title: Illumina HiSeq 2000 (Escherichia coli str. K-12 substr. DH10B)

status: Public on Sep 30 2019

last: GEO

country: USA

technology: high-throughput sequencing

distribution: virtual


title: miRNA qPCR profiling

city: Oslo

first: Nur

last: Duale

address: Lovisenbergg. 8, P.O.Box 4404 Nydalen,

department: Division of Climate and Environment Health

country: Norway

institute: Norwegian Institute of Public Health

organism: Mus musculus

technology: RT-PCR

description: qPCR assay

manufacture_protocol: Sigma


title: Illumina HiSeq 4000 (Staphylococcus aureus subsp. aureus)

status: Public on Sep 26 2019

organism: Staphylococcus aureus


title: Agilent-067023 Sus scrofa  array (Probe name version)

city: Orient

first: James

middle: J.

last: Zhu

state: NY

department: Foreign Animal Disease Research Unit

institute: USDA-ARS

organism: Sus scrofa

technology: spotted oligonucleotide

distribution: custom-commercial

manufacture_protocol: manufacturer's web site


title: Illumina MiSeq (Enterobacteria phage T7)

status: Public on Sep 27 2019

organism: Escherichia phage T7


title: Illumina HiSeq 4000 (Solanum chacoense)

organism: Solanum chacoense


title: Illumina HiSeq 2000 (Starmerella bombicola)

organism: Starmerella bombicola


title: Illumina HiSeq 2000 (Trichoderma atroviride)

organism: Trichoderma atroviride


title: TaqMan RT-qPCR Calcaneal tendon plasticity following gastrocnemius muscle injury in rat

city: Brasíia

first: Fabrício

middle: Reichert

last: Barin

address: Centro Metropolitano, Conjunto A, Lote 01

country: Brazil

institute: Universidade de Brasília

organism: Rattus norvegicus

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 4000 (Drosophila simulans)

organism: Drosophila simulans


title: TaqMan® Array Human MicroRNA A Cards v3.0 [4398965]

status: Public on Oct 28 2019

city: Colorado Springs

first: Olivia

last: Hatton

state: CO

address: 14 E Cache La Poudre St

department: Molecular Biology

institute: Colorado College

organism: Homo sapiens

description: PCR assay


title: Illumina HiSeq 2500 (Ricinus communis)

organism: Ricinus communis


title: Illumina HiSeq 4000 (Quercus lobata)

organism: Quercus lobata


title: Illumina HiSeq 2500 (Escherichia coli str. K-12 substr. DH10B)


title: Illumina HiSeq 4000 (Nasturtium officinale)

status: Public on Sep 25 2019

organism: Nasturtium officinale


title: Illumina HiSeq 2500 (Caenorhabditis elegans; Vibrio parahaemolyticus)

organism:
Vibrio parahaemolyticus
Caenorhabditis elegans


title: Illumina HiSeq 2500 (Beta vulgaris subsp. vulgaris)

organism: Beta vulgaris subsp. vulgaris


title: Illumina HiSeq 2500 (Candida albicans SC5314)

organism: Candida albicans SC5314


title: Agilent-084956 026655QM_RCUG_Mus Musculus 084107 [Probe Name version]

city: Hannover

first: Oliver

last: Dittrich-Breiholz

address: Carl-Neuberg-Str. 1

department: Research Core Unit Genomics

country: Germany

institute: Medical School Hannover

technology: in situ oligonucleotide

description:
The Microarray represents a refined version of the Whole Mouse Genome Oligo Microarray 4x44K v2 (Design ID 026655, Agilent Technologies), called ?026655QM_RCUG_MusMusculus? (Design ID 084956) developed by the Research Core Unit Genomics (RCUG) of Hannover Medical School. Microarray design was created at Agilent?s eArray portal using a 1x1M design format for mRNA expression as template. All non-control probes of design ID 026655 have been printed four times within a region comprising a total of 181560 Features (170 columns x 1068 rows). Four of such regions were placed within one 1M region giving rise to four microarray fields per slide to be hybridized individually (Customer Specified Feature Layout). Control probes required for proper Feature Extraction software operation were determined and placed automatically by eArray using recommended default settings. All controls were finally deleted from the platform file.

Arrays of this design have barcodes that begin with 16084956 or 2584956.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent non-control Probe ID.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: HiSeq X Ten (Flaveria trinervia)

status: Public on Sep 24 2019

organism: Flaveria trinervia


title: Illumina HiSeq 2500 (Parachlamydia acanthamoebae UV-7)

organism: Parachlamydia acanthamoebae UV-7


title: HiSeq X Ten (Flaveria ramosissima)

organism: Flaveria ramosissima


title: HiSeq X Ten (Flaveria robusta)

organism: Flaveria robusta


title: HiSeq X Ten (Flaveria sonorensis)

organism: Flaveria sonorensis


title: Illumina HiSeq 2500 (Prunus dulcis)

organism: Prunus dulcis


title: Illumina HiSeq 2500 (Castanea mollissima)

organism: Castanea mollissima


title: Illumina HiSeq 2500 (Hafnia alvei)

status: Public on Sep 21 2019

organism: Hafnia alvei


title: Illumina HiSeq 4000 (Syringa oblata)

status: Public on Sep 23 2019

organism: Syringa oblata


title: Illumina MiSeq (Heterocephalus glaber)

organism: Heterocephalus glaber


title: Illumina HiSeq 2000 (Solanum x juzepczukii)

status: Public on Sep 20 2019

organism: Solanum x juzepczukii


title: Illumina HiSeq 2000 (Solanum ahanhuiri)

organism: Solanum ahanhuiri


title: Illumina HiSeq 2000 (Solanum chaucha)

organism: Solanum chaucha


title: Illumina HiSeq 2000 (Burkholderia glumae)

organism: Burkholderia glumae


title: Illumina HiSeq 1500 (Bacillus subtilis)

organism: Bacillus subtilis


title: Illumina HiSeq 2000 (Solanum phureja)

organism: Solanum phureja


title: Illumina NextSeq 500 (Trichostrongylus colubriformis)

status: Public on Sep 19 2019

organism: Trichostrongylus colubriformis


title: Illumina HiSeq 2000 (Solanum stenotomum subsp. goniocalyx)

organism: Solanum stenotomum subsp. goniocalyx


title: Illumina NovaSeq 6000 (Petromyzon marinus)

organism: Petromyzon marinus


title: CapitalBio 8K Candida albicans genome array

status: Public on Sep 18 2019

city: Nanjing

first: Dongliang

last: Yang

state: Jiangsu

address: 9 wenyuan road, xianlin

department: Institute of Advanced Materials

country: China

institute: Nanjing University of Posts and Telecommunications

organism: Candida albicans SC5314

manufacture_protocol: There is 7925 70-mer oligonucleotides in the 8 K C. albicans genome array and the oligo library (C.albicans Genome Oligo Set Version 1.1) can be retrieved from Operon corporation (http://www.Operon.com). Then oligo library was pointed to a 75×25 mm chemically modified glass slide using a SmartArrayTM (CapitalBio Corp., Beijing, China) and the location of the genes on the chip can be found in "gene list.xlsx".


title: Applied Biosystems, TaqMan® Low Density Array (TLDA) Human MicroRNA Cards (A card v2.0, B card v3.0)

city: Rotterdam

first: Erik

last: Wiemer

address: Wytemaweg 80

department: Medical Oncology

country: Netherlands

institute: Erasmus University Medical Center

organism: Homo sapiens

description: PCR assay


title: Illumina HiSeq 2500 (Triticum urartu)

organism: Triticum urartu


title: Illumina HiSeq 4000 (Salmonella enterica subsp. enterica serovar Enteritidis)


title: Illumina HiSeq 2500 (Oryza sativa; Pyricularia oryzae)

organism:
Oryza sativa
Pyricularia oryzae


title: Illumina HiSeq 3000 (synthetic construct)

organism: synthetic construct


title: Illumina HiSeq 2500 (Hynobius quelpaertensis)

organism: Hynobius quelpaertensis


title: Illumina HiSeq 2500 (Hynobius yangi)

organism: Hynobius yangi


title: Illumina HiSeq 2500 (Hynobius unisacculus)

organism: Hynobius unisacculus


title: Illumina HiSeq 2500 (Hynobius leechii)

organism: Hynobius leechii


title: BGISEQ-500 (Clonorchis sinensis)

organism: Clonorchis sinensis


title: Illumina NextSeq 500 (Ascaridia galli)

status: Public on Sep 17 2019

organism: Ascaridia galli


title: Illumina HiSeq 4000 (Petromyzon marinus)


title: Illumina HiSeq 2500 (Salmonella enterica subsp. enterica serovar Enteritidis)


title: Illumina HiSeq 4000 (Ambystoma californiense)

organism: Ambystoma californiense


title: Illumina NextSeq 500 (Pseudomonas chlororaphis)

organism: Pseudomonas chlororaphis


title: Illumina HiSeq 2000 (Carica papaya)

organism: Carica papaya


title: Illumina HiSeq 4000 (Diospyros kaki)

organism: Diospyros kaki


title: Illumina HiSeq 4000 (Salmonella enterica subsp. enterica serovar Typhimurium)


title: Exiqon miRCURY LNA Universal RT microRNA PCR Human Panel I [miRBase v20]

city: Copenhagen

first: Malene

middle: Maag

last: Kristensen

address: Blegdamsvej 3

country: Denmark

institute: University of Copenhagen

description: Platform annotation is based on miRBase v20.

manufacture_protocol: See manufacturer's website.


title: Illumina HiSeq 2500 (Fusarium oxysporum f. sp. lycopersici 4287)

status: Public on Sep 16 2019


title: Ion Torrent S5 XL (pig gut metagenome)

organism: pig gut metagenome


title: Illumina NovaSeq 6000 (Mycobacterium tuberculosis)

organism: Mycobacterium tuberculosis


title: HiSeq X Ten (Candida albicans)

organism: Candida albicans


title: Illumina HiSeq 4000 (Hungateiclostridium thermocellum)

organism: Acetivibrio thermocellus


title: Illumina HiSeq 1000 (Plasmodium falciparum)

organism: Plasmodium falciparum


title: Illumina NextSeq 500 (Pseudomonas protegens)

organism: Pseudomonas protegens


title: Illumina HiSeq 2500 (Fundulus heteroclitus)

status: Public on Sep 14 2019

organism: Fundulus heteroclitus


title: Agilent-048014 Custom Rice Whole Genome 8x60k gene expression array (Probe name version)

status: Public on Sep 12 2019

city: New Delhi

first: Nandula

last: Raghuram

email: raghuram98@hotmail.com, ravipathak@aol.in, pathakster@gmail.com, navjyoti.chakraborty@gmail.com

state: Delhi

address: Dwarka, Sector -16C

department: School of Biotechnology

country: India

institute: Guru Gobind Singh Indraprastha University

organism: Oryza sativa

description: Designed by Genotypic Technology Private Limited (AMADID:048014)


title: Illumina HiSeq 4000 (Andrias davidianus)

status: Public on Sep 11 2019

organism: Andrias davidianus


title: Illumina HiSeq 2000 (Serratia marcescens WW4)

status: Public on Sep 10 2019

organism: Serratia marcescens WW4


title: Agilent-045772  F. candida 1209_SBC

city: shanghai

first: gao

last: yang

address: 151 Libing Rd., Zhangjiang Hi-Tech park, Pudong New Area

institute: shbio

organism: Folsomia candida


title: Illumina HiSeq 2000 (halite metagenome)

status: Public on Sep 09 2019

organism: halite metagenome


title: QIAgen Profiler PCR Array Mouse Signal Transduction PathwayFinder assay panel

city: Silver Spring

first: Hang

last: Xie

state: Maryland

address: 10993 New Hampshire Ave WO 52/72 Rm 1324

institute: US Food and Drug Administration, Center for Biologics Evaluation and Research

organism: Mus musculus

description:
Lung PCR assay panel
QIAgen RT² Profiler panel of PCR assays.


title: Illumina Hiseq 2500 (Homo sapiens)

organism: Homo sapiens


title: Illumina HiSeq 2500 (Listeria monocytogenes ATCC 19115)

status: Public on Sep 06 2019

organism: Listeria monocytogenes ATCC 19115


title: AB 5500xl Genetic Analyzer (Salmonella enterica subsp. enterica serovar Paratyphi A)


title: Ion Torrent Proton (Drosophila melanogaster; Homo sapiens)

organism:
Drosophila melanogaster
Homo sapiens


title: HiSeq X Ten (Apis mellifera)

organism: Apis mellifera


title: Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Probe Name version, hg19/GRCh37)

city: Bron

first: Sylvain

last: Mareschal

address: Centre de Biopathologie Est, 59 boulevard Pinel

department: NGS-HCL platform

country: France

institute: Hospices Civils de Lyon

description: Platform annotation updated by cghRA 1.6.0 through BLAT remapping against the GRCh37 assembly. WACA biases are also provided for wave artifact removal.

distribution: commercial


title: Agilent-064079 Mustela putorius furo (ferret) array (condensed version)

city: Wageningen

first: Evert

middle: M.

last: van Schothorst

address: De Elst 1

institute: Wageningen University

organism: Mustela putorius furo

description:
Arrays of this design have barcodes that begin with 16064079 or 2564079.
This is a condensed version (RefSeq accessions in ID column) of the full platform available under GEO accession number GPL19256
Sequences are available in the supplementary file.


title: Illumina HiSeq 2000 (Hylobates moloch)

status: Public on Sep 05 2019

organism: Hylobates moloch


title: HiSeq X Ten (Hylobates muelleri)

organism: Hylobates muelleri


title: Illumina NextSeq 500 (Torulaspora microellipsoides)

organism: Torulaspora microellipsoides


title: HiSeq X Ten (Hylobates moloch)


title: Illumina HiSeq 2000 (Symphalangus syndactylus)

organism: Symphalangus syndactylus


title: Illumina NextSeq 500 (Bordetella pertussis)

organism: Bordetella pertussis


title: Illumina HiSeq 2000 (Hylobates pileatus)

organism: Hylobates pileatus


title: Illumina HiSeq 2500 (Nomascus gabriellae)

organism: Nomascus gabriellae


title: HiSeq X Ten (Nomascus leucogenys)

organism: Nomascus leucogenys


title: Illumina HiScanSQ (Schizosaccharomyces pombe)

organism: Schizosaccharomyces pombe


title: Illumina NovaSeq 6000 (Homo sapiens; Rattus norvegicus)

organism:
Homo sapiens
Rattus norvegicus


title: Illumina HiScanSQ (Candida albicans)

organism: Candida albicans


title: NextSeq 550 (Macaca fascicularis)

organism: Macaca fascicularis


title: Illumina HiSeq 2000 (Thermothelomyces thermophilus)

organism: Thermothelomyces thermophilus


title: Illumina NextSeq 500 (Cryptococcus neoformans)

organism: Cryptococcus neoformans


title: Illumina HiSeq 4000 (Petunia x hybrida)

organism: Petunia x hybrida


title: Illumina HiSeq 2500 (Bacillus mobilis)

status: Public on Sep 04 2019

organism: Bacillus mobilis


title: Illumina HiSeq 2000 (Nomascus gabriellae)


title: LightCycler 480 Instrument II-pig RT-PCR panel

city: Changsha

first: Ming

last: Qi

state: Hunan

address: 644 Yuanda 2nd Rd

institute: Insititute of Subtropical Agriculture

organism: Sus scrofa

description: RT-PCR assay


title: BGISEQ-500 (Malus domestica)

organism: Malus domestica


title: Illumina NovaSeq 6000 (Cricetulus griseus)

organism: Cricetulus griseus


title: Illumina HiSeq 2000 ([Candida] auris)

status: Public on Sep 03 2019

organism: Candidozyma auris


title: Illumina HiSeq 4000 (Solanum tuberosum)

organism: Solanum tuberosum


title: Illumina NextSeq 500 (Solanum melongena)

organism: Solanum virginianum


title: Illumina MiSeq (Brucella abortus)

status: Public on Sep 02 2019

organism: Brucella abortus


title: Illumina HiSeq 2000 (Escherichia coli B; Escherichia coli K-12)

organism:
Escherichia coli B
Escherichia coli K-12


title: Illumina NextSeq 500 (Dromaius novaehollandiae)

organism: Dromaius novaehollandiae


title: Illumina HiSeq 4000 (Nomascus leucogenys)

organism: Nomascus leucogenys


title: Illumina HiSeq 2000 (Solanum x curtilobum)

organism: Solanum x curtilobum


title: Illumina NextSeq 500 (Saccharomyces cerevisiae W303)

organism: Saccharomyces cerevisiae W303


title: Illumina NextSeq 500 (Candida albicans; Pseudomonas aeruginosa)

organism:
Pseudomonas aeruginosa
Candida albicans


title: Applied Biosystems Human Taqman MicroRNA Array v3.0

status: Public on Sep 01 2019

city: Jena

first: Diana

middle: Maria

last: Morales Prieto

address: Am Klinikum 1

department: Obstetrics

institute: Jena University Hospital

organism: Homo sapiens

manufacture_protocol: see manufacturer's website: http://www.appliedbiosystems.com/


title: Illumina HiSeq 1000 (seawater metagenome)

organism: seawater metagenome


title: NimbleGen Multi-species Cichlid CGH array [120718_Cichlid_EB_CGH]

status: Public on Jul 26 2019

city: Portland

first: Suzy

middle: CP

last: Renn

state: Oregon

address: 3203 SE Woodstock Blvd., Biology Room B124

department: Biology

institute: Reed College

organism:
Oreochromis niloticus
Haplochromis burtoni
Neolamprologus brichardi
Maylandia zebra
Pundamilia nyererei

description:
Array primarily based on tilapia assembly OreNil 1.0, however additional probes were designed to BROAD cichlid assemblies for other available version 1 genomes (https://www.broadinstitute.org/tilapia/tilapia-genome-project)
Probes designed to 100% Consensus-Sequence  from tilapia genome assembly based on multiple genome alignment of the 5 Cichlid species genome (MAF from Satsuma), with additional probes designed to sequences from multiple non-tilapia species but missing from tilatia genome.


title: Agilent-024900 Genotend INRA Bos Taurus 8x15k v2

city: Saint Genes Champanelle

first: Celine

last: BOBY

address: Centre INRA Auvergne-Rhône-Alpes

institute: INRA

organism: Bos taurus

first: Jean-Francois

last: Hocquette

first: Carine

last: Bernard-Capel

first: Veronique

last: Vidal

first: Beline

last: Jesson

first: Hubert

last: Levéziel

first: Gilles

last: Renand

first: Isabelle

last: Cassar-Malek

manufacture_protocol: Specific probes for bovine muscular genes ; design: more than 3000 genes involved in muscle biology or meat quality were selected from genetic programmes (about 25% of the selected genes), proteomic studies (about 14% of the selected genes), transcriptomic studies (more than 30% of the selected genes), or from scientific publications (about 20% of the selected genes). Other genes related to muscle biology were selected on the basis of the authors' expert knowledge. Whenever possible, several probes were used for each gene (e.g., 17 probes for DNAJA1). On average, four to five different probes were designed for each gene of interest.


title: Stanford Functional Genomics Facility SHDZ

status: Public on Dec 31 2016

city: PARIS

first: Severine

middle: Aude

last: Degrelle

address: 4 avenue de l'Observatoire

institute: INSERM UMRS-1139

technology: spotted DNA/cDNA

distribution: non-commercial

manufacturer: Stanford Functional Genomics Facility, Stanford School of Medicine

manufacture_protocol: Material is transferred from microtiter plate wells to the slide surface by an automated print head


title: BGISEQ-500 (Candida parapsilosis)

last: GEO

organism: Candida parapsilosis


title: Agilent-028266 Oryza sativa

city: Bremen

first: Barbara

last: Reinhold-Hurek

state: Bremen

address: Leobener Str. 5

department: Microbe-Plant Interactions

institute: University of Bremen

organism: Oryza sativa

manufacture_protocol: Agilent