title: Illumina HiSeq 2000 (Pongo pygmaeus)

status: Public on Mar 29 2019

last: GEO

country: USA

organism: Pongo pygmaeus

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 2500 (Fragaria vesca)

organism: Fragaria vesca


title: RayBio Mouse Cytokine Antibody Array G-Series 2000

status: Public on Mar 30 2019

city: Beijing

first: Cao

last: Ning

address: 49 Huayuan North Road

country: China

institute: Peking university

organism: Mus musculus

technology: antibody

description: Total cytokine antibody array was spotted on 3 spots for positive control, 3 spots for negative group

distribution: custom-commercial

manufacture_protocol: See manufacturer's website (https://www.raybiotech.com/files/manual/Antibody-Array/AAM-CYT-G2000.pdf)


title: Exiqon miRCURY LNA microRNA Array 7th generation (miRBase 19.0), Product# 208500-2,208510,208520-2, Lot#35029

status: Public on Nov 25 2020

city: Bucharest

first: Loredan

middle: Stefan

last: Niculescu

address: 8, B. P. Hasdeu Street

department: Lipidomics

country: Romania

institute: Institute of Cellular Biology and Pathology "Nicolae Simionescu"

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

technology: spotted oligonucleotide

description: Exiqon miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno (miRBase 19.0), Product number 208500,208501,208502,208510,208520,208521,208522, Lot number 35029

manufacture_protocol: See manufacturer's website: http://www.exiqon.com


title: NanoString nCounter human PanCancer Pathways Profiling Panel (Custom Codeset)

status: Public on May 08 2019

city: Minneapolis

first: Todd

middle: P

last: Knutson

state: MN

address: 117 Pleasant St SE

department: Minnesota Supercomputing Institute

institute: University of Minnesota

organism: Homo sapiens

technology: other

manufacturer: NanoString Technologies, Inc.; Seattle, WA


title: [E_coli_2] Affymetrix E. coli Genome 2.0 Array

status: Public on Nov 23 2005

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

organism: Escherichia coli

technology: in situ oligonucleotide

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The GeneChip® E. coli Genome 2.0 Array contains probe sets to detect transcripts from the K12 strain of E. coli and three pathogenic strains of E. coli. Using the new E. coli Genome 2.0 Array, researchers can gain a comprehensive view of three pathogenic forms of E. coli while continuing ongoing research projects with the K12 strain.

The GeneChip E. coli Genome 2.0 Array includes approximately 10,000 probe sets for all 20,366 genes present in four strains of E. coli. Due to the high degree of similarity between the E. coli strains, whenever possible, a single probe set is tiled to represent the equivalent ortholog in all four strains. The GeneChip E. coli Genome 2.0 Array tiles probe sets over the entire open reading frame (ORF) of E. coli, includes over 700 intergenic regions, probes for various antibiotic resistance markers, and incorporates additional control and reporter genes from the previous generation E. coli array.

distribution: commercial

manufacture_protocol: see manufacturer's web site


title: Nanostring nCounter mouse gene expression custom codeset N=45

city: Bethesda

first: Luca

last: Gattinoni

state: MD

address: 10 Center Drive

department: Center for Cancer Research

institute: National Cancer Institute

technology: spotted DNA/cDNA


title: Illumina HiSeq 2500 (Penicillium digitatum)

status: Public on Mar 28 2019

organism: Penicillium digitatum


title: Illumina HiSeq 2000 (Gammarus lacustris)

organism: Gammarus lacustris


title: Illumina HiSeq 4000 (Sebastes mystinus)

organism: Sebastes mystinus


title: Illumina HiSeq 2000 (Vitis)

organism: Vitis


title: Illumina HiSeq 4000 (Chlamydomonas reinhardtii)

organism: Chlamydomonas reinhardtii


title: GridION (Arabidopsis thaliana)

status: Public on Mar 27 2019

organism: Arabidopsis thaliana


title: Illumina HiSeq 4000 (Pan paniscus)

organism: Pan paniscus


title: Illumina HiSeq 2500 (Porphyromonas gingivalis 381)

status: Public on Mar 26 2019

organism: Porphyromonas gingivalis 381


title: 454 GS FLX Titanium (rat gut metagenome)

organism: rat gut metagenome


title: 454 GS FLX Titanium (mouse gut metagenome)

organism: mouse gut metagenome


title: HiSeq X Ten (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina NextSeq 500 (Coffea canephora)

organism: Coffea canephora


title: Agilent-070695 P. salmonis Univ Chile

city: Santiago

first: Rodrigo

last: Pulgar

state: Metropolitana

address: El Líbano 5524, Macul

department: INTA

country: Chile

institute: University of Chile

organism: Piscirickettsia salmonis

description:
Arrays of this design have barcodes that begin with 16070695 or 2570695.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: [Clariom_D_Human] Affymetrix Human Clariom D Assay [transcript (gene) version] [CDF: ClariomDHuman_Hs_ENTREZG, v21]

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: This is similar to GPL23126 but a custom CDF environment was used to extract data [Brainarray Version 21, ClariomDHuman]


title: HiSeq X Ten (Curvularia lunata)

status: Public on Mar 25 2019

organism: Curvularia lunata


title: miRCURY LNA™ Universal RT microRNA PCR, Ready-to-Use Human Panels I+II V4

city: Brno

first: Jaroslav

last: Juracek

address: Kamenice 5

country: Czech Republic

institute: CEITEC MU

technology: RT-PCR

manufacture_protocol: See Exiqon website http://www.exiqon.com/mirna-pcr


title: Illumina HiSeq 4000 (Juglans cathayensis)

organism: Juglans cathayensis


title: Illumina NextSeq 500 (Dictyostelium discoideum)

organism: Dictyostelium discoideum


title: Illumina HiSeq 2500 (Pseudomonas aeruginosa; Pseudomonas phage phiYY)

organism:
Pseudomonas aeruginosa
Pseudomonas phage phiYY


title: Ion Torrent Proton (Thioalkalivibrio jannaschii)

organism: Thioalkalivibrio jannaschii


title: MYcroarray Streptococcus pneumoniae D39 6X7K oligo array

status: Public on Mar 23 2019

city: Birmingham

first: Sang-Sang

last: Park

state: AL

address: 845 19th ST S

department: Medicine

institute: UAB

organism: Streptococcus pneumoniae D39

description: Streptococcus pneumoniae D39 has 1914 genes. We have designed 5265 probes surveying 1883 genes (or 98.4% of all genes) for this organism.


title: Ion Torrent Proton (Thioalkalivibrio thiocyanoxidans ARh2)

organism: Thioalkalivibrio thiocyanoxidans ARh2


title: Illumina NextSeq 500 (Escherichia coli BW25113)

organism: Escherichia coli BW25113


title: Illumina HiSeq 4000 (Hyriopsis cumingii)

status: Public on Mar 21 2019

organism: Sinohyriopsis cumingii


title: Illumina HiSeq 2000 (Homo sapiens; Human alphaherpesvirus 3)

status: Public on Mar 22 2019

organism:
Homo sapiens
Human alphaherpesvirus 3


title: MinION (Mumps rubulavirus)

status: Public on Mar 20 2019

organism: Mumps orthorubulavirus


title: Illumina HiSeq 4000 (Equus asinus)

organism: Equus asinus


title: Illumina NextSeq 500 (Solanum pennellii)

organism: Solanum pennellii


title: Illumina NextSeq 500 (Trichoderma reesei QM6a)

organism: Trichoderma reesei QM6a


title: Illumina HiSeq 3000 (Solanum pennellii)


title: mouse exonic evidence-based oligonucleotide (MEEBO) microarray [34288 probes]

status: Public on Mar 19 2019

city: Miami

first: Dmitry

last: Ivanov

state: FL

address: 1638 NW 10th Avenue

department: Ophthalmology

institute: University of Miami Miller School of Medicine

organism: Mus musculus

distribution: non-commercial


title: Illumina HiSeq 4000 (Dirofilaria repens)

organism: Dirofilaria repens


title: Exiqon miRCURY LNA Universal RT microRNA PCR Human Panel I+II

city: Salt

first: Judit

last: Bassols

address: C/ Dr. Castany s/n

country: Spain

institute: IDIBGI

organism: Homo sapiens

manufacture_protocol: See manufacturer's website.


title: Illumina NextSeq 500 (Asparagus officinalis)

status: Public on Mar 18 2019

organism: Asparagus officinalis


title: Illumina HiSeq 2000 (Glycyrrhiza uralensis)

organism: Glycyrrhiza uralensis


title: Illumina HiSeq 2500 (Carica papaya)

organism: Carica papaya


title: Illumina NextSeq 500 (Phaseolus vulgaris)

organism: Phaseolus vulgaris


title: Illumina NextSeq 500 (Setaria viridis)

organism: Setaria viridis


title: Illumina Equine SNP70 Bead Array (Neogen GGP Equine70k)

status: Public on Mar 16 2019

first: Hongying

last: Ma

address: yuanmingyuan road NO.2

institute: China agriculture university

organism: Equus caballus

technology: oligonucleotide beads


title: NanoString nCounter Human miRGE Expression Assay Custom CodeSet [lungmap]

city: Research Triangle Park

first: Ravi

last: Mathur

state: NC

address: 3040 East Cornwallis Road

institute: RTI International

description: miRGE is a custom codeset designed for this lungmap study.


title: Illumina HiSeq 1500 (Solanum lycopersicum x Solanum pennellii)


title: Illumina NextSeq 500 (Populus trichocarpa)

organism: Populus trichocarpa


title: Illumina HiSeq 1500 (Solanum lycopersicum)

organism: Solanum lycopersicum


title: Illumina MiSeq (Mycolicibacterium smegmatis)

organism: Mycolicibacterium smegmatis


title: Illumina HiSeq 2000 (Apis mellifera; Nosema ceranae)

status: Public on Mar 15 2019

organism:
Apis mellifera
Vairimorpha ceranae


title: Illumina HiSeq 2500 (Metschnikowia pulcherrima)

organism: Metschnikowia pulcherrima


title: Illumina Genome Analyzer (Streptococcus pneumoniae)

organism: Streptococcus pneumoniae


title: Illumina NextSeq 500 (Hordeum vulgare)

organism: Hordeum vulgare


title: Illumina NextSeq 500 (Homo sapiens; Human alphaherpesvirus 1 strain 17)

status: Public on Mar 14 2019

organism:
Homo sapiens
Human alphaherpesvirus 1 strain 17


title: Illumina Genome Analyzer IIx (Schistocerca gregaria)

organism: Schistocerca gregaria


title: MinION (Murine respirovirus)

organism: Respirovirus muris


title: Illumina HiSeq 4000 (Pyricularia oryzae)

status: Public on Mar 13 2019

organism: Pyricularia oryzae


title: Illumina HiSeq 2000 (Streptomyces clavuligerus ATCC 27064)

organism: Streptomyces clavuligerus


title: Illumina HiSeq 2500 (Escherichia coli K-12; Pseudomonas putida KT2440)

organism:
Escherichia coli K-12
Pseudomonas putida KT2440


title: Agilent-070006 Bacillus subtilis arrau (Bsubt168.sept2014)

city: Groningen

first: Anne

middle: de

last: Jong

address: Nijenborgh 7

department: Molecular Genetics

country: Netherlands

institute: university of Groningen

organism: Bacillus subtilis

description:
Arrays of this design have barcodes that begin with 16070006 or 2570006.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 4000 (Chenopodium quinoa)

organism: Chenopodium quinoa


title: Illumina HiSeq 3000 (Prunus persica)

status: Public on Mar 12 2019

organism: Prunus persica


title: Exiqon miRCURY LNA Human Serum/Plasma Focus miRNA PCR Panel (V4)

city: MURCIA

first: Raul

last: Teruel-Montoya

address: Ronda Garay s/n

department: Hematology and Medical Oncology Deparment

institute: Centro Regional de Hemodonación, Morales Meseguer University Hospital, IMIB-Arrixaca

organism: Homo sapiens

description:
PCR assay
miRCURY™ LNA™ miRNA RT Kit
Plasma/serum focus miRNAs PCR panel V4


title: Illumina NextSeq 500 (Spirodela polyrhiza)

organism: Spirodela polyrhiza


title: Illumina MiniSeq (Saccharomyces cerevisiae; Schizosaccharomyces pombe)

organism:
Schizosaccharomyces pombe
Saccharomyces cerevisiae


title: Illumina HiSeq 2500 (Trematomus bernacchii)

status: Public on Mar 11 2019

organism: Trematomus bernacchii


title: Illumina HiSeq 3000 (Macaca fascicularis; Plasmodium knowlesi)

organism:
Plasmodium knowlesi
Macaca fascicularis


title: Illumina HiSeq 2000 (Homo sapiens; Human alphaherpesvirus 1 strain 17)


title: Illumina Genome Analyzer IIx (Sulfolobus islandicus)

status: Public on Mar 08 2019

organism: Saccharolobus islandicus


title: Illumina Genome Analyzer IIx (Sulfolobus acidocaldarius)

organism: Sulfolobus acidocaldarius


title: Illumina NextSeq 500 (Tricholoma matsutake)

organism: Tricholoma matsutake


title: Illumina NextSeq 500 (Sulfolobus islandicus)


title: Illumina HiSeq 4000 (Phascolarctos cinereus)

organism: Phascolarctos cinereus


title: Illumina NextSeq 500 (Pinus densiflora; Tricholoma matsutake)

organism:
Tricholoma matsutake
Pinus densiflora


title: Illumina NextSeq 500 (Pinus densiflora)

organism: Pinus densiflora


title: Illumina HiSeq 2500 (Erwinia amylovora)

organism: Erwinia amylovora


title: Nimblegen 150402_UniProt_16mer_v2_PEP_PX1

city: Chicago

first: Yuanqing

last: Yan

state: IL

address: 303 E Superior Street

institute: Northwestern University

technology: spotted peptide or protein

manufacture_protocol: Nimblegen


title: Illumina HiSeq 2500 (Entamoeba histolytica HM-1:IMSS; Homo sapiens)

last: GEO

organism:
Homo sapiens
Entamoeba histolytica HM-1:IMSS


title: Illumina HiSeq 3000 (Staphylococcus aureus)

organism: Staphylococcus aureus


title: Illumina HiSeq 2000 (Pistacia chinensis)

status: Public on Mar 07 2019

organism: Pistacia chinensis


title: Illumina HiSeq 2000 (Annulohypoxylon stygium; Tremella fuciformis)

status: Public on Mar 06 2019

organism:
Tremella fuciformis
Annulohypoxylon stygium


title: Illumina HiSeq 2000 (Annulohypoxylon stygium)

organism: Annulohypoxylon stygium


title: Illumina HiSeq 2500 (Lactobacillus reuteri)

organism: Limosilactobacillus reuteri


title: Illumina HiSeq 2500 (Bacillus cereus)

organism: Bacillus cereus


title: Illumina NextSeq 500 (Anolis sagrei)

organism: Anolis sagrei


title: IIMCB/LN zebrafish Calcium Toolkit PCR Array

status: Public on Mar 05 2019

city: Warsaw

first: Iga

last: Wasilewska

address: 4 Ks. Trojdena Street

country: Poland

institute: International Institute of Molecular and Cell Biology

organism: Danio rerio

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Illumina NovaSeq 6000 (Phascolarctos cinereus)


title: Illumina NovaSeq 6000 (Homo sapiens; Macaca mulatta; Pan paniscus; Pan troglodytes)

status: Public on Mar 04 2019

organism:
Macaca mulatta
Pan paniscus
Pan troglodytes
Homo sapiens


title: HiSeq X Ten (Mycolicibacterium smegmatis)

organism: Mycolicibacterium smegmatis


title: Illumina MiSeq (Bos taurus; Mus musculus)

status: Public on Mar 01 2019

organism:
Bos taurus
Mus musculus


title: Illumina NextSeq 500 (Sulfolobus acidocaldarius)

organism: Sulfolobus acidocaldarius


title: Exiqon miRCURY LNA microRNA array, 7th generation [miRBase v18, condensed Probe_ID version]

status: Public on Mar 03 2019

city: Hangzhou

first: Xin

last: Huang

state: Zhejiang

address: 88 Jiefang Road

institute: Zhejiang University

organism: Homo sapiens


title: Agilent-067797 Svacuolatus_Array_Probes2 [Feature number version]

city: Leipzig

first: Stefan

last: Scholz

address: Permoserstr. 15

department: Bioanalytical Ecotoxicology

country: Germany

institute: Helmholtz Centre for Environmental Research

organism: Scenedesmus vacuolatus

description:
Arrays of this design have barcodes that begin with 16067797 or 2567797.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Custom NanoString nCounter panel for the NanoCRCAssigner assay

city: Sutton

first: Anguraj

last: Sadanandam

state: Surrey

address: 15 Cotswold Road

country: United Kingdom

institute: Institute of Cancer Research

manufacture_protocol: Consult manufacturer's documentation


title: BGISEQ-500 (Sus scrofa)

organism: Sus scrofa


title: Illumina HiSeq 2500 (Thermoplasma acidophilum)

organism: Thermoplasma acidophilum


title: Illumina HiSeq 4000 (Oreochromis niloticus)

organism: Oreochromis niloticus


title: Illumina HiSeq 4000 (Enterobacter cloacae subsp. cloacae ATCC 13047)


title: 2005-09-01_B_thetaiotamicron_24mer

city: Aberdeen

first: Imke

last: Mulder

address: Cornhill Road

institute: 4D Pharma Research Ltd

organism: Bacteroides thetaiotaomicron VPI-5482

description:
1:2 catalog design for Bacteroides thetaiotaomicron (NC_004663) and associated plasmid with 20 pp/gene.  Each probe replicated 2x on chip.  Design includes random GC probes.
The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features.  The .ndf and .ngd files are linked below as supplementary files.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Illumina HiSeq 2000 (Populus nigra)

status: Public on Jul 18 2018

organism: Populus nigra


title: NanoString custom immune gene set

city: Rockville

first: Tongwu

last: Zhang

address: 9609 Medical Center Drive

department: Division of Cancer Epidemiology & Genetics

institute: National Cancer Institute

organism: Mus musculus


title: NimbleGen GeoChip v.4.2

city: Biejing

first: Jingmin

last: Cheng

address: NO. 30 Shuangqing Road, Haidian District

department: School of Environment

institute: Tsinghua University

organism: Fungi

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Illumina HiSeq 4000 (Cryptococcus neoformans var. grubii)

organism: Cryptococcus neoformans


title: [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: hugene10st_Hs_ENTREZG, Brainarray version 21]

status: Public on Jul 13 2017

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: This is identical to GPL6244  but a custom CDF environment was used to extract data [Brainarray Version 21, hugene10st_21 ]. CDF and other files can be downloaded at web link below.

manufacture_protocol: See manufacturer's web site


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (custom CDF)

status: Public on Feb 20 2014

first: Margaret

middle: C

last: Cam

institute: NIH

description: Alternative CDF's were generated by masking probes which showed non-specific hybridization towards mouse in the human arrays and vice versa.  Briefly, using raw intensity signals from cel files, individual probes were filtered if they met the following criteria: the net intensity (PM-MM) of each probe pair from the cross-reactive species was less than 10 and greater than 50% of the corresponding signal from human tumor core.  Alternatively, to detect cross-reactive human signal on the mouse microarrays, mouse chips were hybridized with pure human cell line RNA and the corresponding same criteria were applied. The remaining probes were grouped into their original probe sets and those that had at least 4 remaining probes were retained in the new chip definition file (cdf). This resulted in alternative cdf’s containing 26,954 probe sets for the HG-U133 plus2 array and 21,675 probe sets for the Mouse430_2 array.


title: MinION (Arabidopsis thaliana)

organism: Arabidopsis thaliana


title: [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array (custom CDF)


title: Illumina HiSeq 2500 (Physcomitrella patens)

status: Public on Oct 18 2013

organism: Physcomitrium patens


title: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. MG1655)

status: Public on Dec 14 2011


title: [BrasEx1S_exon] Affymetrix Brassica Exon 1.0 ST

status: Public on Sep 09 2010

city: Loughborough

last: Nottingham Arabidopsis Stock Centre (NASC)

address: Sutton Bonington Campus

department: School of Biosciences, University of Nottingham

organism: Brassica rapa

description: The Brassica exon array has one set of exons (not core, extended, and full).

manufacture_protocol: See manufacturer's web site (www.affymetrix.com).


title: VUmc/Illumina Sentrix MouseRef8 v1.1

status: Public on Dec 01 2009

city: Amsterdam

first: Anton

middle: J

last: Horrevoets

address: van der Boechorststraat 7

department: Molecular Cell Biology

institute: VU University Medical Center

description:
Illumina Sentrix MouseRef-8
ServiceXS Beadstudio output list
Similar to GPL6103

first: Paolo

last: Madeddu


title: Illumina NextSeq 500 (Solanum lycopersicum)

status: Public on Apr 22 2016

organism: Solanum lycopersicum


title: Agilent-040796 X-HR-v2

city: Pittsburgh

first: Svetlana

middle: A

last: Yatsenko

state: PA

address: 300 Halket St

institute: University of Pittsburgh

description:
Arrays of this design have barcodes that begin with 16040796 or 2540796.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: [HG-U219] Affymetrix Human Genome U219 Array

status: Public on May 31 2011

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

relation: Alternative to: GPL15803 ([Alternative ENSG Brainarray CDF Version 14.1.0])

relation: Alternative to: GPL18189 (Alternative CDF [HGU219_Hs_ENTREZG_15.1.0])

relation: Alternative to: GPL19211 (Alternative CDF [HGU219_Hs_ENSG_17.1.0])

relation: Alternative to: GPL19833 (Alternative CDF [HGU219_Hs_ENSG_18.0.0])

relation: Alternative to: GPL20650 (Alternative CDF [HG-U219_Hs_ENTREZG_18])

relation: Alternative to: GPL21464 (Alternative CDF [HGU219_Hs_ENTREZG_19.0.0])

relation: Alternative to: GPL24030 (Alternative CDF [HGU219_Hs_ENTREZG_20.0.0])

relation: Alternative to: GPL24052 (Alternative CDF)


title: Illumina MiSeq (Methanothermus fervidus)

organism: Methanothermus fervidus


title: Homo sapiens 4.8K 02-01 amplified cDNA

status: Public on May 09 2005

city: São Paulo

first: Renato

middle: David

last: Puga

state: São Paulo

address: Dr Ovidio Pires de Campos,785

department: Instituto de Psiquiatria

country: Brazil

institute: Universidade de São Paulo

description:
Spotted cDNA Orestes clones. This set includes 4608 orestes in build 175 of the human UniGene database.
Keywords = spotted, cDNA

first: Alex

last: Fiorini


title: NextSeq 550 (Saccharomyces cerevisiae)

status: Public on Mar 14 2019

last: GEO

organism: Saccharomyces cerevisiae


title: Illumina HiSeq 2000 (Saccharomyces cerevisiae)

status: Public on Jul 05 2011


title: HiSeq X Ten (Homo sapiens)

status: Public on Aug 11 2015


title: Illumina HiSeq 2500 (Schizosaccharomyces pombe)

status: Public on May 31 2013

organism: Schizosaccharomyces pombe


title: HiSeq X Ten (Mus musculus)

status: Public on Dec 22 2015


title: Illumina HiSeq 2500 (Saccharomyces cerevisiae)

status: Public on Jun 26 2013


title: Illumina NextSeq 500 (Saccharomyces cerevisiae)

status: Public on Feb 09 2015


title: Illumina NextSeq 500 (Drosophila melanogaster)

status: Public on Aug 27 2014

organism: Drosophila melanogaster


title: Illumina HiSeq 4000 (Mus musculus)

status: Public on Nov 04 2015


title: Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)

status: Public on May 13 2011

city: San Diego

last: Illumina Inc.

address: 9885 Towne Centre Drive

institute: Illumina Inc.

organism: Homo sapiens

description:
1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm:

1.1:

41636384,NEGATIVE,-99,Negative 604

1.2:

41636384,RESTORATION,Green,Restore

manufacture_protocol: See manufacturer's website


title: Illumina NovaSeq 6000 (Sus scrofa)

status: Public on Mar 27 2019

organism: Sus scrofa


title: [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]

status: Public on Dec 05 2007

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 07, 2012: annotation table updated with netaffx build 32
July 01, 2016: annotation table updated with netaffx build 35

relation: Alternative to: GPL9525 (Alternative CDF [affy9939alt])

relation: Alternative to: GPL10528 (Alternative CDF  [MoGene10stv1_Mm_ENSG])

relation: Alternative to: GPL10655 ( v1.na30.1.mm9.probeset)

relation: Alternative to: GPL10740 (probe set (exon) version)

relation: Alternative to: GPL10742 (Alternative CDF  [ MoGene10stv1_Mm_ENST])

relation: Alternative to: GPL11078 (Alternative CDF [MoGene10stv1_Mm_ENTREZG_13])

relation: Alternative to: GPL11204 (Alternative CDF [ MoGene10stv1_Mm_ENST])

relation: Alternative to: GPL13455 (Alternative CDF [Brainarray MoGene10stv1_Mm_REFSEQ version 14])

relation: Alternative to: GPL13730 (Alternative CDF [ MoGene10stv1_Mm_ENTREZG_14.1.0])

relation: Alternative to: GPL14866 (Alternative CDF [MoGene10stv1_Mm_ENSG version 14])

relation: Alternative to: GPL15733 (Alternative CDF [ MoGene10stv1_Mm_ENTREZG_12.1.0])

relation: Alternative to: GPL15912 (Alternative CDF [ MoGene10stv1_Mm_REFSEQ_13.0.0])

relation: Alternative to: GPL17103 (Alternative CDF [MoGene10stv1_Mm_ENSG version 15])

relation: Alternative to: GPL17777 (Alternative CDF [mogene10st_Mm_ENTREZG_17.1.0])

relation: Alternative to: GPL17940 (mogene10st_annotation.csv)

relation: Alternative to: GPL17984 (transcript (gene) version, ENSG 60)

relation: Alternative to: GPL18535 (Alternative CDF [MoGene10stv1_Mm_ENTREZG_15.1.0])

relation: Alternative to: GPL19103 (Alternative CDF [mogene10st_Mm_ENTREZG_18.0.0])

relation: Alternative to: GPL19192 (Alternative CDF [GATExplorer_Ensembl v57])

relation: Alternative to: GPL19317 (Alternative CDF [ MoGene10stv1_Mm_ENSG v.18.0.0])

relation: Alternative to: GPL19485 (Alternative CDF [MoGene10stv1_Mm_ENTREZG_16.0.0])

relation: Alternative to: GPL19972 (Alternative CDF [MoGene10stv1_Mm_REFSEQ version 18])

relation: Alternative to: GPL20023 (Alternative CDF [mogene10stv1_75_030genes])

relation: Alternative to: GPL20205 ([MoGene10stv1_Mm_REFSEQ_14.1.0])

relation: Alternative to: GPL20894 (Alternative CDF [MoGene10stv1_Mm_ENSG v.19.0.0])

relation: Alternative to: GPL21783 (Alternative CDF[MoGene10st_Mm_ENTREZG_17.0.0])

relation: Alternative to: GPL26217 (Alternative CDF [mogene10st_Mm_ENTREZG_22.0.0])


title: Illumina HiSeq 2500 (Drosophila melanogaster)

status: Public on Jun 11 2013


title: Illumina Genome Analyzer (Mus musculus)

status: Public on Sep 11 2009


title: Ion Torrent Proton (Homo sapiens)

status: Public on Jun 17 2013


title: Illumina HiSeq 2000 (Mus musculus)

status: Public on Feb 02 2011


title: Illumina HiSeq 4000 (Homo sapiens)

status: Public on Jun 09 2015


title: Illumina HiSeq 2000 (Homo sapiens)

status: Public on Nov 02 2010


title: Illumina HiSeq 2500 (Mus musculus)

status: Public on Apr 16 2013


title: Illumina NextSeq 500 (Mus musculus)

status: Public on Aug 07 2014


title: Illumina HiSeq 2500 (Homo sapiens)

status: Public on Mar 14 2013


title: Illumina NextSeq 500 (Homo sapiens)

status: Public on Apr 15 2014


title: Illumina NovaSeq 6000 (Mus musculus)

status: Public on Nov 08 2017