title: Affymetrix GeneChip Custom-Made Muscle Chip

status: Public on Feb 10 2003

city: Binghamton

first: Eric

middle: P

last: Hoffman

state: NY

address: PO Box 6000

department: Pharmaceutical Sciences

country: USA

institute: Binghamton University - SUNY

organism: Homo sapiens

technology: spotted oligonucleotide

description: MuscleChip containing 4,601 muscle probe sets representing 1150 known genes expressed in muscle, and 2,075 EST clusters from a non-normalized subtracted muscle sequencing project (28,074 EST sequences).  This included 460 novel EST clusters, showing no match to previously characterized genes in any database.   Each probe set was designed to contain 20-32 25mer oligonucleotides (10-16 paired perfect match and mismatch probe pairs per gene), with each probe evaluated for hybridization kinetics (Tm), and similarity to other sequences.   Approximately 120,000 oligonucleotides were synthesized by photolithography and light-activated chemistry per microarray.

distribution: custom-commercial


title: TaqMan Rodent MicroRNA A+B Cards v3.0

status: Public on Jan 16 2021

city: London

first: Dean

middle: Harvey

last: Betts

state: Ontario

address: 1151 Richmond St.

department: Department of Physiology and Pharmacology

country: Canada

institute: Western University

organism:
Mus musculus
Rattus norvegicus

technology: RT-PCR

description: PCR assay

distribution: virtual

manufacture_protocol: See manufacturer's website


title: Agilent-032570 Candida glabrata [gene version]

status: Public on Mar 31 2020

city: ORSAY

first: Thomas

last: Denecker

address: Bâtiments 400 - UFR des Sciences - Université Paris-Sud - 15, rue Georges Clémenceau

department: Genome Biology

country: France

organism: Nakaseomyces glabratus

technology: in situ oligonucleotide

manufacture_protocol: see Agilent


title: Illumina HiSeq 2000 (Murine leukemia virus; Mus musculus)

status: Public on Oct 30 2019

last: GEO

organism:
Mus musculus
Murine leukemia virus

technology: high-throughput sequencing


title: NanoString nCounter human PanCancer Pathways Panel

city: Rockville

first: Brandon

middle: W

last: Higgs

state: Maryland

address: 2273 Research Blvd Suite 220

institute: Immunocore, Ltd

technology: other


title: HiSeq X Ten (Mycolicibacterium smegmatis MC2 155)

status: Public on Oct 31 2019

organism: Mycolicibacterium smegmatis MC2 155


title: Illumina NovaSeq 6000 (Giardia intestinalis)

organism: Giardia duodenalis


title: Agilent-084938 Het-group (Probe name version)

city: Stockholm

first: Marcus

last: Stenegren

address: Svante Arrhenius vag 20A

department: Ecology Environment and Plant Sciences

country: Sweden

institute: Stockholm University

organism:
Calothrix rhizosoleniae
Richelia intracellularis

description:
Two design files, Agilent-084938 and Agilent-085960, are linked at the foot of the Platform record.
The Agilent-085960 design is a streamlined version of the Agilent-084938 design (fewer probes).

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NextSeq 500 (Pogona vitticeps)

status: Public on Oct 29 2019

organism: Pogona vitticeps


title: Illumina NextSeq 500 (Pseudopus apodus)

organism: Pseudopus apodus


title: Illumina NextSeq 500 (Pantherophis guttatus)

organism: Pantherophis guttatus


title: Illumina NextSeq 500 (Lepidothyris fernandi)

organism: Mochlus fernandi


title: Signaling Explorer Array (SET100)

city: St Louis

first: Jing

last: Hughes

state: Missouri

address: 660 S Euclid

department: Internal Medicine

institute: Washington University

technology: antibody

distribution: commercial


title: Illumina NextSeq 500 (Eryx colubrinus)

organism: Eryx colubrinus


title: Phospho Explorer Array (PEX100)


title: Illumina NextSeq 500 (Adeno-associated virus)

organism: Adeno-associated virus


title: Illumina NextSeq 500 (Chrysopelea ornata)

organism: Chrysopelea ornata


title: NanoString nCounter Mouse Gene Expression Custom CodeSet

status: Public on Nov 25 2019

city: Boston

first: Lisa

middle: D.

last: Boxer

state: MA

address: 220 Longwood Ave., Goldenson Bldg Rm 405

department: Neurobiology

institute: Harvard Medical School

organism: Mus musculus

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina NextSeq 500 (Cervus canadensis)

status: Public on Oct 28 2019

organism: Cervus canadensis


title: Illumina NovaSeq 6000 (Ephydatia muelleri)

organism: Ephydatia muelleri


title: Illumina HiSeq 2000 (Murine leukemia virus)

organism: Murine leukemia virus


title: Applied Biosystems TaqMan OpenArray Mouse Inflammation Panel

city: College Park

first: Robert

middle: Smith

last: Oakes

state: MD

address: 8278 Paint Branch Drive

department: Bioengineering

institute: University of Maryland, College Park

description:
High-throughput TaqMan™ RT-qPCR assay run on QuantStudio™ 12K Flex
Probe list: https://assets.thermofisher.com/TFS-Assets/LSG/brochures/4475393_MmInflamm_02-2014.xls


title: Illumina HiSeq 2500 (Trichinella patagoniensis)

organism: Trichinella patagoniensis


title: Illumina NextSeq 500 (Trioceros jacksonii)

organism: Trioceros jacksonii


title: Illumina NextSeq 500 (Python regius)

organism: Python regius


title: Illumina HiSeq 2500 (Trichinella sp. T6)

organism: Trichinella sp. T6


title: Illumina HiSeq 2500 (Trichinella murrelli)

organism: Trichinella murrelli


title: Illumina HiSeq 2500 (Trichinella sp. T9)

organism: Trichinella sp. T9


title: Illumina HiSeq 2500 (Trichinella papuae)

organism: Trichinella papuae


title: Illumina HiSeq 2500 (Trichinella britovi)

organism: Trichinella britovi


title: Illumina HiSeq 2500 (Trichinella nelsoni)

organism: Trichinella nelsoni


title: Illumina HiSeq 2500 (Trichinella nativa)

organism: Trichinella nativa


title: Medaka EG6000 Custom Array

status: Public on Oct 25 2019

city: Itakura

first: Shosaku

last: Kashiwada

state: Gunma

address: 1-1-1 Izumino

department: Department of Life Sciences

country: Japan

institute: Toyo University

organism: Oryzias latipes

description: oligo DNA (35~40mer)

manufacturer: Mizuki Biotech Co. Ltd. (used CustomArray Inc's oligo array B3 synthesizer)

manufacture_protocol: DNA microarray used for this study was designed and fabricated by CombiMatrix B3 CustomArray synthesizer at Mizuki Biotech Co. Ltd. (Fukuoka, Japan), and this custom-made microarray contained duplicated (or triplicated) 35~40mer oligo DNA probes representing 5,600 medaka mRNAs, that had been archived in publicly accessible nucleotide databases.   There are 12,544 spots on this microarray, among them 12,000 spots were used for the oligo probes of medaka genes (mRNA), 70 spots were used for the negative control probes (NC) from non-medaka genes, 326 spots were for factory QC of the array, and 148 spots contained no oligo probes.


title: Illumina HiSeq 2500 (Gymnopus androsaceus)

status: Public on Oct 24 2019

organism: Gymnopus androsaceus


title: Illumina NextSeq 500 (Dasypeltis gansi)

organism: Dasypeltis gansi


title: Illumina NextSeq 500 (Basiliscus vittatus)

organism: Basiliscus vittatus


title: HiSeq X Ten (Mycobacterium tuberculosis)

organism: Mycobacterium tuberculosis


title: BGISEQ-500 (unidentified plasmid)

organism: unidentified plasmid


title: Illumina NextSeq 500 (Astyanax mexicanus)

organism: Astyanax mexicanus


title: NanoString nCounter Vantage DNA Repair Panel

status: Public on Oct 23 2019

city: Liverpool

first: Sophie

last: Cowman

address: Crown Street

department: Institute of Integrative Biology

country: United Kingdom

institute: University of Liverpool

organism: Homo sapiens

manufacture_protocol: nCounter XT Assay user manual (MAN-10023)


title: Nanostring Custom Codeset. Reporter Libraray file id: McCann_snoRNA_3_C7138.rlf

city: RTP

first: Rick

middle: David

last: Fannin

state: NC

address: 111 Tw Alexander Dr, MD D204

department: NIEHS/NIH

institute: Mr.

organism: Mus musculus

manufacture_protocol:
https://www.nanostring.com/support/product-support/support-documentation#user_manuals
Direct hybridizaion with Epifluorescent tagged probes


title: HiSeq X Ten (Zeugodacus cucurbitae)

organism: Zeugodacus cucurbitae


title: Illumina HiSeq 2500 (Acinetobacter baylyi ADP1)

organism: Acinetobacter baylyi ADP1


title: Illumina HiSeq 2500 (Chalara longipes)

status: Public on Oct 22 2019

organism: Stipitochalara longipes


title: Illumina NovaSeq 6000 (Homo sapiens; Human papillomavirus type 2)

organism:
Homo sapiens
Human papillomavirus type 2


title: BGISEQ-500 (Bifidobacterium breve DSM 20213 = JCM 1192)


title: Illumina HiSeq 2500 (Trichinella sp. T8)

organism: Trichinella sp. T8


title: Illumina HiSeq 2500 (Trichinella zimbabwensis)

organism: Trichinella zimbabwensis


title: Illumina HiSeq 3000 (Humulus lupulus)

status: Public on Oct 21 2019

organism: Humulus lupulus


title: [HuEx-1_0-st] Affymetrix Human Human Exon 1.0 ST Array [CDF: huex10st_Hs_GENECODEG_22.0.0]

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: This array is identical to GPL5175 but the data were analyzed with a custom CDF environment.

manufacture_protocol: See manufacturer's web site.


title: MinION (Phyllostachys edulis)

organism: Phyllostachys edulis


title: Illumina MiniSeq (Salmonella enterica subsp. enterica serovar Typhimurium)


title: Agilent-026636 Lactobacillus plantarum Prueba Lp IFI 021109

city: Madrid

first: Felix

last: Lopez de Felipe

address: Jose Antonio Novais

country: Spain

institute: ICTAN-CSIC

organism: Lactiplantibacillus plantarum

description:
Genoma Total Lp WCFS1

Arrays of this design have barcodes that begin with 16026636 or 2526636.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Ion Torrent PGM (mouse gut metagenome)

organism: mouse gut metagenome


title: Illumina HiSeq 2500 (Sulfurospirillum multivorans)

status: Public on Oct 18 2019

organism: Sulfurospirillum multivorans


title: TaqMan Array Human MicroRNA A Cards v2.0

city: Suita

first: Kenjiro

last: Sawada

state: Osaka

address: Yamadaoka 2-15

department: Obstetrics and Gynecology

institute: Osaka University Faculty of Medicine

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Illumina Hiseq 4000 (Staphylococcus aureus)

organism: Staphylococcus aureus


title: HiSeq X Ten (Komagataella phaffii)

status: Public on Oct 17 2019

organism: Komagataella phaffii


title: Print_1437 (Block_Column_Row IDs)

technology: spotted DNA/cDNA

description:
The ID column includes the Block_Column_Row numbers found in GPR files.
A different version of this platform is assigned accession number GPL6699.

distribution: non-commercial

manufacturer: Stanford Functional Genomics Facility, Stanford School of Medicine

manufacture_protocol: Material is transferred from microtiter plate wells to the slide surface by an automated print head


title: Illumina HiSeq 2500 (Crassostrea gigas)

status: Public on Oct 16 2019

organism: Magallana gigas


title: Illumina Novaseq 6000 (Mus musculus)


title: Illumina HiSeq 2500 (Haloferax volcanii DS2)

organism: Haloferax volcanii DS2


title: Illumina HiSeq 2000 (Leiocassis longirostris)

organism: Leiocassis longirostris


title: Illumina HiSeq 4000 (Pseudomonas aeruginosa PA14)

organism: Pseudomonas aeruginosa PA14


title: Sequel (Klebsiella pneumoniae)

organism: Klebsiella pneumoniae


title: Illumina HiSeq 3000 (Pseudomonas syringae pv. tomato str. DC3000)

status: Public on Oct 15 2019


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [CDF: hta20_Hs_GENECODEG, Brainarray version 22.0.0]

organism: Homo sapiens

description: This array is identical to GPL17586 but the data were analyzed with a custom CDF environment.


title: Illumina NextSeq 500 (Brevundimonas subvibrioides)

organism: Brevundimonas subvibrioides


title: Nanostring Custom Codeset. Reporter Libraray file id: McCann_SnoRNA_2.rlf

organism: Mus musculus


title: 037907-Agilent Fragaria x ananassa FraGenomics 35k [Feature number version]

city: CÓRDOBA

first: Francisco

middle: Javier

last: Molina-Hidalgo

state: Cordoba

address: Edif. Severo Ochoa (C6.) Planta Baja-Ala Norte Campus de Rabanales

department: Biochemistry and molecular biology

institute: University of Cordoba

organism: Fragaria x ananassa

description: This array of 60-mer probes is based on the Nimblegen Array 110713_Fragaria_JMB_exp (GPL23035). The Nimblegen design files attached to this record contain accurate gene description and probe sequence information for this Agilent array.  However, the Agilent array does not contain all probes listed in the .ndf file and includes additional probes not listed in the .ndf file.  Probe sequences for non-control probes are available in the platform table and in the supplementary file 037907_Annotation.txt available at the foot of this record.


title: MouseRef-8_V2_0_R3_11278551_A.bgx.xml

status: Public on Oct 12 2019

city: Heidelberg

first: John

middle: M

last: Mariadason

state: Victoria

address: Austin Health, 145 Studyley Road

department: Gastrointestinal Cancers

country: Australia

institute: Olivia Newton-John Cancer Research Institute

technology: oligonucleotide beads

manufacture_protocol: See manufacturer's website.


title: 074663 Arraystar Mouse CircRNA microarray V2 [Feature Number version]

relation: Alternative to: GPL21826 (probeID version)


title: Agilent-074571 RAT_LNCRNA_20150413 (Feature number version)

city: shanghai

first: gao

last: yang

address: 151 Libing Rd., Zhangjiang Hi-Tech park, Pudong New Area

country: China

institute: shbio

organism: Rattus norvegicus

relation: Alternative to: GPL27597 (Probe name version)


title: Illumina HiSeq 2500 (Prunus armeniaca)

status: Public on Oct 11 2019

organism: Prunus armeniaca


title: HiSeq X Ten (Tagetes erecta)

status: Public on Oct 10 2019

organism: Tagetes erecta


title: Illumina HiSeq 2500 (Musa acuminata)

organism: Musa acuminata


title: LC Sciences μParaflo human miRNA array

city: Qingdao

first: Rongjian

last: Xu

address: No.38 Dengzhou Road

institute: The Affiliated Hospital of Qingdao University


title: Illumina HiSeq 2500 (Musa balbisiana)

organism: Musa balbisiana


title: Illumina HiSeq 2500 (Francisella tularensis subsp. holarctica LVS)

status: Public on Oct 09 2019


title: Illumina MiSeq (Brevundimonas subvibrioides)


title: Illumina NovaSeq 6000 (Tursiops truncatus)

organism: Tursiops truncatus


title: LC_MRA-1003_miRRat_20

city: Galveston

first: Qingjie

last: Li

state: Texas

address: 301 University Blvd

institute: University of Texas Medical Branch

manufacture_protocol: Rat miRNA microarray with 100% coverage of mature  miRNAs listed in miRBase version 20. Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://miRBase.org) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.


title: Illumina HiSeq 4000 (Bifidobacterium adolescentis)

status: Public on Oct 08 2019

last: GEO

organism: Bifidobacterium adolescentis


title: Illumina NextSeq 500 (Poeciliopsis retropinna)

organism: Poeciliopsis retropinna


title: Illumina NextSeq 500 (Poeciliopsis turrubarensis)

organism: Poeciliopsis turrubarensis


title: Agilent-024241 Xq22_44K Tiling array (Probe Name version)

city: Houston

first: Vahid

last: Bahrambeigi

address: 1 Baylor Plaza

department: Human Molecular Genetics

institute: Baylor College Of Medicine

description: We designed a tiling-path oligonucleotide microarray spanning 15.5 Mb involving the PLP1 region on Xq22. The custom 4x44k Agilent Technologies microarray was designed using the Agilent earray website. We selected 44,000 probes covering chrX: 98,028,855-113,513,744  (NCBI build 37), including the PLP1 gene, which represents an average distribution of 1 probe per 386 bp. Each patient sample was run once using this array; hybridization was done using a gender-matched reference sample.


title: Illumina HiSeq 2000 (Mimachlamys nobilis)

organism: Mimachlamys nobilis


title: Illumina HiSeq 2500 (Salmonella enterica subsp. enterica serovar Cerro)

status: Public on Oct 07 2019


title: Illumina HiSeq 2000 (Salix linearistipularis)

organism: Salix linearistipularis


title: Illumina NextSeq 500 (Entamoeba invadens)

status: Public on Oct 04 2019

organism: Entamoeba invadens


title: Illumina HiSeq 2000 (Avian avulavirus 1)

status: Public on Oct 03 2019

organism: avian paramyxovirus 1


title: Illumina HiSeq 4000 (Coilia nasus)

organism: Coilia nasus


title: Illumina HiSeq 2500 (Streptomyces clavuligerus ATCC 27064)

status: Public on Oct 02 2019

organism: Streptomyces clavuligerus


title: Illumina HiSeq 3000 (Saccharolobus solfataricus)

organism: Saccharolobus solfataricus


title: Illumina HiSeq 2500 (Pseudomonas aeruginosa LESB58)

organism: Pseudomonas aeruginosa LESB58


title: Illumina HiSeq 2000 (Populus trichocarpa; Rhizophagus irregularis)

organism:
Populus trichocarpa
Rhizophagus irregularis


title: Illumina HiSeq 2000 (Penicillium italicum)

organism: Penicillium italicum


title: TaqMan OpenArray Real-time PCR System III

status: Public on Oct 01 2019

city: Jouy en Josas, France

first: Unai

middle: Escribano

last: Vazquez

state: --- Sélectionner ---

address: Domaine de Vilvert Bat 440

department: MICALIS

institute: INRA

organism: Mus musculus

description: catalog number  4475393


title: TaqMan OpenArray Real-time PCR System IV

description: catalog number  4475393


title: Illumina Novaseq 6000 (Homo sapiens)

organism: Homo sapiens


title: TaqMan OpenArray Real-time PCR System II

description:
catalog number 4471128
224 assays


title: FibroChip Release 2

city: Saint Genes Champanelle

first: Evelyne

last: Forano

state: France

address: INRA Centre ARA

department: UMR MEDIS

organism:
Bacteroides fragilis
Bacteroides thetaiotaomicron
Butyrivibrio fibrisolvens
Fibrobacter succinogenes
Xylanibacter ruminicola
Selenomonas ruminantium
Ruminococcus albus
Ruminococcus flavefaciens
Enterococcus faecium
Lactococcus lactis
Clostridium acetobutylicum
Clostridium cellulovorans
Clostridioides difficile
Acetivibrio thermocellus
Clostridium beijerinckii
Ruminiclostridium cellulolyticum
Levilactobacillus brevis
Limosilactobacillus fermentum
Bifidobacterium adolescentis
Cellulomonas fimi
Cellulomonas flavigena
Neocallimastix frontalis
Neocallimastix patriciarum
Piromyces communis
Bifidobacterium animalis
Bacteroides ovatus
Fibrobacter intestinalis
[Eubacterium] cellulosolvens
Bacteroides sp.
Pseudobacteroides cellulosolvens
Lachnospira eligens
Agathobacter rectalis
Ruminococcus sp.
Enterobacter sp.
Piromyces sp.
Epidinium caudatum
Eudiplodinium maggii
Polyplastron multivesiculatum
Orpinomyces joyonii
Piromyces rhizinflatus
Segatella bryantii
Piromyces sp. 'equi'
Roseburia intestinalis
Pseudobutyrivibrio xylanivorans
Butyrivibrio hungatei
Bifidobacterium longum
Acetivibrio clariflavus
Epidinium ecaudatum
Roseburia hominis
uncultured Neocallimastigales
Bacteroides xylanisolvens
Cellulosilyticum ruminicola
Ruminococcus champanellensis
Orpinomyces sp.

manufacture_protocol: see manufacturer's web site at https://www.genomics.agilent.com/en/Custom-Gene-Expression-Microarrays/Custom-Gene-Expression-Microarrays/?cid=AG-PT-132&tabId=AG-PR-1038


title: SOMAmer Proteomic assay

city: Groningen

first: Sanne

last: Arjaans

address: Hanzeplein 1

country: Netherlands

institute: University Medical Center Groningen

technology: spotted peptide or protein

description: Aptamber based; SOMAmer

manufacture_protocol: Rohloff, JC et al. (2014) “Nucleic acid ligands with protein-like side chains: Modified aptamers and their use as diagnostic and therapeutic agents.” Molecular Therapy Nucleic Acids 3(10):e201.


title: Agilent-024359 Agilent SurePrint C. acetobutylicum Gene Expression  Microarray 8x60K

first: Yunpeng

last: Yang

address: 300， Fenglin Road

institute: Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences

organism: Clostridium acetobutylicum


title: Illumina NovaSeq 6000 (Oryza sativa)

status: Public on Oct 28 2019

organism: Oryza sativa


title: NextSeq 550 (synthetic construct)

organism: synthetic construct


title: Ion Torrent S5 XL (Mus musculus)


title: TaqMan OpenArray Real-time PCR System I

description:
catalog number 4471128
224 assays


title: Illumina HiSeq 2500 (Streptomyces griseus)

organism: Streptomyces griseus


title: Illumina HiSeq 2000 (Methylobacter tundripaludum 21/22)

organism: Methylobacter tundripaludum 21/22


title: Illumina HiSeq 2000 (Methylobacter tundripaludum 31/32)

organism: Methylobacter tundripaludum 31/32


title: Illumina HiSeq 2000 (Rhizophagus irregularis; Sorghum bicolor)

organism:
Sorghum bicolor
Rhizophagus irregularis


title: Print_1437

status: Public on Apr 08 2008

city: Stanford

first: Daniel

last: Hogan

state: CA

address: 279 Campus Dr B439

institute: Stanford University

relation: Alternative to: GPL27630 (Block_Column_Row ID)


title: Illumina HiSeq 2500 (Streptomyces venezuelae)

organism: Streptomyces venezuelae


title: 074663 Arraystar Mouse CircRNA microarray V2

status: Public on May 07 2016

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

relation: Alternative to: GPL27607 ((feature number version))