title: Illumina HiSeq 2500 (Saccharomyces bayanus; Saccharomyces cerevisiae)

status: Public on Jan 31 2020

last: GEO

country: USA

organism:
Saccharomyces bayanus
Saccharomyces cerevisiae

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 3000 (Fragaria x ananassa)

status: Public on Jan 30 2020

organism: Fragaria x ananassa


title: Illumina NextSeq 500 (Escherichia coli DH5[alpha])

organism: Escherichia coli DH5[alpha]


title: Illumina NextSeq 500 (Mycobacteroides chelonae)

organism: Mycobacteroides chelonae


title: Illumina MiSeq (Escherichia coli DH5[alpha])


title: Illumina MiSeq (Candidatus Thioglobus autotrophicus)

status: Public on Jan 29 2020

organism: Candidatus Thioglobus autotrophicus


title: Illumina NovaSeq 6000 (Withania somnifera)

organism: Withania somnifera


title: Qiagen Human Custom RT² PCR Arrays [catalog 331223]

status: Public on Feb 12 2020

city: Shenyang

first: Peng

last: Shen

state: Liaoning

address: 36 Sanhao street

country: China

institute: Shengjing Hospital of China Medical University

organism: Homo sapiens

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Agilent-021542 miRNA-v3.2-8x15K array [Feature Number]

city: San Francisco

first: Andrea

middle: J

last: Barczak

state: CA

address: 1550 4th St Rock Hall 545

institute: UCSF Sandler Center Functional Genomics Core Facility

organism:
Caenorhabditis elegans
Drosophila melanogaster
Danio rerio
Gallus gallus
Homo sapiens
Mus musculus
Rattus norvegicus

technology: in situ oligonucleotide

description:
miRNA microarray probe design, v3.2 (9/18 2008)
miRNAs (2191 targets) were taken from the Sanger miRNA database, version 12.
Total targets (excluding mismatches):
2191(miR)+14(siRNA)+24(snRNA)+30(spike-in)+30(mRNA) = 2289
hsa,mmu,dre,gga,rno,dme,cel
Arrays of this design have barcodes that begin with 16021542 or 2521542.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: InfiniumImmunoArray-24v2-0_A

city: Cork

first: Marcus

last: Claesson

address: College Road

country: Ireland

institute: University College Cork

technology: oligonucleotide beads


title: BGISEQ-500 (Lolium multiflorum)

organism: Lolium multiflorum


title: Illumina HiSeq 4000 (Pisaster ochraceus)

status: Public on Jan 28 2020

organism: Pisaster ochraceus


title: AB SOLiD 4 System (Pseudomonas aeruginosa)

organism: Pseudomonas aeruginosa


title: Illumina NextSeq 500 (Bacteroides thetaiotaomicron)

organism: Bacteroides thetaiotaomicron


title: Illumina Genome Analyzer (Pyricularia oryzae)

organism: Pyricularia oryzae


title: NextSeq 550 (Bacillus subtilis)

organism: Bacillus subtilis


title: Illumina HiSeq 2500 (Clostridium tetani)

status: Public on Jan 24 2020

organism: Clostridium tetani


title: Illumina MiSeq (Clostridium tetani)


title: SIMR Mouse 40176 MEBO2_10-9-2007

city: Kansas City

first: Chris

middle: W

last: Seidel

state: MO

department: Genomics

institute: Stowers Institute

organism: Mus musculus

technology: spotted oligonucleotide

distribution: non-commercial

manufacture_protocol: MEEBO Mouse Genome Oligator Set from Illumina (2005) was spotted at 40 uM in 3xSSC onto custom made poly-L-Lysine glass slides following standard procedures using a custom built linear servo robot (Joe Derisi, Chris Seidel).


title: Agilent-082522 Genome-wide Atlantic salmon microarray, first version Salgeno-1

status: Public on Jan 26 2020

city: Aas

first: Aleksei

last: Krasnov

address: Osloveien 1

department: Fish Health

country: Norway

institute: Nofima AS

organism: Salmo salar


title: Illumina HiSeq 4000 (Eulalia viridis)

status: Public on Jan 20 2020

organism: Eulalia viridis


title: NextSeq 550 (Macaca fascicularis; Streptococcus pyogenes)

status: Public on Jan 22 2020

organism:
Streptococcus pyogenes
Macaca fascicularis


title: NanoString Custom Panel

status: Public on Jan 21 2020

city: Copenhagen

first: Lauge Hjorth

last: Mikkelsen

address: Frederik V's Vej 11, 1st Floor

department: Pathology

country: Denmark

institute: Copenhagen University Hospital

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Illumina HiSeq 2500 (Polistes canadensis)

organism: Polistes canadensis


title: Illumina HiSeq 4000 (Anastrepha ludens)

status: Public on Jan 23 2020

organism: Anastrepha ludens


title: Illumina NextSeq 500 (Listeria monocytogenes 10403S)

status: Public on Jan 17 2020

organism: Listeria monocytogenes 10403S


title: BGISEQ-500 (Cricetulus griseus)

organism: Cricetulus griseus


title: Exiqon miRCURY LNA microRNA array; 7th generation; batch 208500-2, 208510, 208520-2; lot 35041 hsa, mmu & rno

city: Shanghai

first: Jun

last: Zhang

address: No.100 of Guilin Road

institute: Shanghai Normal University

organism: Rattus norvegicus

description:
Product=miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno
ProductDate=March 2012
ProductNumber=208500,208501,208502,208510,208520,208521,208522
LotNumberRange=35041-35041
Organism(s)=Rattus norvegicus
GalFileCreationDate=2016-12-09 09:23
ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 21.0
ArrayContents_CurrentNameColumnCoverage=Rattus norvegicus:92.03%

manufacture_protocol: See manufacturer's website: http://www.exiqon.com


title: HiSeq X Ten (Mus musculus musculus x M. m. castaneus)

status: Public on Jan 27 2020

organism: Mus musculus musculus x Mus musculus castaneus


title: NextSeq 550 (Streptococcus pyogenes)

organism: Streptococcus pyogenes


title: miScript miRNA PCR array Mouse miRNome

city: New York

first: Brian

last: Brown

state: NY

address: 1470 Madison Avenue

department: Genetics and Genomic Sciences

institute: Icahn School of Medicine at Mount Sinai

description: Product Number: 331222


title: Illumina HiSeq 2500 (Leishmania infantum; Mus musculus)

status: Public on Jan 16 2020

organism:
Leishmania infantum
Mus musculus


title: Illumina HiSeq 2500 (Acanthocheilonema viteae)

organism: Acanthocheilonema viteae


title: Illumina HiSeq 2500 (Babesia bovis)

organism: Babesia bovis


title: Illumina HiSeq 2500 (Giardia intestinalis; Homo sapiens)

organism:
Giardia duodenalis
Homo sapiens


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [gene symbol version]

status: Public on Jan 19 2020

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Homo sapiens

distribution: commercial

manufacture_protocol: See manufacturer's web site


title: RayBiotech Mouse Cytokine Array Q4000

city: Urbana

first: Aidan

last: Gilchrist

state: IL

address: 1206 W Gregory Dr., suite 2200

institute: University of Illinois at Urbana-Champaign

technology: spotted peptide or protein


title: Illumina MiSeq (Pseudomonas putida S12)

organism: Pseudomonas putida S12


title: BGISEQ-500 (Corynebacterium glutamicum)

organism: Corynebacterium glutamicum


title: Illumina HiSeq 4000 (Hordeum vulgare)

organism: Hordeum vulgare


title: Illumina NextSeq 500 (unidentified plasmid)

organism: unidentified plasmid


title: Qiagen Human Custom RT² PCR Arrays

status: Public on Jan 14 2020

first: Ming

last: He

address: No. 36 Sanhao Street

description: PCR assay


title: Illumina HiSeq 2500 (Leishmania donovani; Mus musculus)

organism:
Leishmania donovani
Mus musculus


title: Illumina HiSeq 2000 (Streptomyces hygroscopicus subsp. ascomyceticus)


title: Illumina HiSeq 2500 (Staphylococcus simiae)

organism: Staphylococcus simiae


title: miRCURY LNA™ Universal RT miRNA PCR Human panel I and II

status: Public on Jan 13 2020

city: Lodz

first: Konrad

last: Pagacz

address: Mazowiecka 15

department: Biostatistics and Translational Medicine

country: Poland

institute: Medical University of Lodz

description:
miRNA PCR assay
For 8–64 cDNA synthesis reactions: 5x RT SYBR Green Reaction Buffer, 5x RT Probe Reaction Buffer, 10x RT Enzyme Mix, UniSp6, RNA Spike-in template, RNase-Free Water


title: Illumina MiSeq (Brugia malayi; Wolbachia endosymbiont of Brugia malayi)

status: Public on Jan 15 2020

organism:
Brugia malayi
Wolbachia endosymbiont of Brugia malayi


title: nCounter MAX Analysis System Atlantic salmon 220 probes

city: Helsinki

first: Johanna

last: Kurko

state: --Please select--

address: Biocenter 1, Viikinkaari 9

country: Finland

institute: University of Helsinki

organism: Salmo salar

technology: other


title: illumina Nextseq 500 (Homo sapiens)


title: Thermo Scientific TaqMan OpenArray Real-Time PCR

city: São Paulo

first: Maristela

middle: Martins de

last: Camargo

state: SP

address: Av. Prof. Lineu Prestes 1730

department: Immunology

country: Brazil

institute: University of São Paulo

description: TaqMan® OpenArray® Real-Time PCR Plate with Gene Expression Assay


title: Ion Torrent Proton (Thioalkalivibrio nitratis)

organism: Thioalkalivibrio nitratis


title: Ion Torrent Proton (Thioalkalivibrio versutus AL 2)

organism: Thioalkalivibrio versutus AL 2


title: Illumina HiSeq 2500 (Neisseria gonorrhoeae 1291)

organism: Neisseria gonorrhoeae 1291


title: Illumina HiSeq 4000 (Mycolicibacterium smegmatis MC2 155)

organism: Mycolicibacterium smegmatis MC2 155


title: [Axiom_MDA] Applied Biosystems (Affymetrix) Axiom Microbiome Array

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: metagenomes

description: The Applied Biosystems Axiom Microbiome Array enables researchers to detect all known microorganisms in a sample with a single assay

manufacture_protocol: see manufacturer's web site


title: PacBio RS (Flaveria ramosissima)

status: Public on Jan 10 2020

organism: Flaveria ramosissima


title: Illumina HiSeq 2500 (Salix x rubra)

organism: Salix x rubra


title: Illumina NextSeq 500 (Escherichia coli O157:H7 str. Sakai)

organism: Escherichia coli O157:H7 str. Sakai


title: Illumina HiSeq 2500 (Staphylococcus capitis)

organism: Staphylococcus capitis


title: Illumina HiSeq 2500 (Bacillus megaterium)

organism: Priestia megaterium


title: Agilent-084881 Genome-wide Atlantic salmon microarray, first version Salgeno-2


title: Illumina NextSeq 500 (Spodoptera frugiperda)

organism: Spodoptera frugiperda


title: Illumina NovaSeq 6000 (Diuraphis noxia)

organism: Diuraphis noxia


title: Illumina NovaSeq 6000 (Oryzias latipes)

organism: Oryzias latipes


title: Ion Torrent Proton (Salmo salar)

status: Public on Jan 09 2020


title: Illumina HiSeq 4000 (Aspergillus fumigatus)

organism: Aspergillus fumigatus


title: [EleGene-1_1-st] Affymetrix C. elegans Gene 1.1 ST Array [transcript (gene) version]

organism: Caenorhabditis elegans

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

EleGene-1_1-st-v1.na36.ce6.transcript.csv
#%create_date=Wed Jun  1 20:19:47 2016 PDT
#%chip_type=EleGene-1_1-st-v1
#%lib_set_name=EleGene-1_1-st
#%lib_set_version=v1
#%genome-species=Caenorhabditis elegans
#%genome-version=ce6
#%genome-version-ucsc=ce6
#%genome-version-create_date=2008-05-00
#%genome-lifted-method=NONE
#%genome-lifted_from-species=Caenorhabditis elegans
#%genome-lifted_from-version-ucsc=ce6
#%netaffx-annotation-date=2016-03-15
#%netaffx-annotation-netaffx-build=36


title: Illumina NovaSeq 6000 (Trypanosoma brucei brucei)

organism: Trypanosoma brucei brucei


title: Illumina MiSeq (Bifidobacterium longum NCC2705)

organism: Bifidobacterium longum NCC2705


title: Illumina HiSeq 2500 (Pseudomonas syringae)

status: Public on Jan 08 2020

organism: Pseudomonas syringae


title: Nimblegen Pig tilling Meth 385K microarray (KC)

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

organism: Sus scrofa


title: Illumina HiSeq 2500 (Elaeis guineensis)

last: GEO

organism: Elaeis guineensis


title: [Axiom_W660K_v2] Wheat Axiom 660K Genotyping Array

status: Public on Jan 07 2020

city: YangLing

first: bai

middle: sheng

last: sheng

state: ShaanXi

address: Xi Nong Road

department: College of Agronomy

institute: 西北农林科技大学

organism: Triticum aestivum


title: HiSeq X Ten (Salix matsudana)

organism: Salix matsudana


title: BGISEQ-500 (Monomorium pharaonis)

status: Public on Jan 03 2020

organism: Monomorium pharaonis


title: Illumina MiSeq (Quercus robur)

status: Public on Jan 06 2020

organism: Quercus robur


title: Illumina HiSeq 2000 (Cladocopium goreaui)

organism: Cladocopium goreaui


title: Agilent-085375 Geobacter sulfurreducens microarray (Gsulfur_20180226; Feature Number Version)

status: Public on Jan 02 2020

city: Braunschweig

first: Rebekka

last: Biedendieck

address: Rebenring 56

department: Institute of Microbiology

country: Germany

institute: Technische Universtität Braunschweig

organism: Geobacter sulfurreducens

description:
Arrays of this design have barcodes that begin with 16085375 or 2585375.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL26003 (probe name version)


title: Illumina NovaSeq 6000 (Mycolicibacterium smegmatis MC2 155)

organism: Mycolicibacterium smegmatis MC2 155


title: NanoString nCounter Human Myeloid Innate Immunity Panel v2

organism: Homo sapiens

manufacture_protocol: See manufacturer's website (http://www.nanostring.com).


title: Illumina NovaSeq 6000 (Rangifer tarandus)

organism: Rangifer tarandus


title: Illumina HiSeq 4000 (Campylobacter jejuni)

organism: Campylobacter jejuni


title: BC015 Archaea Array

city: Princeton

first: Bess

middle: B

last: Ward

state: NJ

address: Washington Road

department: Geosciences

institute: Princeton University

organism: Archaea

manufacture_protocol:
1.The probe oligonucleotides are printed onto Corning Ultragaps or Erie Scientific Epoxy Silane slides using a DeRisi style arrayer (DiRisi et al., 1997) and pins from Parallel Synthesis.
2.The 70-mer oligo probes (Operon Technologies) were adjusted to a concentration of 0.05 mg ml-1 in 50%  DMSO and were spotted on CMT-GAPS amino silane-coated  glass slides (Corning, Corning, NY).
3. After printing, the slides were baked at 80°C for 3 h and stored in the dark at room temperature under slight vacuum in a dessicator.


title: Epinephelus coioides RT-PCR assay

city: Guangzhou

first: Jiaxing

last: Chen

state: Guangdong

address: Xingang Road No. 135, Haizhu District, Guangzhou

institute: Sun Yat-Sen University

organism: Epinephelus coioides

description: PCR assay


title: Illumina Hiseq 4000 (Mus musculus)

organism: Mus musculus


title: Croce Human tsRNA microarray

status: Public on Jan 01 2020

city: Burlington

first: Nicholas

middle: H

last: Farina

state: VT

address: 89 Beaumont Avenue

department: Biochemistry

institute: University of Vermont Cancer Center

manufacture_protocol: Carlo M. Croce laboratory, OSUMC


title: Agilent-021542 miRNA-v3.2-8x15K array

status: Public on Mar 09 2012

city: San Francisco

first: Andrea

last: Barczak

address: 1550 4th St Rock Hall 545

institute: UCSF Sandler Center Functional Genomics Core Facility

organism:
Caenorhabditis elegans
Drosophila melanogaster
Danio rerio
Gallus gallus
Homo sapiens
Mus musculus
Rattus norvegicus

relation:
Affiliated with: GPL14557
Alternative to: GPL28095


title: Illumina HiSeq 2500 (Cervus nippon)

organism: Cervus nippon


title: Agilent-029297 Human miRNA Microarray (probe name version)

status: Public on Oct 15 2014


title: [EUTOM3_exon] Affymetrix EUTOM3 tomato exon array

city: Rome

first: sarah

last: frusciante

address: Via Anguillarese 301

country: Italy

institute: ENEA Italian National Agency for New Technologies, Energy and Sustainable Development

organism: Solanum lycopersicum

description: The identifiers in the platform data table are for cDNA models which are publicly accessible at: http://solgenomics.net/

manufacture_protocol: see Affymetrix site


title: Agilent-085375 Geobacter sulfurreducens microarray (Gsulfur_20180226; Probe Name version)

description:
Arrays of this design have barcodes that begin with 16085375 or 2585375.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Probe Name.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

relation: Alternative to: GPL26004 (feature number version)


title: Agilent-084843 ETS_CRE_DNP_050617  G4125A

first: Charles

last: Vinson

address: 37 Convent Drive

department: National Cancer Institute

institute: National Institutes of Health

description:
Arrays of this design have barcodes that begin with 16084843 or 2584843

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: NextSeq 550 (Caenorhabditis elegans)

organism: Caenorhabditis elegans


title: Agilent-022978 RIKEN_Cassava (Manihot esculenta)_44k v1.0

status: Public on Jun 15 2012

city: Yokohama

first: Tetsuya

last: Sakurai

state: Kanagawa

address: 1-7-22 Suehiro-cho, Tsurumi-ku

department: Center for Sustainable Resource Science

country: Japan

institute: RIKEN

organism: Manihot esculenta

description: A total of 21,522 × 2 60-mer oligonucleotide probes were designed on the microarray.

first: Motoaki

last: Seki

first: Manabu

last: Ishitani

manufacture_protocol: Design probes by eArray, see manufacturer's web site at http://www.agilent.com/.


title: DNBSEQ-G400 (Homo sapiens)

status: Public on Jan 23 2020