title: RiboArray® Custom Human mRNA Array 4X2k

status: Public on Dec 31 2019

city: Beijing

first: Jie

last: Chen

address: No. 52 Fucheng Road Haidian District Beijing

country: China

institute: Peking University Cancer Hospital

organism: Homo sapiens

technology: spotted DNA/cDNA

distribution: custom-commercial

manufacture_protocol: See manufacturer's website


title: Agilent-062611 Francisella noatunensis subsp. orientalis [FNO_v3 062394]

city: Belo Horizonte

first: Henrique

middle: César Pereira

last: Figueiredo

state: Minas Gerais

address: Av. Antônio Carlos 6627, Caixa Postal 567, Pampulha

country: Brazil

institute: AQUACEN - National Reference Laboratory for Aquatic Animal Diseases

organism: Francisella orientalis

technology: in situ oligonucleotide

description:
Chip FNO12, assembly v1, fita v8, Locus tag interno

Arrays of this design have barcodes that begin with 16062611 or 2562611.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2500 (Oryzias mekongensis)

status: Public on Dec 26 2019

last: GEO

country: USA

organism: Oryzias mekongensis

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 2500 (Oryza sativa Indica Group x Oryza sativa Japonica Group)

status: Public on Dec 30 2019


title: nCounter miRNA expression

city: Seoul

first: Baek Gil

last: Kim

address: 50-1 Yonsei-Ro

country: South Korea

institute: Yonsei University

technology: other


title: Arraystar Human LncRNA microarray V2.0 (Agilent-033010)

status: Public on Dec 27 2019

city: Toronto

first: Philip

last: Marsden

address: 209 Victoria St

country: Canada

institute: St. Michael's hospital/University of Toronto


title: BGISEQ-500 (Canis lupus familiaris)

organism: Canis lupus familiaris


title: Applied Biosystems TaqMan Array Human MicroRNA A Cards v2.0

status: Public on Dec 24 2019

city: Milan

first: Francesco

last: Prattichizzo

address: via Milanese

country: Italy

institute: IRCCS MultiMedica

technology: RT-PCR

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Phytophthora parasitica)

status: Public on Dec 20 2019

organism: Phytophthora nicotianae


title: Agilent-023490 Wilson Modified Zebrafish V2 Microarray

status: Public on Dec 23 2019

city: Hamilton

first: Andrew

middle: G.

last: McArthur

state: Ontario

address: 1280 Main Street West

department: Biochemistry & Biomedical Sciences

institute: McMaster University

organism: Danio rerio

description:
A modified version of the Zebrafish V2 microarray.  Includes 20 custom probes for P450s and Nuclear Receptors.
Arrays of this design have barcodes that begin with 16023490 or 2523490.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 4000 (Mangifera indica)

organism: Mangifera indica


title: Illumina HiSeq 2500 (Yersinia entomophaga)

status: Public on Dec 22 2019

organism: Yersinia entomophaga


title: Illumina MiSeq (Ophioderma brevispina)

status: Public on Dec 19 2019

organism: Ophioderma brevispina


title: RiboArray Rat mRNA Array

city: Xiamen

first: Zhenghong

last: Zuo

address: School of Life Sciences, Xiang'an Campus, Xiamen University, Xiang'an District, Xiamen, Fujian Province, China

department: School of Life Sciences, Xiamen University

institute: Xiamen University

organism: Rattus norvegicus


title: Illumina HiSeq 4000 (Zanthoxylum armatum)

status: Public on Dec 21 2019

organism: Zanthoxylum armatum


title: Illumina HiSeq 2000 (Ophioderma brevispina)


title: [Agilent-068823] Agilent USC-Acuigen Perkinsus olseni 15 K v 1.0 ID-068823

city: LUGO

first: Belen

middle: G

last: Pardo

state: LUGO

address: Avda. Carballo Calero s/n

department: Zoology, Genetics and Physical Anthropology

country: Spain

institute: University of Santiago de Compostela

organism: Perkinsus olseni

technology: spotted oligonucleotide

manufacturer: Agilent and Acuigen group, Dpto de Zoología, Genética y Antropología Física,Facultad Veterinaria, Campus de Lugo, Universidade de Santiago de Compostela

manufacture_protocol: We selected 10,104 sequences from our previously published P. olseni trophozoite transcriptome (Hasanuzzaman et al., 2016). A total of 9,369 sequences were selected because they were annotated to transcripts in the NCBI nr protein database, while the remaining 735 non-annotated sequences were selected by their notable differential expression in our preliminary evaluation (Hasanuzzaman et al., 2016). One oligo-probe was designed for annotated sequences (known sense) and two probes (sense and antisense) were designed for the non-annotated sequences. We also included 4,158 technical replicates for microarray reproducibility evaluation. The probes were synthesized in a random layout using the Agilent methodology.


title: Illumina HiSeq 2500 (Bacillus anthracis)

organism: Bacillus anthracis


title: Illumina HiSeq 2500 (Populus deltoides)

organism: Populus deltoides


title: Illumina HiSeq 2000 (Culex pipiens)

organism: Culex pipiens


title: Illumina HiSeq 4000 (Sus scrofa domesticus)

status: Public on Dec 17 2019

organism: Sus scrofa domesticus


title: Illumina HiSeq 2000 (Salmonella enterica subsp. enterica serovar Derby)


title: Illumina HiSeq 4000 (Papilio clytia)

organism: Papilio clytia


title: Illumina HiSeq 4000 (Atrophaneura mencius)

organism: Byasa mencius


title: Illumina NovaSeq 6000 (Astyanax mexicanus)

organism: Astyanax mexicanus


title: Phalanx Human miRNA OneArray Ver 7 (miRBase Release 21)

city: Hsinchu

first: Sandy

last: Lin

address: 6F, NO.6 Technology Road 5

department: Product Dept.

country: Taiwan

institute: Phalanx Biotech Inc

organism: Homo sapiens

distribution: commercial

manufacture_protocol: See http://www.phalanxbiotech.com/ for updated protocols


title: Agilent-072363 Human Whole Genome 8x60k Gene Expression Microarray (AMADID-72363)

status: Public on Dec 16 2019

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology


title: Illumina HiSeq 2500 (Panonychus citri)

organism: Panonychus citri


title: Illumina NovaSeq 6000 (Komagataella phaffii)

organism: Komagataella phaffii


title: Illumina HiSeq 2500 (Acinetobacter baylyi)

organism: Acinetobacter baylyi


title: Qiagen RT-PCR array MIHS-001ZA

city: Riyadh

first: Saira

last: Khalid

address: Amr Ibn Alaas street

country: Saudi Arabia

institute: King Saud University

description: miRNA PCR assay


title: Illumina NovaSeq 6000 (Meleagris gallopavo)

organism: Meleagris gallopavo


title: [Axiom_sugarray] Affymetrix Axiom Saccharum officinarum 100K SNP array

city: Gainesville

first: Jianping

last: Wang

state: Florida

address: 2033 Mowry Road

department: Agronomy

institute: University of Florida

organism: Saccharum officinarum

description:
Axiom Sugarcane 100K single nucleotide polymorphism (SNP) array

#For information about the Annotation file content, please see the bundled README file.
#%guid=0000164f-5595-4d6f-2c51-00060f007898
#%create_date=Fri Oct 28 13:34:01 2016
#%chip_type=Axiom_sugarray
#%genome-species=Axiom_sugarray.r1
#%genome-version=N/A
#%genome-version-ucsc=N/A
#%genome-version-ncbi=N/A
#%genome-version-create_date=N/A
#%dbSNP_date=N/A
#%dbSNP_version=N/A
#%hapmap-date=N/A
#%hapmap-version=N/A
#%netaffx-annotation-date=N/A
#%netaffx-annotation-netaffx-build=N/A
#%netaffx-annotation-tabular-format-version=1.0
#%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver
#%netaffx-annotation-docgen-version=cluster_friendly_submission

manufacture_protocol: see manufacturer's web site


title: Ion Torrent Proton (Canis lupus familiaris)

organism: Canis lupus familiaris


title: Illumina NextSeq 500 (Physcomitrella patens)

status: Public on Dec 15 2019

organism: Physcomitrium patens


title: Illumina NextSeq 500 (Aedes aegypti; Dirofilaria immitis)

organism:
Dirofilaria immitis
Aedes aegypti


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20st_Hs_ENTREZG_24.0.0]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: Brainarray: HuGene20st_Hs_ENTREZG_24.0.0

manufacture_protocol: See manufacturer's web site.


title: Illumina Genome Analyzer II (Phyllostachys edulis)

status: Public on Dec 13 2019

organism: Phyllostachys edulis


title: Illumina HiSeq 4000 (Exophiala dermatitidis)

status: Public on Dec 18 2019

organism: Exophiala dermatitidis


title: Illumina HiSeq 4000 (Sorghum bicolor; Xanthomonas vasicola)

organism:
Sorghum bicolor
Xanthomonas vasicola


title: Illumina HiSeq 4000 (Xanthomonas vasicola)

organism: Xanthomonas vasicola


title: Illumina HiSeq 3000 (Cupriavidus necator)

organism: Cupriavidus necator


title: Illumina HiSeq 4000 (Sorghum bicolor)

organism: Sorghum bicolor


title: [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [mogene10st_Mm_ENSG, Version 23.0.0]

status: Public on Dec 12 2019

organism: Mus musculus

relation: Alternative to: GPL6096 (official version)

manufacture_protocol: Affymetrix


title: Illumina HiSeq 2000 (Legionella pneumophila)

status: Public on Dec 11 2019

organism: Legionella pneumophila


title: Illumina HiSeq 2500 (Cristatella mucedo)

status: Public on Dec 10 2019

organism: Cristatella mucedo


title: Illumina NextSeq 500 (Dasypus novemcinctus)

organism: Dasypus novemcinctus


title: Stanford Mouse MEEBO

city: Miami

first: Juan

middle: F

last: Burgueno

address: 1011 NW 15th St, Gautier Bldg. suite 534B

institute: University of Miami

distribution: non-commercial


title: Illumina HiSeq 1500 (Rhizobium favelukesii)

organism: Rhizobium favelukesii


title: ASA-750K array

city: Nanjing

first: Peng

state: Jiangsu

address: China

department: Department of Forensic

institute: Nanjing Medical University

organism: Homo sapiens

technology: oligonucleotide beads


title: Illumina HiSeq 4000 (Sordaria macrospora)

organism: Sordaria macrospora


title: BGISEQ-500 (Oryza sativa Japonica Group)

organism: Oryza sativa Japonica Group


title: Illumina NovaSeq 6000 (Mus musculus; Pseudomonas aeruginosa UCBPP-PA14)

organism:
Mus musculus
Pseudomonas aeruginosa UCBPP-PA14


title: Arraystar LncPathTM Human Cancer Array [Agilent-080600]

city: Granada

first: Pedro

last: Medina Vico

state: Granada

address: Avenida de Fuente Nueva, s/n

department: Biochemistry and Molecular Biology I

institute: University of Granada


title: Illumina HiSeq 2000 (Lolium perenne)

status: Public on Dec 09 2019

organism: Lolium perenne


title: GT-Human-Mouse-hMSC Segmental Defect-82-v1.0

city: Atlanta

first: Andres

middle: Jose

last: Garcia

state: GA

address: 1106 IBB Building

institute: Georgia Institute of Technology

organism:
Homo sapiens
Mus musculus


title: NextSeq 550 (Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051)

organism: Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10


title: HiSeq X Ten (Ustilaginoidea virens)

organism: Ustilaginoidea virens


title: PromethION (Arabidopsis thaliana)

organism: Arabidopsis thaliana


title: Fluidigm BioMark HD high throughput system

city: Dresden

first: Stefanie

last: Reim

state: Saxony

address: Pillnitzer Platz 3a

department: Institut for Breeding Research on Fruits

country: Germany

institute: Julius Kühn Institut

organism: Malus domestica

description:
PCR assay
Dynamic Array Chip for Gene Expression

manufacturer: Fluidigm, South San Francisco, California, USA


title: Agilent-016011 Corey Whole Human Genome Oligo Microarray 4x44K (Probe Name version)

status: Public on Dec 06 2019

city: Seattle

first: Ilsa

last: Coleman

state: WA

address: 1100 Fairview Ave N, E2-112

department: Human Biology

institute: Fred Hutchinson Cancer Center

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Raybio Human Custom Cytokine Antibody Array (QAH-CUST)

city: Guangzhou

first: Huihua

last: Zhang

address: 601, west Huangpu avenue, Tianhe district

department: Biomedicine Institute & Cell Biology Department

institute: Jinan University


title: LAM Subarray 30 - Antigens 10/22/2015

city: Bronx

first: Jacqueline

last: Achkar

address: 1300 Morris Park Avenue

institute: Albert Einstein College of Medicine

technology: spotted peptide or protein

description: NA - Synthetic antigens coupled to bovine serum albumin

manufacturer: Todd Lowary, University of Alberta and Engineering Arts Tempe Arizona

manufacture_protocol: Microarray slides were printed at Engineering Arts LLC (Phoenix, AZ). BSA conjugates were noncontact printed on Schott type E slides (Schott North America, Inc., Elmsford, NY) using an Engineering Arts au301 Rainmaker microarray printer and dispensed at 100 μg/mL in buffer (1:10 phosphate-buffered saline plus 0.005% vol/vol Triton X-100). Antigens were dispensed at 360 pL per spot to produce 140- to 160-m diameter spots in triplicate. Relative humidity was maintained at 65%; slides were subjected to white light for 100% inline drop inspection. Printing was carried out in a HEPA-filtered environment at room temperature. Printed slides were stored at –20 °C until use. Each slide contains 24 identical array containing 30 components printed in duplicate.


title: NanoString Human nCounter PanCancer IO 360 Panel

status: Public on Dec 28 2019

description: The nCounter® PanCancer IO 360 Panel includes 750 genes that cover the key pathways at the interface of the tumor, tumor microenvironment, and immune response; in addition, there are 20 internal reference genes for data normalization.

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Illumina HiSeq 1500 (Octopus bimaculoides)

last: GEO

organism: Octopus bimaculoides


title: Illumina HiSeq 1500 (Ornithorhynchus anatinus)

organism: Ornithorhynchus anatinus


title: Illumina HiSeq 1500 (Lethenteron camtschaticum)

organism: Lethenteron camtschaticum


title: Illumina HiSeq 1500 (Callorhinchus milii)

organism: Callorhinchus milii


title: NextSeq 550 (Bos taurus)

organism: Bos taurus


title: [Rabbit2a520535F] Affymetrix Oryctolagus cuniculus array

city: Edinburgh

first: William

middle: P

last: Cawthorn

address: 47 Little France Crescent

department: Centre for Cardiovascular Science, The Queen's Medical Research Institute

country: United Kingdom

institute: The University of Edinburgh

organism: Oryctolagus cuniculus


title: Illumina NextSeq 500 (Cristatella mucedo)

organism: Cristatella mucedo


title: BGISEQ-500 (Klebsormidium nitens)

status: Public on Dec 04 2019

organism: Klebsormidium nitens


title: Illumina MiSeq (Salmo salar)

organism: Salmo salar


title: Illumina NovaSeq 6000 (Branchiostoma lanceolatum)

organism: Branchiostoma lanceolatum


title: Illumina MiSeq (Desulfoluna spongiiphila)

organism: Desulfoluna spongiiphila


title: HiSeq X Ten (Mycobacterium tuberculosis variant bovis)

status: Public on Dec 05 2019


title: Illumina MiSeq (Equus caballus)

organism: Equus caballus


title: HiSeq X Ten (Methanococcus maripaludis)

status: Public on Dec 03 2019

organism: Methanococcus maripaludis


title: Illumina NovaSeq 6000 (Solanum tuberosum)

organism: Solanum tuberosum


title: Illumina NovaSeq 6000 (Pseudomonas aeruginosa UCBPP-PA14)

organism: Pseudomonas aeruginosa UCBPP-PA14


title: Illumina NovaSeq 6000 (Apis mellifera)

status: Public on Dec 14 2019

organism: Apis mellifera


title: Qiagen Human NF-κB Signaling Pathway RT2 Profiler PCR Arrays

city: Duarte

first: Marcin

last: Kortylewski

state: California

address: 1500 E. Duarte Road

institute: City of Hope National Medical Center

organism: Mus musculus

description:
RT2 Profiler PCR Arrays
Human NF-κB Signaling Pathway


title: Illumina HiSeq 1500 (Monodelphis domestica)

organism: Monodelphis domestica


title: HiSeq X Ten (Oryctolagus cuniculus)


title: Illumina NextSeq 500 (Fusarium graminearum)

organism: Fusarium graminearum


title: Illumina HiSeq 4000 (Saccharolobus solfataricus)

status: Public on Dec 02 2019

organism: Saccharolobus solfataricus


title: State Key Laboratory Human LncRNA array 1858

first: Nuoqing

last: Weng

state: Guangdong

address: 651，Dongfengdong road

institute: State Key Laboratory of Oncology in South China,Sun Yat-sen University

organism: Homo sapiens

manufacture_protocol: 2412 LncRNA probes were printed onto slides using the SmartArrayerTM 136 printer (CapitalBio,Inc.,Beijing,China)


title: HiSeq X Ten (Chlorocebus aethiops)

organism: Chlorocebus aethiops


title: Ion Torrent S5 (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: Agilent-042989 Sea Bass V2 2012

status: Public on Dec 01 2019

city: Barcelona

first: Laia

last: Ribas

address: Passeig Maritim 37-49

institute: Institut de Ciencies del Mar

organism: Dicentrarchus labrax


title: Illumina HiSeq 2500 (Capsaspora owczarzaki)

organism: Capsaspora owczarzaki


title: Illumina NovaSeq 6000 (Solanum lycopersicum)

status: Public on Dec 30 2019

organism: Solanum lycopersicum


title: Agilent-022828 Shewanella oneidensis MR-1 090204MR-1GE

status: Public on Sep 19 2013

city: Hachioji

first: Atsushi

last: Kouzuma

state: Tokyo

address: 1432-1 Horinouchi

country: Japan

institute: Tokyo University of Pharmacy and Life Sciences

organism: Shewanella oneidensis MR-1

description:
Arrays of this design have barcodes that begin with 16022828 or 2522828.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 3000 (Candida albicans)

organism: Candida albicans


title: Illumina NovaSeq 6000 (Oryza sativa Japonica Group)

organism: Oryza sativa Japonica Group


title: Illumina NovaSeq 6000 (Macaca mulatta)

status: Public on Dec 21 2019

organism: Macaca mulatta


title: [MoEx-1_0-st] Affymetrix Mouse Exon 1.0 ST Array [transcript (gene) version]

status: Public on Nov 08 2007

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Wed Mar 11 17:52:08 2009 PDT
#%chip_type=MoEx-1_0-st-v1
#%lib_set_name=MoEx-1_0-st
#%lib_set_version=v1
#%genome-species=Mus musculus
#%genome-version=mm9
#%genome-version-ucsc=mm9
#%genome-version-ncbi=37
#%genome-version-create_date=2007-07
#%netaffx-annotation-date=2009-03-16
#%netaffx-annotation-netaffx-build=28

relation: Alternative to: GPL9524 (Alternative CDF)

relation: Alternative to: GPL13712 (Alternative CDF)

relation: Alternative to: GPL14363 (Alternative CDF [Brainarray Version 11.0.1, MoEx10stv1_Mm_ENSGl])

relation: Alternative to: GPL14615 (Alternative CDF [MoEx10stv1_Mm_ENST, version 13])

relation: Alternative to: GPL15251 (Alternative CDF)

relation: Alternative to: GPL15408 (Alternative CDF)

relation: Alternative to: GPL15555 (Alternative CDF [Brainarray Version 14.1.0, MoEx10stv1_Mm_ENSGl])

relation: Alternative to: GPL16682 (xmapcore Ensembl mouse version 62)

relation: Alternative to: GPL19108 (Alternative CDF)

relation: Alternative to: GPL19877 (Alternative CDF)

relation: Alternative to: GPL23148 (Alternative probe groupings)

relation: Alternative to: GPL24139 (noncoder version)

relation: Alternative to: GPL24699 (Ver. 22.0.0, MoEx10stv1_Mm_ENSG)

relation: Alternative to: GPL27901 (Ver. 23.0.0, MoEx10stv1_Mm_ENSG)

manufacture_protocol: See manufacturer's web site


title: Agilent-016011 Corey Whole Human Genome Oligo Microarray 4x44K (Feature Number version)

status: Public on Oct 18 2010