title: Human NanoString panel

status: Public on Dec 10 2019

city: Chapel Hill

first: Xianlu

middle: Laura

last: Peng

state: NC

address: 450 West Dr.

country: USA

institute: The University of North Carolina at Chapel Hill

organism: Homo sapiens

technology: other

distribution: custom-commercial

manufacture_protocol: see manufacturer's website


title: nCounter PanCancer Progression panel

status: Public on May 31 2019

city: Glasgow

first: Chiara

last: Braconi

address: Switchback road

department: Wolfson Wohl Cancer Research Centre

country: United Kingdom

institute: University of Glasgow

manufacture_protocol: See manufacturer's web site


title: PacBio RS II (Oxytricha trifallax)

last: GEO

organism: Oxytricha trifallax

technology: high-throughput sequencing

distribution: virtual


title: CustomArray Amur sturgeon 12K miRNA array

status: Public on May 29 2019

city: Guangzhou

first: Linmiao

last: Li

address: Xin-Gang-Xi-Lu 105

country: China

institute: Guangdong Institute of Applied Biological Resources

organism: Acipenser schrenckii

technology: in situ oligonucleotide


title: Illumina HiSeq 4000 (Talaromyces pinophilus)

status: Public on May 28 2019

organism: Talaromyces pinophilus


title: Illumina NextSeq 500 (Sclerotium cepivorum)

status: Public on May 24 2019

organism: Stromatinia cepivora


title: [Clariom_S_Human] Affymetrix Clariom S Human array [ClariomSHuman_Hs_ENSG_22]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: See manufacturer's website


title: Agilent-070465_IRHS_AryANE_v2

status: Public on May 30 2019

city: BEAUCOUZE

first: Sandra

last: Pelletier

address: 42, rue Georges Morel - BP 60057

country: France

institute: INRA

organism: Malus domestica

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NextSeq 500 (Seminavis robusta)

status: Public on May 23 2019

organism: Seminavis robusta


title: Illumina HiSeq 2000 (Capsicum annuum; Solanum lycopersicum)

organism:
Capsicum annuum
Solanum lycopersicum


title: HiSeq X Ten (Agaricus blazei)

organism: Agaricus blazei


title: Illumina HiSeq 2500 (Erysiphe pisi; Pisum sativum)

status: Public on May 20 2019

organism:
Lathyrus oleraceus
Erysiphe pisi


title: Illumina HiSeq 2500 (Enterococcus faecalis OG1RF)

organism: Enterococcus faecalis OG1RF


title: Illumina HiSeq 2500 (Verticillium dahliae)

organism: Verticillium dahliae


title: Illumina MiSeq (Homo sapiens; Human immunodeficiency virus 1)

organism:
Homo sapiens
Human immunodeficiency virus 1


title: Illumina HiSeq 4000 (Aedes aegypti)

organism: Aedes aegypti


title: Taqman Low Density Array For Glioma Subtyping

status: Public on May 21 2019

city: Beijing

first: Fan

last: Xiaolong

address: No.19,Waida Jie,Xinjie Kou, Haiding District

institute: Beijing Normal University

technology: RT-PCR

description: PCR assay


title: MICROMAX™ human cDNA Microarray System

status: Public on May 18 2019

city: Newark

first: Pranela

last: Rameshwar

state: NJ

address: 185 South Orange Avenue

department: Medicine

institute: Rutgers NJ Medical School

technology: spotted oligonucleotide

description: Catalog number MPS401ARRAY, Part number MPS401, Lot/serial number is AB205.

distribution: commercial

manufacture_protocol: This product was made using the Polymerase Chain Reaction (PCR) Process which is covered by patents owned by Roche Molecular Systems, Inc. and F. Hoffman-La Roche Ltd (Roche). No license to use the PCR Process is conveyed expressly or by implication to the purchaser by the purchase of this product. Information on purchasing licenses to practice the PCR Process may be obtained by contacting the Director of Licensing at Roche Molecular Systems, Inc., 1145 Atlantic Avenue, Alameda, California 94501.


title: Illumina MiSeq (Sinorhizobium meliloti)

status: Public on May 17 2019

organism: Sinorhizobium meliloti


title: Illumina HiSeq 2000 (Camelus dromedarius)

status: Public on May 16 2019

organism: Camelus dromedarius


title: Illumina HiSeq 2500 (Homo sapiens; Human immunodeficiency virus 1)


title: Ion Torrent Proton (Brucella melitensis)

organism: Brucella melitensis


title: Illumina NextSeq 500 (Escherichia coli UTI89)

organism: Escherichia coli UTI89


title: Illumina HiSeq 2500 (Dionaea muscipula)

organism: Dionaea muscipula


title: (marine metagenome)

status: Public on May 15 2019

organism: marine metagenome


title: Illumina NextSeq 500 (Lasiodiplodia theobromae)

organism: Lasiodiplodia theobromae


title: Illumina NextSeq 500 (Lasiodiplodia hormozganensis)

organism: Lasiodiplodia hormozganensis


title: Illumina NextSeq 500 (Emiliania huxleyi CCMP1516)

organism: Emiliania huxleyi CCMP1516


title: Ion Torrent S5 (Boswellia sacra)

status: Public on May 14 2019

organism: Boswellia sacra


title: Mouse MM1200 OpArray [pMouse_combIds_2007Sept.GAL; index ID version]

city: Houston

first: Eylem

last: Aydogdu

state: TX

address: 3605 Cullen Blvd SERC Bldg. #545

institute: University of Houston

organism: Mus musculus


title: BGISEQ-500 (Megalobrama amblycephala)

status: Public on May 13 2019

organism: Megalobrama amblycephala


title: Illumina HiSeq 4000 (Peromyscus maniculatus)

organism: Peromyscus maniculatus


title: Illumina HiSeq 2000 (Agrobacterium sp. CGMCC 11546)

organism: Agrobacterium sp. CGMCC 11546


title: BGISEQ-500 (Bombus terrestris)

status: Public on May 12 2019

organism: Bombus terrestris


title: Illumina NextSeq 500 (Thalassiosira pseudonana CCMP1335)

status: Public on May 10 2019

organism: Thalassiosira pseudonana CCMP1335


title: Illumina HiSeq 3000 (Fusarium graminearum)

organism: Fusarium graminearum


title: Illumina NextSeq 500 (Pimelobacter simplex)

organism: Pimelobacter simplex


title: Illumina HiSeq 2500 (Valsa mali)

status: Public on May 09 2019

organism: Cytospora mali


title: Illumina HiSeq 2500 (Chaetomium globosum CBS 148.51)

organism: Chaetomium globosum CBS 148.51


title: Illumina HiSeq 4000 (Penicillium oxalicum)

organism: Penicillium oxalicum


title: Illumina HiSeq 2500 (Apis laboriosa)

organism: Apis laboriosa


title: Illumina HiSeq 2500 (Apis dorsata)

organism: Apis dorsata


title: Illumina HiSeq 4000 (Komagataella phaffii)

organism: Komagataella phaffii


title: nCounter Max Analysis System (GEN1)

city: Columbus

first: Hatice Gulcin

last: Ozer

state: OH

address: 1800 Cannon Dr

department: Biomedical Informatics

institute: The Ohio State University

organism: Homo sapiens

manufacture_protocol: nCounter Digital Analyzer protocol


title: Illumina NovaSeq 6000 (Dictyostelium discoideum)

organism: Dictyostelium discoideum


title: HiSeq X Ten (Oryza sativa Indica Group)

organism: Oryza sativa Indica Group


title: USC/ACUIGEN-Ruditapes philippinarum-8 × 15 k-designID: 072098

city: LUGO

first: Belen

middle: G

last: Pardo

state: LUGO

address: Avda. Carballo Calero s/n

department: Zoology, Genetics and Physical Anthropology

country: Spain

institute: University of Santiago de Compostela

organism: Ruditapes philippinarum

distribution: non-commercial

manufacturer: Acuigen group, Dpto de Zoología, Genética y Antropología Física,Facultad Veterinaria, Campus de Lugo, Universidade de Santiago de Compostela

manufacture_protocol: A total of  14,615 oligo-probes corresponding to 11,288 different Manila clam transcripts, 10,987 of them (97.9%) annotated. A total of 9,094 oligo-probes came from the HS-transcriptome, while 5,521 oligo-probes were from MR- and ML-transcriptomes. Among the HS-transcriptome probes, 5,770 corresponded to consistently annotated transcripts in the NCBI nr protein database and 236 DE to non-annotated transcripts, but showing a high DE between infected and control clams  (Hasanuzzamann et al., 2017). This latter set consisted in 472 probes since forward and reverse oligo-probes were necessary. Finally, 2,852 transcripts annotated to well-known proteins were replicated. Regarding the other two reported transcriptomes, a total of 3,627 oligo-probes corresponded to the MR-transcriptome (584 of them associated with immune response), 1,605 to the ML-transcriptome, and 289 were common to both MR and ML transcriptomes.The probes were synthesized in a random layout using the Agilent methodology.


title: Illumina HiSeq 4000 ([Haemophilus] ducreyi)

status: Public on May 08 2019

organism: [Haemophilus] ducreyi


title: [PhyloChip] Affymetrix G2 PhyloChip 2012 Greengenes taxonomy

city: Northfield

first: Heather

middle: Elizabeth

last: Driscoll

state: VT

address: 158 Harmon Drive

department: Biology

institute: Norwich University

organism:
Bacteria
Archaea

description:
Oligonucleotide sequences © 2013 Second Genome, Inc. All rights reserved.

The supplementary  file at the foot of this record includes probe sequences.

manufacture_protocol: See manufacturer's website (www.affymetrix.com).


title: Illumina HiSeq 4000 ([Haemophilus] ducreyi; Homo sapiens)

organism:
[Haemophilus] ducreyi
Homo sapiens


title: HiSeq X Ten (synthetic construct)

status: Public on May 22 2019

organism: synthetic construct


title: Illumina HiSeq 2500 (Staphylococcus aureus subsp. aureus USA300)


title: AB 5500xl Genetic Analyzer (Fusarium graminearum)


title: [Clariom_S_Mouse] Affymetrix Clariom S Assay, Mouse [CDF: Brainarray ClariomSMouse_Mm_ENTREZG_22.0.0]

first: Kathy

last: Phillippy

address: 45 Center Drive

institute: NIH

organism: Mus musculus

description: The custom chip definition file from Brainarray Version 22.0  based on Entrez ID.

manufacture_protocol: See manufacturer's web site (www.affymetrix.com).


title: NimbleGen Mouse CGH 3x1.4M Whole-Genome Tiling Array (Build MM9) [110922_MM9_WG_tiling_TG_CGH UX3]

city: Ann Arbor

first: Thomas

middle: E.

last: Wilson

state: MI

address: 2065 BSRB, 109 Zina Pitcher

department: Department of Pathology

institute: University of Michigan

description: mm9, NCBI Build 37

manufacture_protocol: NimbleGen proprietary; see manufacturer's web site www.nimblegen.com


title: Illumina NextSeq 500 (Callithrix jacchus)

organism: Callithrix jacchus


title: Duke/RG_uPBM_4x44k_with_GR_probes

city: Durham

first: Raluca

last: Gordan

address: 101 Science Dr, CIEMAS 2179

department: Center for Genomic and Computational Biology

institute: Duke University

manufacture_protocol: In situ oligosynthesized array with synthetic sequences that cover all possible 10-mers, plus custom sequences containing DNA binding site for human GR protein


title: Duke/RG_uPBM_4x44k_with_Mat2_probes

manufacture_protocol: In situ oligosynthesized array with synthetic sequences that cover all possible 10-mers, plus custom sequences containing DNA binding site for yeast Mat2 protein


title: Duke/RG_uPBM_6x80k_with_crystal_structure_probes

manufacture_protocol: In situ oligosynthesized array with synthetic sequences that cover all possible 10-mers, plus custom sequences containing protein-DNA binding sites reported in X-ray crystal structures


title: Illumina HiSeq 2500 (Colossoma macropomum)

organism: Colossoma macropomum


title: Illumina HiSeq 2500 (Mycobacterium tuberculosis variant bovis)


title: Illumina HiSeq 2000 (Human immunodeficiency virus)

organism: Human immunodeficiency virus


title: Agilent-031412 GT_EA444_PigCGH_Microarray 031333

status: Public on May 06 2019

city: Saarbrucken

first: Sonja

middle: M.

last: Kessler

address: Campus C2 3

country: Germany

institute: Saarland University

organism: Sus scrofa

description: This is a CGH design for Pig.


title: Illumina HiSeq 2000 (Fusobacterium nucleatum)

status: Public on May 04 2019

organism: Fusobacterium nucleatum


title: Illumina HiSeq 2000 (Saccharum hybrid cultivar)

status: Public on May 07 2019

organism: Saccharum hybrid cultivar


title: NanoString nCounter Human gene expression custom codeset

status: Public on May 03 2019

city: Edinburgh

first: Carlos

last: Martinez-Perez

address: Western General Hospital, Crewe Road South

department: Institute of Genetics and Molecular Medicine

institute: The University of Edinburgh

manufacture_protocol: See manufacturers website (http://www.nanostring.com)


title: PacBio RS II (Bacillus subtilis)

organism: Bacillus subtilis


title: PacBio RS II (Bacillus subtilis PY79)

organism: Bacillus subtilis PY79


title: Agilent-062842 Anabaena PCC7120_AGIS_JM091213

city: Freiburg

first: Jens

last: Georg

address: Schänzlestr. 1

institute: University of Freiburg

organism: Nostoc sp. PCC 7120 = FACHB-418

description:
Anabaena PCC7120 array for all features

Arrays of this design have barcodes that begin with 16062842 or 2562842.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Ion Torrent Proton (Aeromonas dhakensis)

organism: Aeromonas dhakensis


title: Illumina HiSeq 2000 (HIV-1 vector pNL4-3; Homo sapiens)

organism:
Homo sapiens
HIV-1 vector pNL4-3


title: Illumina HiSeq 4000 (Brucella ovis)

organism: Brucella ovis


title: Illumina NextSeq 500 (Simmondsia chinensis)

status: Public on May 02 2019

organism: Simmondsia chinensis


title: Illumina HiSeq 3000 (Rattus rattus)

organism: Rattus rattus


title: Illumina HiSeq 4000 (Boehmeria nivea)

status: Public on May 01 2019

organism: Boehmeria nivea


title: GeoChip 4.2

city: beijing

first: zhao

last: mengxin

address: Haidian District Zhongguancun Street

institute: tsinghua university

organism: uncultured soil microorganism

manufacture_protocol: see website


title: Illumina HiSeq 2500 (Escherichia coli K-12; Plasmid RP4; Pseudomonas putida KT2440)

last: GEO

organism:
Plasmid RP4
Escherichia coli K-12
Pseudomonas putida KT2440


title: Fusarium graminearum 4x44k

status: Public on Feb 01 2011

city: Ottawa

first: Linda

middle: J

last: Harris

state: Ontario

address: 960 Carling Ave.

department: Eastern Cereal & Oilseed Research Centre

country: Canada

institute: Agriculture & Agri-Food Canada (AAFC)

organism: Fusarium graminearum

manufacture_protocol: SurePrint technology: Custom commercial microarrays are manufactured using a non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the full-length oligonucleotide. Precise quantities are reproducibly deposited “on the fly” and is achieved without stopping, to make contact with the slide surface and without introducing surface-contact feature anomalies.


title: Agilent-049081 Chicken (Gallus gallus) Gene Expression 4x44K Array (AMADID: 049081)

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Gallus gallus

description: designed by Genotypic Technology Private Limited


title: nCounter PanCancer Progression panel

city: Erlangen

first: Regine

last: Schneider-Stock

state: Bavaria

address: Universitaetsstrasse 22

institute: University Hospital Erlangen

organism: Homo sapiens


title: Fluidigm Custom PCR assay for tumor-infiltrating lymphocytes [88 genes]

city: Memphis

first: Jeremy

middle: Chase

last: Crawford

state: TN

address: MS 221, 262 Danny Thomas Place

department: Department of Host-Microbe Interactions

institute: St. Jude Children's Research Hospital

description: multiplex qPCR assay


title: Agilent-050340 Custom Rat miRNA Microarray

city: Hwasun

first: Nakwon

last: Choe

state: Seoyang-ro 322

address: Baekseo-ro 160

department: Pharmacology

country: South Korea

institute: Chonnam Univ. Med. Sch.

organism: Rattus norvegicus


title: Illumina HiSeq 2000 (Rhodospirillum rubrum)

organism: Rhodospirillum rubrum


title: Illumina Human Exome Asian BeadChip  (Exome_Asian_30K_ExomePlus_15031624_A)

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

technology: oligonucleotide beads

description: Descriptor File Name: Exome_Asian_30K_ExomePlus_15031624_A.csv


title: PromethION (Mus musculus)

organism: Mus musculus


title: [Axiom_GW_GT_Chicken] 600K Affymetrix Axiom® HD Genotyping Array

status: Public on Jul 21 2017

city: Beijing

first: Hao

last: Bai

address: Yuanmingyuan West Road No. 2, Haidian District

institute: Institute of Animal Science, Chinese Academy of Agricultural Sciences

description:
#%chip_type=Axiom_GW_GT_Chicken
#%genome-species=Gallus gallus
#%genome-version=galGal5

manufacture_protocol: see manufacturer's web site


title: Illumina NovaSeq 6000 (Caenorhabditis elegans)

organism: Caenorhabditis elegans