ochoa (C6.) Planta Baja-Ala Norte Campus de Rabanales

department: Biochemistry and molecular biology

country: Spain

institute: University of Cordoba

organism: Fragaria x ananassa

technology: in situ oligonucleotide

description: This array of 60-mer probes is based on the Nimblegen Array 110713_Fragaria_JMB_exp (GPL23035). The Nimblegen design files attached to this record contain accurate gene description and probe sequence information for this Agilent array.  However, the Agilent array does not contain all probes listed in the .ndf file and includes additional probes not listed in the .ndf file.  Probe sequences for non-control probes are available in the platform table and in the supplementary file 037907_Annotation.txt available at the foot of this record.

distribution: custom-commercial


title: Illumina NextSeq 500 (Homo sapiens; Human alphaherpesvirus 1)

status: Public on Feb 28 2019

last: GEO

country: USA

organism:
Homo sapiens
Human alphaherpesvirus 1

technology: high-throughput sequencing

distribution: virtual


title: Illumina NextSeq 500 (Human alphaherpesvirus 1; Mus musculus)

organism:
Mus musculus
Human alphaherpesvirus 1


title: BGISEQ-500 (Brassica oleracea)

organism: Brassica oleracea


title: Agilent-051449 ARS Cattle 970K CGH

city: Beltsville

first: George

middle: E.

last: Liu

state: Maryland (MD)

address: 10300 Baltimore Ave Bldg 306

institute: USDA-ARS

organism: Bubalus bubalis

distribution: non-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 4000 (Rhodotorula toruloides)

organism: Rhodotorula toruloides


title: GenoExplorerTM microRNA array ver.2007

city: Cleveland

first: Shiv

middle: Shankar

last: Verma

state: Ohio

address: 10900 Euclid Avenue

department: Department of Urology

institute: Case Western Reserve University

organism: Homo sapiens

technology: spotted oligonucleotide

description: This array was purchased from GenoSensor Corporation in 2007.

distribution: commercial

manufacture_protocol: Please see complete manufacturer information at http://www.genosensorcorp.com/info_about_service.html


title: Agilent-078298 human ceRNA array V1.0 4X180K [Feature number version]

status: Public on Jun 20 2019

city: Shanghai

first: ZHUOAN

last: CHENG

state: Shanghai

address: 2200 Nong, Xietu road

country: China

institute: Shanghai Jiaotong University

relation: Alternative to: GPL22120 (Probe name version)


title: ThermoFisher 10-plex Tandem Mass Tag (TMT) Mass Spectrometry

status: Public on May 07 2019

city: Boston

first: Lorena

last: Pantano

state: MA

address: 655 Huntington Ave

department: Biostatistics

institute: Harvard Chan School of Public Health

organism: Mus musculus

technology: MS

description: Protein Quantitation Using Mass Spectrometry


title: [MedTA-1_0] Affymetrix GeneChip Medicago Transcriptome Assay

status: Public on Feb 27 2019

city: Hannover

first: Helge

last: Küster

address: Herrenhäuser Str. 2

department: Institut für Pflanzengenetik

country: Germany

institute: Leibniz Universität Hannover

organism: Medicago truncatula

manufacture_protocol: see manufacturer's webiste


title: Agilent Custom Whole Genome Schizosaccharomyces pombe 8x15K (AMADID: 067936) (Genotypic Technology Private Ltd)

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Schizosaccharomyces pombe


title: Illumina HiSeq 2000 (Tamarix ramosissima)

status: Public on Feb 26 2019

organism: Tamarix ramosissima


title: Illumina HiSeq 2000 (Tamarix chinensis)

organism: Tamarix chinensis


title: Agilent-084537 Buna Custom array 8x60K (Probe name version)

city: Fukuoka

first: Akiko

last: Satake

state: Fukuoka

address: 744 Motooka, Nishi-ku

department: Department of Biology Faculty of Sciences

country: Japan

institute: Kyushu University

organism: Fagus crenata

description:
Arrays of this design have barcodes that begin with 16084537 or 2584537.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction NAME.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: [MoGene-1_1-st] Affymetrix Mouse Gene 1.1 ST Array [transcript (gene) version] [CDF: mogene11st_Mm_ENTREZG_22.0.0]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: See manufacturer's web site (www.agilent.com).


title: LC_MRA-2001_Mouse miRNA Array [miRMouse_17_SXH_110728]

city: hunan

first: Rongrong

last: Cui

address: 139，renming road

institute: The second Xiangya hospital of central south university

description: Based on Sanger miRBase Release 17

manufacture_protocol: Custom sheep miRNA microarray targeting the mature miRNAs of Ovis aries. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) and sequences obtained by next-gen sequencing or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.


title: Illumina HiSeq 2000 (Xanthomonas oryzae pv. oryzicola)

status: Public on Feb 25 2019

organism: Xanthomonas oryzae pv. oryzicola


title: [miRNA-3] Affymetrix Multispecies miRNA-4 Array [Brain Array V21]

city: MILAN

first: Luca

last: Agnelli

address: Venezian 1

department: Department of Advanced Diagnostics

country: Italy

institute: IRCCS Istituto Nazionale dei Tumori

organism: synthetic construct

manufacture_protocol: See manufacturer's web site


title: HiSeq X Ten (Drosophila melanogaster; Homo sapiens)

organism:
Drosophila melanogaster
Homo sapiens


title: Agilent-084318 B. kashiwanohense HKW46A

status: Public on Feb 24 2019

city: Cork

first: Kieran

last: James

address: Biosciences Institute, Gaol Cross, Western Road

department: Microbiology

country: Ireland

institute: APC Microbiome Institute, University College Cork

organism: Bifidobacterium catenulatum subsp. kashiwanohense

description:
B. kashiwanohense HKW46A Array
Arrays of this design have barcodes that begin with 16084318 or 2584318.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Lotus japonicus)

organism: Lotus japonicus


title: Illumina NextSeq 500 (Lotus japonicus; Mesorhizobium loti)

organism:
Mesorhizobium loti
Lotus japonicus


title: HiSeq X Ten (Brucella abortus 2308)

status: Public on Feb 22 2019

organism: Brucella abortus 2308


title: Illumina HiSeq 2500 (human metagenome)

status: Public on Feb 21 2019

organism: human metagenome


title: [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [CDF: mogene10st_Mm_ENTREZG_22.0.0]

manufacture_protocol: This is identical to GPL6246 but a custom cdf environment was used to extract data. The cdf can be found at the link below.


title: Illumina HiSeq 2000 (Penicillium expansum)

organism: Penicillium expansum


title: Illumina NextSeq 500 (Medicago truncatula; Sinorhizobium meliloti)

organism:
Sinorhizobium meliloti
Medicago truncatula


title: Illumina MiSeq (human metagenome)


title: Illumina HiSeq 4000 (Epinephelus coioides)

status: Public on Feb 15 2019

organism: Epinephelus coioides


title: Illumina HiSeq 2000 (Narcissus tazetta subsp. chinensis)

status: Public on Feb 19 2019

organism: Narcissus tazetta subsp. chinensis


title: Illumina HiSeq 4000 (Giardia lamblia ATCC 50803)

organism: Giardia lamblia ATCC 50803


title: Illumina HiSeq 4000 (Acipenser sinensis)

organism: Acipenser sinensis


title: Illumina HiSeq 4000 (Erythrobacter litoralis)

status: Public on Feb 13 2019

organism: Erythrobacter litoralis


title: Illumina MiSeq (Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759)


title: Agilent-049635 ZV9-1M_BrownLabV1

status: Public on Feb 12 2019

city: Portland

first: Kim

middle: H

last: Brown

state: OR

address: 1719 SW 10th Ave

department: Department of Biology

institute: Portland State University

organism: Danio rerio

description:
ZV9 version 1 for Brown Lab
Arrays of this design have barcodes that begin with 16049635 or 2549635.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-042422 BaJSTarrayversion2 039515

city: Roscoff

first: Arnaud

last: TANGUY

address: Place Georges Teissier

department: Station Biologique

country: France

institute: Sorbonne University

organism: Bathymodiolus azoricus

description:
Arrays of this design have barcodes that begin with 16042422 or 2542422.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: RT² Profiler PCR Array Mouse DNA Damage Signaling Pathway [PAMM-029Z]

city: Ribeirao Preto

first: Vinicius

last: Kannen

state: SP

address: Av Café, s/ N°

department: DACTB

country: Brazil

institute: Universidade de São Paulo

organism: Mus musculus

technology: RT-PCR

description:
Fluidigm BioMark Real-Time PCR System.
Qiagen RT² Profiler PCR arrays.

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 2500 (Drosophila suzukii)

status: Public on Feb 18 2019

organism: Drosophila suzukii


title: BGISEQ-500 (Fagopyrum tataricum)

status: Public on Feb 14 2019

organism: Fagopyrum tataricum


title: NextSeq 550 (Escherichia coli K-12)

organism: Escherichia coli K-12


title: Sequel (synthetic RNA)

organism: synthetic RNA


title: Illumina HiSeq 4000 (Mus musculus domesticus x Mus spretus)

organism: Mus musculus domesticus x Mus spretus


title: Illumina HiSeq 4000 (Mus musculus domesticus)

organism: Mus musculus domesticus


title: Illumina HiSeq 4000 (Mus spretus)

organism: Mus spretus


title: Illumina HiSeq 1500 (West Nile virus)

organism: West Nile virus


title: Agilent-025055 Koop Lab Salmonid 44k (contains controls)

organism: Salmo salar

description: Arrays of this design have barcodes that begin with 16025055 or 2525055.


title: Illumina NextSeq 500 (Caulobacter vibrioides NA1000)

organism: Caulobacter vibrioides NA1000


title: Illumina NextSeq 500 (Homo sapiens; Neisseria meningitidis MC58)

organism:
Homo sapiens
Neisseria meningitidis MC58


title: Complete Genomics (Mus musculus)


title: Illumina HiSeq 2000 (Adonis amurensis)

organism: Adonis amurensis


title: Illumina HiSeq 3000 (Arabis alpina)

organism: Arabis alpina


title: Illumina HiSeq 2000 (Leersia perrieri)

organism: Leersia perrieri


title: Illumina HiSeq 2500 (Mycolicibacterium smegmatis)

status: Public on Feb 20 2019

organism: Mycolicibacterium smegmatis


title: Illumina MiSeq (Expression vector lentiGuide-Puro)

status: Public on Feb 08 2019

organism: Expression vector lentiGuide-Puro


title: Illumina HiSeq 2500 (Pyrus)

status: Public on Feb 07 2019

organism: Pyrus


title: GridION (Saccharomyces cerevisiae SK1)

organism: Saccharomyces cerevisiae SK1


title: Illumina NextSeq 500 (Mus musculus musculus x M. m. castaneus)

organism: Mus musculus musculus x Mus musculus castaneus


title: Sequel (synthetic construct)

organism: synthetic construct


title: Illumina MiSeq (Tachycineta bicolor)

organism: Tachycineta bicolor


title: QIAGEN Human Extracellular Matrix & Adhesion Molecules RT Profiler PCR Array (PAHS-013Z)

city: Okayama

first: Kazuhiko

last: Kurozumi

state: Okayama

address: 2-5-1, Shikata-cho, Kita-ku

department: Neurological Surgery

institute: Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences

organism: Homo sapiens

description: PCR assay


title: Sequel (Caenorhabditis elegans)

organism: Caenorhabditis elegans


title: Applied Biosystems QuantStudio 12K Flex Real-Time PCR System customized OpenArray plate

city: Hong Kong

first: Tongtong

last: Kan

address: 83 Tat Chee Avenue

institute: City University of Hong Kong

manufacture_protocol:
see manufacturer's website
TaqMan OpenArray Real-Time PCR Custom Assays


title: Illumina HiSeq 2000 (Oryza brachyantha)

last: GEO

organism: Oryza brachyantha


title: [Clariom_S_Human_HT] Affymetrix Clariom S Assay HT, Human [gene level]

status: Public on Feb 06 2019

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 2500 (Phaeobacter inhibens)

organism: Phaeobacter inhibens


title: Illumina HiSeq 2000 (Oryza punctata)

organism: Oryza punctata


title: Illumina Genome Analyzer II (Oryza brachyantha)


title: [Pf_SNP_2_geno_pm] Affymetrix Plasmodium falciparum 75K SNP

status: Public on Feb 11 2019

city: Hamilton

first: Dan

last: Sturdevant

state: MT

address: 903 S 4th street

department: NIAID

institute: NIH

organism: Plasmodium falciparum

description:
Affymetrix-Pf-75k-SNP
Pf_SNP 2m520607 49 format

manufacture_protocol: Affymetrix protocols; see web site (www.affymetrix.com) for details.


title: Illumina Genome Analyzer II (Staphylococcus epidermidis)

status: Public on Feb 05 2019

organism: Staphylococcus epidermidis


title: Illumina HiSeq 2500 (Mycolicibacterium smegmatis MC2 155)

organism: Mycolicibacterium smegmatis MC2 155


title: Biomark microfluidic qRT-PCR array

status: Public on Feb 04 2019

city: Stanford

first: Purvesh

last: Khatri

state: CA

address: 279 Campus Dr., Beckman B235A

department: Medicine

institute: Stanford University

description: PCR assay


title: Illumina HiSeq 2500 (Phaeobacter inhibens DSM 17395)

organism: Phaeobacter inhibens DSM 17395


status: Public on Feb 01 2019

city: Hangzhou

first: Chengliang

last: Zhou

state: Zhejiang

address: No. 866th, Yuhangtang Road

department: School of Medicine

institute: Zhejiang University

description:
PCR assay
Qiagen Human Insulin Resistance RT2 profiler PCR array


title: [RaGene-2_0-st] Affymetrix Rat Gene 2.0 ST Array [ragene20st_Rn_ENTREZG_21]

organism: Rattus norvegicus


title: NanoString nCounter Mouse Gene Expression Custom CodeSet

first: Alberto

last: Caminero

state: ON

address: 1280 Main St W

country: Canada

institute: McMaster University

organism: Mus musculus

technology: other


title: Illumina MiSeq (Hepatitis B virus; Homo sapiens)

status: Public on Apr 30 2018

organism:
Homo sapiens
Hepatitis B virus


title: Illumina MiSeq (Measles morbillivirus)

organism: Measles morbillivirus


title: Agilent-069318 FZ_IBG1_4plex array (Feature number version)

status: Public on Dec 01 2018

city: Juelich

first: Tino

last: Polen

state: NRW

address: Wilhelm-Johnen-Str 1

department: IBG-1: Biotechnology

institute: Forschungszentrum Jülich GmbH

organism:
Gluconobacter oxydans
Escherichia coli
Corynebacterium glutamicum
Pseudomonas putida KT2440
Bacillus subtilis subsp. subtilis str. 168

description:
Bacillus subtilis str. 168 (NC_000964), Corynebacterium glutamicum (NC_006958), Escherichia coli (NC_000913), Pseudomonas putida KT244 (NC_002947), Gluconobacter oxydans (NC_006677, NC_006672, NC_006673, NC_006674, NC_006675, NC_006676)
FZ_IBG1_4plex_069318

manufacturer: Agilent Technologies (Waldbronn, Germany)

manufacture_protocol: see Agilent Technologies


title: Illumina HumanWG-6 v3.0 expression beadchip (gene symbol)

status: Public on Mar 06 2014

technology: oligonucleotide beads

description:
The HumanWG-6 v3.0 Expression BeadChip features up-to-date content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36.2, Release 22).

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data.  These should be submitted as part of a GEOarchive.  Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html


title: Illumina NextSeq 500 (Tachycineta bicolor)


title: Illumina Genome Analyzer (Pseudomonas aeruginosa)

status: Public on Sep 27 2016

organism: Pseudomonas aeruginosa


title: Agilent-054270 8x60K_O.sativa_ssp_Indica_exp-val_07-2013 054269 (Probe name version)

city: Los Banos

last: Sreenivasulu

address: Metro Manila

country: Philippines

institute: IRRI

organism: Oryza sativa Indica Group

description:
8x60K O.sativa ssp. Indica 07-2013; experimentally validated; OakLabs MyArray

Arrays of this design have barcodes that begin with 16054270 or 2554270.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NextSeq 550 (Mycobacterium tuberculosis H37Rv)

organism: Mycobacterium tuberculosis H37Rv


title: [Clariom_S_Rat_HT] Affymetrix Clariom S Assay HT, Rat (Includes Pico Assay)

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

description:
This platform supports submissions for:
Clariom S Assay:
https://www.thermofisher.com/order/catalog/product/902974
Clariom S Pico Assay:
https://www.thermofisher.com/order/catalog/product/902967

Annotations:
#%lib_set_version=r1
#%genome-species=Rattus norvegicus
#%genome-version=rn6
#%genome-version-ucsc=rn6
#%genome-version-ncbi=Rnor_6.0
#%genome-version-create_date=2014-07-30
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Rattus norvegicus
#%genome-lifted_from-version-ucsc=rn6
#%genome-lifted_from-version-ncbi=Rnor_6.0
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36


title: GeoChip 4.6

status: Public on Nov 21 2017

city: Beijing

first: Yunfeng

last: Yang

address: No.1 Qinghuayuan, Haidian District

department: School of Environment

institute: Tsinghua University

organism: uncultured soil microorganism


title: Illumina HiSeq 3000 (Escherichia coli)

organism: Escherichia coli


title: Nanostring Immune Oncology 360 platform

city: New Haven

first: Lajos

last: Pusztai

state: CT

address: 300 George St., Suite 120

institute: Yale University

organism: Homo sapiens

description: NanoString IO360 panel (beta version) codeset

manufacture_protocol: see web site


title: Illumina NextSeq 500 (Klebsiella pneumoniae)

status: Public on Jun 08 2018

organism: Klebsiella pneumoniae


title: Sequel (Homo sapiens)

status: Public on Feb 12 2019


title: Illumina HiSeq 2500 (Klebsiella pneumoniae)


title: Illumina HumanWG-6 v3.0 expression beadchip

status: Public on May 21 2008

city: San Diego

last: Illumina Inc.

address: 9885 Towne Centre Drive

institute: Illumina Inc.


title: HiSeq X Ten (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: Illumina Human v2 MicroRNA expression beadchip

status: Public on Feb 11 2009

description:
The human v2 miRNA panel targets 1,146 human miRNAs (> 97% coverage of miRBase release 12)

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data.  These should be submitted as part of a GEOarchive.  Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html


title: Illumina HiSeq 3000 (Mus musculus)

status: Public on Feb 22 2016


title: [Clariom_S_Rat] Affymetrix Clariom S Assay, Rat (Includes Pico Assay)

status: Public on Feb 07 2017

description:
This platform supports submissions for:
Clariom S Assay:
https://www.thermofisher.com/order/catalog/product/902935
Clariom S Pico Assay:
https://www.thermofisher.com/order/catalog/product/902937

Annotations:
#%lib_set_version=r1
#%genome-species=Rattus norvegicus
#%genome-version=rn6
#%genome-version-ucsc=rn6
#%genome-version-ncbi=Rnor_6.0
#%genome-version-create_date=2014-07-30
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Rattus norvegicus
#%genome-lifted_from-version-ucsc=rn6
#%genome-lifted_from-version-ncbi=Rnor_6.0
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36


title: Agilent-078298 human ceRNA array V1.0 4X180K [Probe Name Version]

status: Public on Jul 06 2016

city: shanghai

first: qian

last: jin

address: libing road

institute: MSP

relation: Alternative to: GPL26192 (Feature number version)


title: [RaGene-2_0-st] Affymetrix Rat Gene 2.0 ST Array [transcript (gene) version]

status: Public on May 06 2013

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Thu Mar 28 17:32:27 2013 PDT
#%chip_type=RaGene-2_0-st-v1
#%lib_set_name=RaGene-2_0-st
#%lib_set_version=v1
#%genome-species=Rattus norvegicus
#%genome-version=rn4
#%genome-version-ucsc=rn4
#%genome-version-ncbi=Rnor3.4
#%genome-version-create_date=2004-11-00
#%genome-lifted_from-species=Rattus norvegicus
#%genome-lifted_from-version-ucsc=rn4
#%genome-lifted_from-version-ncbi=Rnor3.4
#%netaffx-annotation-date=2012-09-30
#%netaffx-annotation-netaffx-build=33

relation: Alternative to: GPL17799 (Alternative CDF)

relation: Alternative to: GPL20091 (alternative CDF [ragene20st_Rn_ENST_19.0.0])

relation: Alternative to: GPL26164 (Alternative CDF [ragene20st_Rn_ENTREZG_21])


title: Illumina NextSeq 500 (Homo sapiens; Mus musculus)

status: Public on Nov 14 2014

organism:
Homo sapiens
Mus musculus


title: Illumina MiSeq (Saccharomyces cerevisiae)

status: Public on May 08 2013


title: [Clariom_S_Mouse_HT] Affymetrix Clariom S Assay HT, Mouse (Includes Pico Assay)

status: Public on Nov 07 2017

description:
This platform supports submissions for:
Clariom S Assay HT:
https://www.thermofisher.com/order/catalog/product/902971
Clariom S Pico Assay HT:
https://www.thermofisher.com/order/catalog/product/902966

Annotations:
#%lib_set_version=r1
#%genome-species=Mus musculus
#%genome-version=mm10
#%genome-version-ucsc=mm10
#%genome-version-ncbi=38
#%genome-version-create_date=2011-12-00
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Mus musculus
#%genome-lifted_from-version-ucsc=mm10
#%genome-lifted_from-version-ncbi=38
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36

manufacture_protocol: See manufacturer's web site (www.affymetrix.com).


title: [Clariom_S_Mouse] Affymetrix Clariom S Assay, Mouse (Includes Pico Assay)

description:
This platform supports submissions for:
Clariom S Assay:
https://www.thermofisher.com/order/catalog/product/902930
Clariom S Pico Assay:
https://www.thermofisher.com/order/catalog/product/902933

Annotations:
#%lib_set_version=r1
#%genome-species=Mus musculus
#%genome-version=mm10
#%genome-version-ucsc=mm10
#%genome-version-ncbi=38
#%genome-version-create_date=2011-12-00
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Mus musculus
#%genome-lifted_from-version-ucsc=mm10
#%genome-lifted_from-version-ncbi=38
#%netaffx-annotation-date=2016-06-03
#%netaffx-annotation-netaffx-build=36


title: Illumina Genome Analyzer (Homo sapiens)

status: Public on Aug 18 2009


title: Agilent-025055 Koop Lab Salmonid 44k

status: Public on Dec 10 2010

city: Victoria

first: Ben

middle: F

last: Koop

state: BC

address: PO Box 3020 STN CSC

department: Biology

institute: The University of Victoria

organism: Salmo salar


title: Illumina MiSeq (Drosophila melanogaster)

status: Public on Jan 08 2013

organism: Drosophila melanogaster


title: Illumina HiSeq 1000 (Mus musculus)

status: Public on Jan 09 2012


title: [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]

status: Public on May 21 2007

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
Oct 11, 2012: annotation table updated with netaffx build 32

relation: Alternative to: GPL10200 (Alternative CDF [Brainarray v11.0.1, ENTREZG])

relation: Alternative to: GPL10264 (Alternative CDF)

relation: Alternative to: GPL10588 (Alternative CDF [HuEx10stv2_Hs_VEGAG_v10])

relation: Alternative to: GPL10647 (Alternative CDF [HsEx10stv2_Hs_ENTREZG])

relation: Alternative to: GPL13454 (Alternative CDF [huex10stv2_58_37c_0112.cdf])

relation: Alternative to: GPL8476 (Alternative CDF [huex10stv2_52_36n_0110-bin.cdf])

relation: Alternative to: GPL15236 (Alternative CDF)

relation: Alternative to: GPL15974 (Alternative CDF [CDF: Brainarray Version 9.0.1, HsEx10stv2_Hs_REFSEQ])

relation: Alternative to: GPL15981 (Alternative CDF)

relation: Alternative to: GPL16209 (Alternative CDF [HuEx_1_0_st_v2_core_na31_hg19_HB20110919_noSNPs])

relation: Alternative to: GPL16240 (Alternative CDF)

relation: Alternative to: GPL16329 (Alternative CDF)

relation: Alternative to: GPL17279 (Alternative CDF)

relation: Alternative to: GPL17426 (Alternative CDF [huex10stv2_67_020.cdf])

relation: Alternative to: GPL18627 (Alternative CDF)

relation: Alternative to: GPL18761 (Alternative CDF [HuEx_1_0_st_v2_na29.hg18.RefSeq-core])

relation: Alternative to: GPL19420 (Alternative CDF)

relation: Alternative to: GPL19859 (Alternative CDF [Brainarray Version 16.1.0, HsEx10stv2_Hs_REFSEQ])

relation: Alternative to: GPL20149 (Alternative CDF [GATExplorer: HuexonSpecificGeneProbes])

relation: Alternative to: GPL20982 (Alternative CDF [Brainarray v16.0.0, HuEx10stv2_Hs_ENTREZG])

relation: Alternative to: GPL22891 (Alternative CDF)

relation: Alternative to: GPL22995 (Alternative CDF)

relation: Alternative to: GPL25685 (Alternative CDF [Brainarray v19.0.0, huex10st_Hs_ENTREZG])

relation: Alternative to: GPL25734 ((Alternative CDF [Brainarray v18.0.0, huex10st_Hs_ENTREZG]))


title: BGISEQ-500 (Mus musculus)

status: Public on May 15 2017


title: Ion Torrent Proton (Mus musculus)

status: Public on May 02 2014


title: PromethION (Homo sapiens)

status: Public on Feb 07 2019


title: Illumina Genome Analyzer IIx (Homo sapiens)

status: Public on Sep 29 2010


title: Illumina NovaSeq 6000 (Arabidopsis thaliana)

status: Public on Feb 19 2019

organism: Arabidopsis thaliana


title: Illumina NextSeq 500 (Danio rerio)

status: Public on Aug 19 2015

organism: Danio rerio