title: Agilent-079414 Rhodococcus jostii RHA1_Gordonia sp. KTR9 plasmid pGKT2 8x15k GXP Array [Probe Name version]

status: Public on Jul 31 2019

city: Vicksburg

first: Karl

last: Indest

address: 3909 Halls Ferry Road

country: USA

institute: US Army Engineer Research and Development Center

organism:
Rhodococcus jostii RHA1
Gordonia sp. KTR9

technology: in situ oligonucleotide

description:
Gene Expression array for Rhodococcus jostii RHA1 &Gordonia sp. KTR9 plasmid pGKT2 8x15k GXP Array

Arrays of this design have barcodes that begin with 16079414 or 2579414.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-080285 Gordonia sp. KTR9 Whole GXP 8x15k Array [Probe Name version]

organism: Gordonia sp. KTR9

description:
Gordonia sp. KTR9 Whole GXP 8x15k Array which contain one genome and 3 plasmid genes.

Arrays of this design have barcodes that begin with 16080285 or 2580285.


title: Human Immunology Code Set (NS_Immunology_C2328)

status: Public on Jan 27 2020

city: RTP

first: NIEHS

last: Microarray Core

state: NC

address: 111 T.W. Alexander Drive

department: DIR

institute: NIEHS

organism: Homo sapiens

technology: other

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Agilent Lactobacillus plantarum WCFS1 Gene Expression 8x60k Array (AMADID: 067475) by Genotypic Technology Private Ltd

status: Public on Jul 30 2019

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Lactiplantibacillus plantarum WCFS1


title: Illumina Genome Analyzer IIx (Homo sapiens; Trichophyton rubrum)

last: GEO

organism:
Trichophyton rubrum
Homo sapiens

technology: high-throughput sequencing

distribution: virtual


title: Illumina MiSeq (Vibrio vulnificus)

organism: Vibrio vulnificus


title: Agilent-085042 CGH_ENDO_GMO_170818 G4427A

city: Shizuoka

first: Hiroshi

last: Fujii

state: Shizuoka

address: 485-6 Okitsunakacho, Shimizu

department: Division of Citrus Research

country: Japan

institute: Institute of Fruit Tree Science, NARO

organism: Citrus trifoliata

description: CGH_ENDO_GMO_170818 CTV Vector


title: Illumina HiSeq 2000 (Cynodon dactylon)

organism: Cynodon dactylon


title: BGISEQ-500 (Laribacter hongkongensis)

status: Public on Jul 29 2019

organism: Laribacter hongkongensis


title: Illumina HiSeq 2000 (Homo sapiens; Trichophyton rubrum)


title: Agilent-085763 Pfalciparum15KArray_Sept18

status: Public on Jun 09 2020

city: Barcelona

first: Oriol

last: Llorà-Batlle

address: Carrer Rosselló 153, 1st floor

country: Spain

institute: ISGlobal

organism: Plasmodium falciparum

description:
Based on designs 037237 (Llinas lab) and 084561 (Cortes lab), with some new probes added by Cortes lab.

Arrays of this design have barcodes that begin with 16085763 or 2585763.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: commercial


title: Illumina HiSeq 2500 (Bombina orientalis)

organism: Bombina orientalis


title: Agilent-079303 ArrayXS-Mouse_V2 079025 (condensed version)

status: Public on Nov 07 2019

city: Kiel

first: Dennis

last: Schade

address: Gutenbergstr. 76

department: Pharmaceutical and Medicinal Chemistry

country: Germany

institute: Christian-Albrechts-University Kiel

organism: Mus musculus


title: Illumina HiSeq 2500 (Emberiza bruniceps)

status: Public on Jul 28 2019

organism: Emberiza bruniceps


title: Illumina HiSeq 2500 (Vibrio cholerae O1 biovar El Tor str. N16961)


title: ORB miRBase 19 Multispecies MicroRNA Microarray

status: Public on Jul 26 2019

city: Morgatown

first: Nancy

middle: Lan

last: Guo

state: WV

address: 2816 Health Sciences Center

department: Occupational and Environmental Health Sciences

institute: West Virginia University

organism:
Macaca mulatta
Homo sapiens
Mus musculus
Rattus norvegicus

technology: spotted oligonucleotide

manufacture_protocol: Proprietary spotting of DNA oligonucleotides containing dimer or trimer repeat of reverse complement of target sequence.


title: ORB MiRBase 17 Multispecies MicroRNA Microarray

organism:
Homo sapiens
Mus musculus
Rattus norvegicus


title: Agilent-036901 CytoSure Haematological Cancer + SNP 8x60k

first: Itziar

last: Salaverria

address: Rossello 153

institute: Hospital Clínic

description:
http://www.ogt.co.uk/products/824_cytosure_cancer_snp_arrays

Arrays of this design have barcodes that begin with 2536901

The chromosome coordinates are based on NCBI build 37/hg19

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom

The ID column represents the Agilent Feature Extraction feature extraction numbers

Rows and columns are numbered as scanned by an Axon Scanner

To match data scanned on an Axon scanner, use the RefNumber

manufacture_protocol: see manufacturer's web site at http://www.agilent.


title: Illumina HiSeq 2500 (Mus musculus domesticus)

organism: Mus musculus domesticus


title: Illumina NextSeq 500 (Spongilla lacustris)

status: Public on Jul 25 2019

organism: Spongilla lacustris


title: Illumina MiniSeq (Cricetulus griseus)

organism: Cricetulus griseus


title: Illumina HiSeq 2500 (Dengue virus 4; Homo sapiens)

organism:
Homo sapiens
dengue virus type 4


title: Illumina HiSeq 2000 (Oreochromis mossambicus)

organism: Oreochromis mossambicus


title: Illumina HiSeq 4000 (Parachlorella kessleri)

status: Public on Jul 24 2019

organism: Parachlorella kessleri


title: Illumina HiSeq 4000 (Cricetulus griseus)


title: BGISEQ-500 (Saccharopolyspora erythraea)

organism: Saccharopolyspora erythraea


title: Illumina NextSeq 500 (Nothobranchius furzeri)

organism: Nothobranchius furzeri


title: HiSeq X Ten (Bursaphelenchus xylophilus)

organism: Bursaphelenchus xylophilus


title: HiSeq X Ten (Beauveria bassiana ARSEF 2860)

organism: Beauveria bassiana ARSEF 2860


title: Illumina HiSeq 4000 (Platichthys stellatus)

status: Public on Jul 23 2019

organism: Platichthys stellatus


title: Illumina MiniSeq (synthetic construct)

organism: synthetic construct


title: NanoString PanCancer Immune Profiling Panel

status: Public on Jun 02 2020

city: Nottingham

first: Sergio

last: Rutella

address: Clifton Campus

department: John van Geest Cancer Research Centre

country: United Kingdom

institute: Nottingham Trent University

organism: Homo sapiens

distribution: non-commercial

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Illumina NextSeq 500 (Cinachyrella cavernosa)

organism: Cinachyrella cavernosa


title: Illumina HiSeq 3000 (Ceratopteris richardii)

status: Public on Jul 22 2019

organism: Ceratopteris richardii


title: Illumina HiSeq 2500 (Deinococcus radiodurans)

organism: Deinococcus radiodurans


title: Illumina HiSeq 2500 (Caulobacter vibrioides NA1000)

organism: Caulobacter vibrioides NA1000


title: Illumina HiSeq 2500 (Micropterus salmoides)

organism: Micropterus salmoides


title: Illumina HiSeq 2500 (Sinopodophyllum hexandrum)

status: Public on Jul 19 2019

organism: Sinopodophyllum hexandrum


title: [Clariom_D_Mouse] Affymetrix Clariom D Assay, Mouse [CDF: Brainarray ClariomDMouse_Mm_ENTREZG_21.0.0]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Mus musculus

description: The custom chip definition file from Brainarray Version 21.0 based on Entrez ID.

manufacture_protocol: See manufacturer's web site (www.affymetrix.com).


title: Illumina HiSeq 2500 (Homo sapiens; Measles virus strain Schwarz)

organism:
Homo sapiens
Measles virus strain Schwarz


title: Illumina HiSeq 2500 (Homo sapiens; Measles morbillivirus)

organism:
Homo sapiens
Measles morbillivirus


title: Illumina HiSeq 2000 (Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051)

organism: Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10


title: RSMAS Crawford Fundulus 384 cDNA [full array version]

city: San Diego

first: Goran

last: Bozinovic

state: CA

address: 3370 Dale Street

institute: Boz Institute

organism: Fundulus heteroclitus

technology: spotted DNA/cDNA

manufacture_protocol: Microarrays were printed using 329 cDNAs which encode essential proteins for cellular metabolism. All ESTs with enzyme commission numbers or associated with central metabolic pathways from a F. heteroclitus EST collection of over 42,000 expressed sequences were included on the array. These cDNAs were amplified with amine-linked primers and printed on 3-D Link Activated slides (Surmodics Inc., Eden Prairie, MN) at the University of Miami core microarray facility.


title: Antigen Discovery Inc. ETEC Protein Array

status: Public on Jul 20 2019

city: Irvine

first: Arlo

middle: Zan

last: Randall

address: 1 Technology Drive, Suite E309

institute: Antigen Discovery Inc

organism: Escherichia coli

technology: spotted peptide or protein

description: Enterotoxigenic Escherichia coli (ETEC); spotted protein - printed without purification from E. coli cell free expression system


title: Agilent-084217 CapitalBio Technology Human CircRNA Array v2

city: Yantai

first: yeying

last: sun

address: No.346 Guanhai road

country: China

institute: Binzhou Medical Univeristy

manufacture_protocol: see manufacturer's web site at: http://www.capitalbiotech.com/ProductServer.html?categoryId=50


title: Illumina MiSeq (insect gut metagenome)

status: Public on Jul 18 2019

organism: insect gut metagenome


title: NimbleGen HELP Promoter Array [2006-10-26_HG17_HELP_Promoter]

city: Bronx

first: Amit

last: Verma

state: NY

address: 1300 Morris Park Ave

department: Medicine

institute: Albert Einstein College of Medicine

description: Annotation in this record based on HG17.

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Illumina NextSeq 500 (Aspergillus fumigatus; Homo sapiens; Human betaherpesvirus 5)

status: Public on Jul 16 2019

organism:
Homo sapiens
Human betaherpesvirus 5
Aspergillus fumigatus


title: Agilent-079503 MTCarmona_Acinetobacter_v2

city: A Coruña

first: Maria

last: Tomas-Carmona

address: As Xubias, 84

department: Microbiology Department

institute: Instituto de Investigación Biomédica de A Coruña (INIBIC) / Complexo Hospitalario Universitario de A Coruña (CHUAC)

organism: Acinetobacter towneri

description:
Acinetobacter towneri beathriz, genome_id=202956.5

Arrays of this design have barcodes that begin with 16079503 or 2579503.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NanoString nCounter Mouse RNA Expression Assay

status: Public on Jul 17 2019

city: Rockville

first: Tongwu

last: Zhang

address: 9609 Medical Center Drive

department: Division of Cancer Epidemiology & Genetics

institute: National Cancer Institute

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Illumina NextSeq 500 (Nannospalax galili)

organism: Nannospalax galili


title: [Clariom_D_Human] Affymetrix Human Clariom D Assay [CDF: Brainarray ClariomDHuman_Hs_GENECODEG_22.0.0]

organism: Homo sapiens

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 2000 (Cocos nucifera)

organism: Cocos nucifera


title: Illumina NextSeq 500 (Hyphomonas neptunium)

organism: Hyphomonas neptunium


title: Illumina HiSeq 2000 (Aurantiochytrium sp. T66)

organism: Aurantiochytrium sp. T66


title: Illumina HiSeq 2000 (Rosellinia necatrix)

status: Public on Jul 14 2019

organism: Rosellinia necatrix


title: Illumina HiSeq 2500 (Pteropus vampyrus)

organism: Pteropus vampyrus


title: Illumina NextSeq 500 (Vanilla planifolia)

status: Public on Jul 11 2019

organism: Vanilla planifolia


title: Illumina HiSeq 2500 (Rhodobacter capsulatus SB 1003)

status: Public on Jul 12 2019

organism: Rhodobacter capsulatus SB 1003


title: NextSeq 550 (Cavia porcellus)

status: Public on Jul 13 2019

organism: Cavia porcellus


title: TaqMan RT-qPCR

status: Public on Jul 10 2019

city: Hong Kong

first: Lai-Shan

last: TAM

state: Hong Kong

address: 30-32 Silver City Street, Shatin

department: Department of Medicine and Therapeutics, Prince of wales hospital

country: Hong Kong

institute: The Chinese University of Hongkong

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Murid betaherpesvirus 1; Mus musculus)

organism:
Mus musculus
Murid betaherpesvirus 1


title: Illumina HiSeq 2500 (Cenchrus purpureus)

organism: Cenchrus purpureus


title: Illumina HiSeq 2000 (Caulobacter vibrioides NA1000)

status: Public on Jul 09 2019

organism: Caulobacter vibrioides NA1000


title: HiSeq X Ten (Arabidopsis)

organism: Arabidopsis


title: Illumina HiSeq 4000 (Bacteroides thetaiotaomicron)

organism: Bacteroides thetaiotaomicron


title: Illumina HiSeq 2000 (Mus musculus; Streptococcus pneumoniae)

organism:
Streptococcus pneumoniae
Mus musculus


title: Illumina HiSeq 2500 (soil metagenome)

organism: soil metagenome


title: Illumina HiSeq 2500 (Oryzias minutillus)

status: Public on Jul 05 2019

organism: Oryzias minutillus


title: Illumina NextSeq 500 (Aspergillus fumigatus; Homo sapiens)

organism:
Homo sapiens
Aspergillus fumigatus


title: Illumina HiSeq 4000 (Lactuca sativa)

organism: Lactuca sativa


title: Illumina NovaSeq 6000 (Desulfovibrio ferrophilus)

status: Public on Jul 08 2019

organism: Desulfovibrio ferrophilus


title: Illumina HiSeq 4000 (Turicibacter sanguinis)

status: Public on Jul 03 2019

organism: Turicibacter sanguinis


title: Thermo Fisher scientific Human custom TaqMan low density array cards

city: Chieti

first: Rosa

last: Mancinelli

address: via dei Vestini

country: Italy

institute: university of Chieti

organism: Homo sapiens

description: Taqman Low Density Array configuration: 4


title: TaqMan OpenArray Chicken Custom 56 Gene Expresssion Assay Plate

city: University Park

first: Vivek

last: Kapur

state: PA

address: 205 Wartik Lab

department: Animal Science

institute: Pennsylvania State University

organism: Gallus gallus

description:
QuantStudio 12K Flex Real-Time PCR System, OpenArray block and Chicken Custom TaqMan OpenArray Real-Time PCR Plates
OpenArray Custom Format 56 QuantStudio 12K FlexDesign


title: Illumina HiSeq 2000 (Viruses)

last: GEO

organism: Viruses


title: Multiplexed single cell qPCR - Fluidigm BioMark HD - Mus musculus

city: La Jolla

first: Luc

last: Teyton

address: 10550 North Torrey Pines Road

institute: TSRI

organism: Mus musculus

description: Fluidigm BioMark multiplex single cell qPCR utilizing the Dynamic Array 96x96


title: Illumina HiSeq 4000 (Brassica napus)

organism: Brassica napus


title: NimbleGen Mouse ChIP-chip Array [090826_MM9_JD_ChIP_HX1]

status: Public on Jul 02 2019

city: Boston

first: Yuka

last: Takeuchi

state: MA

address: 185 Cambridge Street

department: Molecular biology

institute: MGH

description:
Annotation based on the UCSC mm9 assembly genome.
The 50-mer probes were selected every 20 bases with no repeat masking, for both forward and reverse.


title: NimbleGen Sus scrofa [DESIGN_ID 577551; PROBE_ID]

city: Uxbridge

first: Ronan

last: McCarthy

state: Middlesex

address: Heinz Wolff Building, Kingston Lane, Brunel University London

institute: Brunel University London

organism: Sus scrofa

description:
Sus scrofa genome build v10.2

design file:
131018_Sscr_ref_miRNA_FS_exp.ndf
131018_Sscr_ref_miRNA_FS_exp.ngd
DESIGN_ID=577551

manufacture_protocol: See manufacturer's website at http://www.nimblegen.com/.


title: BGISEQ-500 (Populus ussuriensis)

status: Public on Jul 01 2019

organism: Populus ussuriensis


title: Illumina NextSeq 500 (Triticum aestivum)

organism: Triticum aestivum


title: NanoString nCounter Human v3 microRNA expression system

city: Columbus

first: Qi-En

last: Wang

state: OH

address: 420 W.12th Avenue

department: Radiation Oncology

institute: The Ohio State University

manufacture_protocol: See manufacturer's website: http://www.nanostring.com


title: Illumina NovaSeq 6000 (Gadus morhua)

organism: Gadus morhua


title: Illumina HiSeq 2500 (synthetic RNA)

organism: synthetic RNA


title: Applied Biosystems (Thermo Fisher) TaqMan Human microRNA Array (RT-PCR miRNA Profiling)

status: Public on Aug 13 2014

description: PCR assay


title: StepOnePlus™ Real-Time PCR System [mouse]

status: Public on Jul 07 2019

city: San Donato Milanese

first: Marco

last: Piccoli

address: piazza Malan 1

institute: IRCCS Policlinico San Donato

description:
PCR assay
singleplex


title: NextSeq 550 (Plasmodium falciparum)

organism: Plasmodium falciparum


title: Illumina HiSeq 3000 (Ovis aries)

organism: Ovis aries


title: Illumina NextSeq 500 (Campylobacter jejuni)

organism: Campylobacter jejuni


title: Illumina HiSeq 2500 (Shewanella algae)

organism: Shewanella algae


title: Illumina NextSeq 500 (Cellulophaga baltica; Cellulophaga phage phi14:2)

organism:
Cellulophaga baltica
Cellulophaga phage phi14:2


title: BGISEQ-500 (Solanum lycopersicum)

organism: Solanum lycopersicum


title: Illumina NovaSeq 6000 (Pseudomonas aeruginosa)

organism: Pseudomonas aeruginosa