title: Agilent Custom L.donovani Expression 8x15k Array (AMADID: 027511) designed by Genotypic Technology Private Limited

status: Public on Aug 30 2019

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Leishmania donovani

technology: in situ oligonucleotide

distribution: custom-commercial


title: Illumina Miseq (Saccharomyces cerevisiae)

last: GEO

country: USA

organism: Saccharomyces cerevisiae

technology: high-throughput sequencing

distribution: virtual


title: NimbleTherapeutics High Density Human Peptide Array

status: Public on Oct 21 2019

city: Madison

first: Ken

last: Lo

state: WI

address: 6014 Sandstone Drive

institute: NimbleTherapeutics

organism: Homo sapiens

technology: other

manufacture_protocol:
Array consists of >4.6M peptides, includes citrullination and homocitrullination against the entire human proteome represented as overlapping 16mer peptides.
High Density Peptide Array


title: Illumina HiSeq 2500 (Drosophila mauritiana x Drosophila sechellia)

status: Public on Aug 29 2019


title: Illumina HiSeq 2500 (Drosophila mauritiana x Drosophila simulans)


title: Illumina HiSeq 2500 (Drosophila sechellia x Drosophila mauritiana)


title: Illumina HiSeq 2500 (Drosophila simulans x Drosophila mauritiana)


title: Illumina HiSeq 2500 (Drosophila simulans x Drosophila sechellia)


title: Caltech 16K Oligo Mouse Array

status: Public on Feb 25 2003

city: Pasadena

first: Sangdun

last: Choi

state: CA

address: 1200 E. California Blvd

department: Biology

institute: California Institute of Technology

organism: Mus musculus

technology: spotted oligonucleotide

description:
The 16K mouse Oligo probes used in this microarray were designed and manufactured by different companies.
A total of 13,327 probes were designed and manufactured by Operon Technologies, Inc. while 2,304 probes were designed by Compugen and manufactured by Sigma Genosys.
Probes made by Operon are 70mers in length while probes made by Compugen and Sigma are 65mers in length.
The probes were inkjet-printed on the array by Agilent Technologies (Palo Alto, CA).

distribution: non-commercial


title: Affymetrix Human Clariom D Assay [transcript (gene) version] [CDF: ClariomSHuman_Hs_ENTREZG, version 22]

city: Mannheim

first: Carolina

last: Delatorre

address: Theodor-Kutzer-Ufer 1-3

country: Germany

institute: University Heidelberg

manufacture_protocol: This is similar to GPL23126 but a custom CDF environment was used to extract data [Brainarray Version 22, ClariomDHuman]. CDF and other files can be downloaded from Brainarray (see web link below).


title: NextSeq 550 (Aspergillus nidulans)

status: Public on Aug 28 2019

organism: Aspergillus nidulans


title: Customized Nanostring nCounter human PanCancer Progression panel

status: Public on Jul 01 2020

city: Los Angeles

first: Sandra

last: Orsulic

address: 10833 Le Conte Ave

department: Obstetrics and Gynecology

institute: David Geffen School of Medicine at UCLA

manufacturer: NanoString Technologies, Inc.; Seattle, WA

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Illumina HiSeq 1500 (Chiloscyllium punctatum)

status: Public on Aug 27 2019

organism: Chiloscyllium punctatum


title: Illumina HiSeq 2000 (Homo sapiens; Vibrio vulnificus MO6-24/O)

organism:
Homo sapiens
Vibrio vulnificus MO6-24/O


title: Illumina HiSeq 2000 (Mesocentrotus franciscanus)

status: Public on Aug 26 2019

organism: Mesocentrotus franciscanus


title: Illumina NextSeq 500 (Acinetobacter baylyi; Escherichia coli)

status: Public on Aug 23 2019

organism:
Escherichia coli
Acinetobacter baylyi


title: Customized Nanostring nCounter human PanCancer Immune Profiling panel


title: Clonorchis sinensis CombiMatrix Corporation custom 12K oligonucleotide microarray

city: Seoul

first: Sung-Jong

last: Hong

address: Heukseok-ro

department: Dept. of Medical Environmental Biology

country: South Korea

institute: Chung-Ang University

organism: Clonorchis sinensis

manufacture_protocol: Combimatrix CustomArray 12K


title: Illumina HiSeq 2000 (Bacillus velezensis)

status: Public on Aug 22 2019

organism: Bacillus velezensis


title: Illumina Nextseq 500 (Mus musculus)


title: Illumina HiSeq 2500 (Acipenser dabryanus)

organism: Acipenser dabryanus


title: UNMC-MWG Human 10K v1.0

status: Public on Aug 24 2019

city: Estado de Mexico

first: Rubi

last: Viedma

state: Estado de Mexico

address: Av. de los Barrios 1, Los Reyes Ixtacala,  Tlalnepantla,

department: bioquimica

country: Mexico

institute: unam

manufacture_protocol: The gene clones on the chip consisted of unique 50-mer oligonucleotide sense strand sequences synthesized by MWG Biotech (Ebersberg, Germany).


title: Illumina Genome Analyzer IIx (Pneumocystis murina)

status: Public on Aug 21 2019

organism: Pneumocystis murina


title: Illumina HiSeq 2500 (Mycobacterium tuberculosis H37Ra)

organism: Mycobacterium tuberculosis H37Ra


title: HiSeq X Ten (Salmonella enterica)

organism: Salmonella enterica


title: Illumina HiSeq 4000 (Streptomyces coelicolor)

organism: Streptomyces coelicolor


title: Illumina NextSeq 500 (Gossypium hirsutum)

organism: Gossypium hirsutum


title: miRCURY LNA miRNA arrays v.11 [miRNA_ID version]

status: Public on Aug 25 2019

city: Copenhagen

first: Malene

middle: Maag

last: Kristensen

address: Blegdamsvej 3

country: Denmark

institute: University of Copenhagen

description: lot numbers; 31004.01, 31004.04, 31060.03, 31060.04 and 31060.07


title: Agilent-027323 Nephotettix cincticeps NC2010A

status: Public on Aug 20 2019

city: Tsukuba

first: Yuki

last: Nakamura

state: Ibaraki

address: 1-1 Owashi

country: Japan

institute: National Institute of Agrobiololgical Sciences

organism: Nephotettix cincticeps

description: identifiers are ESTs.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: HiSeq X Ten (Escherichia coli K-12)

organism: Escherichia coli K-12


title: Ion Torrent S5 XL (Danio rerio)

organism: Danio rerio


title: HiSeq X Ten (Canis lupus familiaris)

organism: Canis lupus familiaris


title: Agilent-037237 P.falciparum_Pf3D7v7.1_Transcriptome_apimito (ORF version)

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Plasmodium falciparum


title: Illumina NextSeq 500 (Vibrio campbellii)

organism: Vibrio campbellii


title: Illumina HiSeq 4000 (Durio zibethinus)

organism: Durio zibethinus


title: Illumina HiSeq 2000 (Equus ferus)

status: Public on Aug 19 2019

organism: Equus ferus


title: Illumina HiSeq 2000 (Tulipa gesneriana)

organism: Tulipa gesneriana


title: Illumina Genome Analyzer (Macaca fuscata)

organism: Macaca fuscata


title: Illumina NovaSeq 6000 (Sciaenops ocellatus)

organism: Sciaenops ocellatus


title: Illumina NovaSeq 6000 (Listeria monocytogenes)

organism: Listeria monocytogenes


title: Illumina NovaSeq 6000 (Taeniopygia guttata)

organism: Taeniopygia guttata


title: Illumina NextSeq 500 (Aspergillus carbonarius)

organism: Aspergillus carbonarius


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [Gene Name Version]

organism: Homo sapiens

description: The annotated genes map to probes as reported by Bioconductor's 'hgu133plus2.db' or BioMart repository ENSEMBL_MART_ENSEMBL with probes matching to 'LINC00597' added by hand.

distribution: commercial

manufacture_protocol: see manufacturer's web site


title: Yongsheng Li Lab glucose and lipid metabolism PCR panel

status: Public on Aug 17 2019

city: Chongqing

first: Huakan

last: Zhao

state: State...

address: Xinqiao Street 183, Shapingba district

department: Clinical Medicine Research Center

country: China

institute: Xinqiao Hospital, Third Military Medical University

technology: RT-PCR

description: PCR assay

manufacture_protocol: Primers were designed with Primer5 software and SYBR Green II were used for specific detection.Primers were synthesized by Sangon Biotech.


title: Illumina NovaSeq 6000 (Rubus idaeus)

status: Public on Aug 16 2019

organism: Rubus idaeus


title: Aspergillus fumigatus AF293 30K microarray

status: Public on Aug 15 2019

city: Sungbuk-gu

first: HYEWON

last: SEO

state: Seoul

address: Anam-dong

institute: Korea university

organism: Aspergillus fumigatus Af293

manufacture_protocol: ss-DNA is synthesized in situ on glass substrates functionalized with amines. The synthesis process is proprietary but uses digital micromirror mediated photolithography to generate sufficient acid locally to remove acid labile protecting groups on 5'-terminal phosphoramidite monomers where the next phosphoramidite base will be coupled. The arrays can be used to hybridize cRNA or cDNA


title: Agilent-016332 Agilent Custom Human 8x15K (AMADID: 16332) designed  by Genotypic Technology Private Limited.

city: Tezpur

first: Rupak

last: Mukhopadhyay

state: - If in U.S, Select a State -

address: Napaam, Sonitpur, Assam

department: Department of Molecular Biology and Biotechnology

institute: Tezpur University


title: Illumina NextSeq 500 (Saccharolobus solfataricus)

status: Public on Aug 14 2019

organism: Saccharolobus solfataricus


title: Illumina NextSeq 500 (Methanocaldococcus jannaschii)

organism: Methanocaldococcus jannaschii


title: Illumina HiSeq 4000 (Vibrio cholerae)

organism: Vibrio cholerae


title: Agilent-036809 Bos taurus custom 8x60K array [Feature number version]

city: Jouy-en-Josas

first: Mariam

last: Raliou

address: Allée de Vilvert

department: PHASE

country: France

institute: INRAE

organism: Bos taurus

description:
Custom bovine Gene Expression array 8x60K designed on bovine annotated Ensembl transcripts (http://www.ensembl.org/index.html, genome assembly UMD3.1) completed with 2100 Ensembl references representing 1632 NCB1 specific transcripts (https://www.ncbi.nlm.nih.gov/) found on the INRA 22K array

BDRiPud
Arrays of this design have barcodes that begin with 16036809 or 2536809.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: HiSeq X Ten (Ziziphus jujuba)

organism: Ziziphus jujuba


title: Arraystar Mouse LncRNA microarray V3B (Agilent-055750 custom Probe Name version)

city: Chengdu

first: Ming

last: Li

address: Ke Yuan Nan lu 88

department: Department of Anesthesiolog

institute: Sichuan University

organism: Mus musculus

description: Platform table includes controls.

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2000 (Capra aegagrus)

status: Public on Aug 13 2019

organism: Capra aegagrus


title: Illumina NovaSeq 6000 (Ambystoma mexicanum)

organism: Ambystoma mexicanum


title: Illumina NovaSeq 6000 (Micropogonias undulatus)

organism: Micropogonias undulatus


title: Illumina HiSeq 2500 (Zymomonas mobilis subsp. mobilis)

status: Public on Aug 12 2019

organism: Zymomonas mobilis subsp. mobilis


title: Agilent-079407 ArrayXS Human V3 079025 [PROBE NAME]

city: Nuthetal

first: Heike

last: Vogel

state: BRB

address: Arthur-Scheunert-Allee 114-116

department: Department of Experimental Diabetology

institute: German Institute of Human Nutrition Potsdam-Rehbruecke

description:
ArrayXS Microarray, Valid Proof Certified, experimentally validated by OakLabs' MyArray strategy, validated for LIQA and LIQA WT labelling kit

Arrays of this design have barcodes that begin with 16079407 or 2579407.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NextSeq 500 (Solanum pimpinellifolium)

organism: Solanum pimpinellifolium


title: Illumina HiSeq 4000 (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)


title: Illumina NextSeq 500 (Thermococcus sp. AM4)

organism: Thermococcus sp. AM4


title: Illumina HiSeq 4000 (Caenorhabditis briggsae)

organism: Caenorhabditis briggsae


title: Illumina HiSeq 2000 (Pleurotus tuoliensis)

organism: Pleurotus tuoliensis


title: Illumina NextSeq 500 (Pyrococcus furiosus)

organism: Pyrococcus furiosus


title: Illumina MiSeq (wastewater metagenome)

organism: wastewater metagenome


title: Illumina MiSeq (blank sample)

status: Public on Aug 10 2019

organism: blank sample


title: Illumina MiSeq (Pelvicachromis pulcher)

organism: Pelvicachromis pulcher


title: Illumina HiSeq 2000 (Komagataella phaffii)

status: Public on Aug 09 2019

organism: Komagataella phaffii


title: Illumina NovaSeq 6000 (Capra hircus)

organism: Capra hircus


title: Illumina NovaSeq 6000 (Escherichia coli BW25113)

organism: Escherichia coli BW25113


title: Illumina HiSeq 2000 (Granulicella sp. WH15)

status: Public on Aug 08 2019

organism: Granulicella sp. WH15


title: Ion Torrent Proton (Oryza sativa)

organism: Oryza sativa


title: Illumina HiSeq 2500 (Rhodopseudomonas palustris)

organism: Rhodopseudomonas palustris


title: Illumina NextSeq 500 (Salmonella enterica)

organism: Salmonella enterica


title: Illumina NovaSeq 6000 (Staphylococcus aureus)

status: Public on Aug 28 2019

organism: Staphylococcus aureus


title: Illumina MiSeq (synthetic RNA)

organism: synthetic RNA


title: Agilent-045823 Mycobacterium tuberculosis [Feature Number]

status: Public on Aug 07 2019

city: Gainesville

first: Hendrik

last: Luesch

state: Florida

address: 1345 Center drive

department: Medicinal Chemistry

institute: University of Florida

organism: Mycobacterium tuberculosis H37Ra

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Thermococcus kodakarensis)

last: GEO

organism: Thermococcus kodakarensis


title: Illumina Hiseq 3000 (Homo sapiens)

organism: Homo sapiens


title: nCounter® PanCancer Pathways Panel [GenBank accession version]

description: 730 genes from cancer-associated pathways

manufacturer: NanoString Technologies, Seattle, WA, USA

manufacture_protocol: https://www.nanostring.com/support/product-support/support-documentation; nCounter Analysis System User Manual (MAX/FLEX) MAN-C0035


title: Illumina HiSeq 2500 (Homo sapiens; Rattus norvegicus)

organism:
Homo sapiens
Rattus norvegicus


title: Kinex™ KAM-1325 antibody microarray

city: Boston

first: Hui

last: Pan

address: 1 Joslin Place

department: Bioinformatics and Biostatistics Core

institute: Joslin Diabetes Center

technology: antibody

description: The antibodies used on the Kinex™ KAM-1325 antibody microarrays consist of polyclonal and monoclonal antibodies that are specific for proteins or phosphosites.


title: Illumina HiSeq 2000 (Homo sapiens; Rattus norvegicus)


title: Illumina HiSeq 2500 (Escherichia coli BL21(DE3))

status: Public on Aug 11 2019

organism: Escherichia coli BL21(DE3)


title: Illumina NextSeq 500 (Rhodopseudomonas palustris)


title: Illumina HiSeq 4000 (Capsaspora owczarzaki)

organism: Capsaspora owczarzaki


title: Illumina HiSeq 4000 (Dendrobium nobile)

status: Public on Aug 06 2019

organism: Dendrobium nobile


title: Illumina HiSeq 3000 (Didelphis virginiana)

organism: Didelphis virginiana


title: Illumina NextSeq 500 (Capsaspora owczarzaki)


title: Illumina NextSeq 500 (Nicotiana benthamiana)

organism: Nicotiana benthamiana


title: Illumina NextSeq 500 (Coccolithovirus; Emiliania huxleyi)

organism:
Emiliania huxleyi
Coccolithovirus


title: Illumina MiniSeq (Coccolithovirus; Emiliania huxleyi)


title: Illumina NextSeq 500 (Homo sapiens; Human herpesvirus 6 (strain GS))

status: Public on Aug 04 2019

organism:
Homo sapiens
Human herpesvirus 6 (strain GS)


title: Illumina NextSeq 500 (Homo sapiens; Human herpesvirus 6 strain Z29)

organism:
Homo sapiens
Human herpesvirus 6 strain Z29


title: Illumina HiSeq 4000 (Thermus thermophilus HB27)

organism: Thermus thermophilus HB27


title: Illumina mouse sentrix8 V2 r3 expression beadchip

status: Public on Aug 02 2019

city: Heidelberg

first: Jochen

last: Utikal

address: Im Neuenheimer Feld 280

department: Clinical Cooperation Unit Dermato-Oncology

institute: German Cancer Research Center

organism: Mus musculus

technology: oligonucleotide beads


title: Illumina NextSeq 500 (Yersinia pestis)

status: Public on Aug 01 2019

organism: Yersinia pestis


title: Illumina HiSeq 3000 (Canis lupus familiaris)

organism: Canis lupus familiaris


title: Illumina NextSeq 500 (Papio anubis)

status: Public on Aug 05 2019

organism: Papio anubis


title: Illumina MiSeq (Yersinia pseudotuberculosis IP 32953)

organism: Yersinia pseudotuberculosis IP 32953


title: HartlLab Drosophila melanogaster PCR products 22k

first: Katherine

last: Silkaitis

state: MA

address: 655 Huntington Ave, 2-237

department: Environmental Health

institute: Harvard T.H. Chan School of Public Health

organism: Drosophila melanogaster

technology: spotted DNA/cDNA

manufacture_protocol: Printed in house using purified PCR products. Alternative representation of GPL6056.


title: C1 Auto Prep System Fluidigm RT-PCR array

city: Philadelphia

first: Takeshi

last: Katsuda

state: PA

address: 421 Curie Blvd, BRB II/III Rm531

department: Perelman School of Medicine

institute: University of Pennsylvania

organism: Rattus norvegicus

description: PCR assay

manufacturer: Biomark Dynamic Arrays (Fluidigm, BioMark, Pueblo, CO, USA


title: SPOC2_MMCC

status: Public on Jan 01 2008

city: Irvine

first: Michael

last: McClelland

address: 132 Med Surge I

department: Microbiology & Molecular Genetics

institute: University of California, Irvine

organism: Salmonella enterica

first: Steffen

last: Porwollik

first: Carlos

last: Santiviago

first: Xiao-Qin

last: Xia

manufacture_protocol: custom made Salmonella oligo array


title: Agilent-085072 FZ_IBG1_4plex_085072_Corynebacterium

status: Public on Jul 31 2019

city: Juelich

first: Tino

last: Polen

state: NRW

address: Wilhelm-Johnen-Str 1

department: IBG-1: Biotechnology

institute: Forschungszentrum Jülich GmbH

organism:
Gluconobacter oxydans
Escherichia coli
Corynebacterium glutamicum
Pseudomonas putida KT2440
Bacillus subtilis subsp. subtilis str. 168

description: Corynebacterium glutamicum (NC_006958), Bacillus subtilis str. 168 (NC_000964), Gluconobacter oxydans (NC_006677, NC_006672, NC_006673, NC_006674, NC_006675, NC_006676), Escherichia coli (NC_000913), Pseudomonas putiida KT2440 (NC_002947)

manufacturer: Agilent Technologies (Waldbronn, Germany).

manufacture_protocol: See Agilent Technologies web site.


title: SPOC3_MMCC


title: Illumina HiSeq 2000 (Hydra vulgaris)

organism: Hydra vulgaris


title: Ion Torrent PGM (Aspergillus terreus)

organism: Aspergillus terreus


title: NanoString nCounter Human miRNA

status: Public on Jul 22 2019

first: GEO

last: admin

organism: Homo sapiens