title: Illumina HiSeq 3000 (Pimephales promelas)

status: Public on Feb 28 2020

last: GEO

country: USA

organism: Pimephales promelas

technology: high-throughput sequencing

distribution: virtual


title: SABiosciences Human RT^2 miRNA PCR Assay

status: Public on Apr 14 2020

city: New York City

first: Coen

last: van Solingen

state: New York

address: 435 E30th street, Science Building 723T, Science Building 723T

department: Cardiology/Medicine

institute: NYU School of Medicine

organism: Homo sapiens

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Illumina HiSeq 2000 (Pinctada fucata)

status: Public on Feb 26 2020

organism: Pinctada fucata


title: Illumina HiSeq 2000 (Laxus oneistus)

status: Public on Feb 27 2020

organism: Laxus oneistus


title: Illumina HiSeq 2000 (Flaveria ramosissima)

organism: Flaveria ramosissima


title: Illumina HiSeq 4000 (Microcebus murinus)

organism: Microcebus murinus


title: Illumina HiSeq 2000 (Carassius gibelio)

status: Public on Feb 25 2020

organism: Carassius gibelio


title: Illumina NovaSeq 6000 (Spinacia oleracea)

organism: Spinacia oleracea


title: Illumina NextSeq 500 (Sporothrix schenckii)

status: Public on Feb 24 2020

organism: Sporothrix schenckii


title: BGISEQ-500 (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina Genome Analyzer II (Saccharum hybrid cultivar)

organism: Saccharum hybrid cultivar


title: Illumina NextSeq 500 (Mus musculus; Plasmodium chabaudi)

organism:
Plasmodium chabaudi
Mus musculus


title: Illumina HiSeq 2500 (Homo sapiens; Mycobacterium tuberculosis)

status: Public on Feb 23 2020

organism:
Mycobacterium tuberculosis
Homo sapiens


title: Illumina NovaSeq 6000 (Toxoplasma gondii RH)

organism: Toxoplasma gondii RH


title: Illumina MiSeq (Mycobacterium phage LadyBird)

status: Public on Feb 21 2020

organism: Mycobacterium phage LadyBird


title: Illumina NovaSeq 6000 (Thermococcus kodakarensis)

organism: Thermococcus kodakarensis


title: Illumina HiSeq 4000 (Homo sapiens; Plasmodium berghei)

organism:
Plasmodium berghei
Homo sapiens


title: Ion Torrent Proton (Klebsiella oxytoca)

organism: Klebsiella oxytoca


title: Ion Torrent Proton (Bacillus thuringiensis)

organism: Bacillus thuringiensis


title: Agilent-028178 Mouse Promoter ChIP-on-Chip Microarray

status: Public on Feb 20 2020

city: Nagoya

first: Keisuke

last: Katsushima

address: 1 Kawasumi, Mizuho-cho, Mizuho-ku

department: Department of Epigenomics

country: Japan

institute: Nagoya City University Graduate School of Medical Sciences

organism: Mus musculus

technology: in situ oligonucleotide

description:
Arrays of this design have barcodes that begin with 16028178 or 2528178.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Probe Names.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

manufacture_protocol:
see manufacturer's web site at http://www.agilent.com/
The oligonucleotide microarray is composed of 416348 of 60 mer oligonucleotides from theAgilent Technologies oligo DNA library. Oligonucleotides were printed by Agilent Technologies.


title: BGISEQ-500 (Human alphaherpesvirus 1; Mus musculus)

status: Public on Feb 18 2020

organism:
Mus musculus
Human alphaherpesvirus 1


title: NextSeq 550 (Candida albicans SC5314)

status: Public on Feb 19 2020

organism: Candida albicans SC5314


title: Agilent-049395 P.falciparum 3D7 048998 [PROBE NAME VERSION]

city: Shanghai

first: Yilong

last: Zhang

address: No.800 Xiangying road, Yangpu Dirtrict, Shanghai, China.

department: Department of Tropical diseases,

country: China

institute: Second Military Medical University, Shanghai, China.

organism: Plasmodium falciparum

description:
P.falciparum 3D7, 6

Arrays of this design have barcodes that begin with 16049395 or 2549395.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2500 (Penicillium crustosum)

status: Public on Feb 14 2020

organism: Penicillium crustosum


title: Illumina NextSeq 500 (Saccharomyces cerevisiae; Schizosaccharomyces pombe)

organism:
Schizosaccharomyces pombe
Saccharomyces cerevisiae


title: HiSeq X Ten (Suaeda salsa)

status: Public on Feb 16 2020

organism: Suaeda salsa


title: Illumina HiSeq 2500 (Penicillium expansum)

organism: Penicillium expansum


title: Illumina HiSeq 2000 (Helianthus annuus)

organism: Helianthus annuus


title: Illumina HiSeq 1500 (Equus caballus)

status: Public on Feb 13 2020

organism: Equus caballus


title: Illumina HiSeq 2000 (Psychotria revoluta)

status: Public on Feb 11 2020

organism: Psychotria revoluta


title: Illumina Hiseq 2500 (Homo sapiens; Mus musculus)

status: Public on Feb 12 2020

organism:
Homo sapiens
Mus musculus


title: Illumina HiSeq 2000 (Cochliomyia hominivorax)

organism: Cochliomyia hominivorax


title: Illumina NextSeq 500 (Bordetella bronchiseptica)

status: Public on Feb 10 2020

organism: Bordetella bronchiseptica


title: Illumina Goat IGGC_conf_60K Genotyping BeadChip (GoatIGGC_conf_60K)

city: San Diego

last: Illumina Inc.

state: CA

address: 9885 Towne Centre Drive

institute: Illumina Inc.

organism: Capra hircus

technology: oligonucleotide beads

distribution: commercial

manufacture_protocol: See manufacturer's website


title: Illumina HiSeq 2000 (Acropora tenuis)

organism: Acropora tenuis


title: Illumina HiSeq 2000 (Acropora tenuis; Cladocopium goreaui)

organism:
Acropora tenuis
Cladocopium goreaui


title: Illumina HiSeq 2000 (Thalassiosira oceanica CCMP1005)

organism: Thalassiosira oceanica CCMP1005


title: Illumina HiSeq 4000 (Quercus ilex)

organism: Quercus ilex


title: Illumina NextSeq 500 (Rhodobacter sphaeroides 2.4.1)

organism: Cereibacter sphaeroides 2.4.1


title: Illumina NextSeq 500 (Saccharomyces cerevisiae S288C)

organism: Saccharomyces cerevisiae S288C


title: HiSeq X Ten (Homo sapiens; Pan troglodytes)

status: Public on Feb 05 2020

organism:
Pan troglodytes
Homo sapiens


title: HiSeq X Ten (Pan troglodytes)

organism: Pan troglodytes


title: NanoString nCounter [4-gene signature (MMP1, COL4A1, P4HA2 and THBS2)]

status: Public on Feb 07 2020

city: Toronto

first: Igor

last: Jurisica

state: Ontario

address: 60 Leonard Avenue

department: Krembil Research Institute

country: Canada

institute: University Health Network

organism: Homo sapiens

technology: other

description: Probes were designed for the 4-gene signature (MMP1, COL4A1, P4HA2 and THBS2) and contained one capture probe linked to biotin and one reporter probe attached to a color-coded molecular tag for each gene sequence, according to the nCounterTM code-set design.

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Agilent-084217 CapitalBio Technology Human CircRNA Array v2 [full-layout]

city: Qingdao

first: Zhi

last: Ma

address: No.308 Ningxia Rd

institute: Qingdao University

manufacture_protocol: see manufacturer's web site at: http://www.capitalbiotech.com/ProductServer.html?categoryId=50


title: Illumina HiSeq 2500 (Ursus arctos)

status: Public on Feb 06 2020

organism: Ursus arctos


title: Illumina NovaSeq 6000 (Streptomyces tsukubensis NRRL18488)

organism: Streptomyces tsukubensis NRRL18488


title: Illumina HiSeq 4000 (Streptomyces tsukubensis NRRL18488)


title: Illumina HiSeq 4000 (Plasmodium berghei)

status: Public on Feb 04 2020

organism: Plasmodium berghei


title: Illumina NovaSeq 6000 (Anas platyrhynchos)

organism: Anas platyrhynchos


title: Agilent-074334 Genotypic_EA933_Japanese_medaka_GXP_4x44K_ArrayDesign (Probe Name version)

city: Québec

first: Valerie

last: Langlios

address: 490, rue de la Couronne

institute: Institut national de la recherche scientifique

organism: Oryzias latipes

description:
Whole genome GXP of Japanese medaka. Data sourced: NCBI NW_004088048

Arrays of this design have barcodes that begin with 16074334 or 2574334.

relation: Alternative to: GPL27958 (Feature number version)


title: Illumina HiSeq 4000 (Anser cygnoides)

organism: Anser cygnoides


title: Illumina NovaSeq 6000 (Citrullus lanatus)

organism: Citrullus lanatus


title: Illumina HiSeq 2500 (Piper nigrum)

status: Public on Feb 03 2020

organism: Piper nigrum


title: Illumina HiSeq 2500 (Cairina moschata)

organism: Cairina moschata


title: NextSeq 550 (Pseudomonas fluorescens)

organism: Pseudomonas fluorescens


title: NextSeq 550 (Escherichia coli)

organism: Escherichia coli


title: Illumina HiSeq 2500 (Serratia marcescens)

status: Public on Feb 02 2020

organism: Serratia marcescens


title: NextSeq 550 (Bacillus subtilis PY79)

organism: Bacillus subtilis PY79


title: NextSeq 550 (Staphylococcus aureus)

organism: Staphylococcus aureus


title: Agilent-084494 Physcomitrella patens custom microarray (Ppatens-organella3)

status: Public on Mar 26 2019

first: Chieko

last: Sugita

state: Aichi

address: Chikusa-ku Furo-cho

department: Center for Gene Research

institute: Nagoya University

organism: Physcomitrium patens

description:
change probe ID

Arrays of this design have barcodes that begin with 16084494 or 2584494.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: [HuGene-2_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: hugene20st_Hs_ENTREZG, Brainarray version 23]

status: Public on Jul 22 2019

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: This is identical to GPL16686  but a custom CDF environment was used to extract data [Brainarray Version 23, hugene20st_23].

manufacture_protocol: See manufacturer's web site


title: NanoString nCounter® Mouse AD panel

city: Bar Harbor

first: Christoph

last: Preuss

state: ME

address: 600 Main Street

institute: The Jackson Laboratory

organism: Mus musculus


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]

status: Public on Feb 14 2013

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Homo sapiens

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

November 15, 2012: HuGene-2_0-st-v1.na33.hg19.transcript.csv

relation: Alternative to: GPL17930 (alternative CDF)

relation: Alternative to: GPL18476 (alternative CDF)

relation: Alternative to: GPL19803 (alternative CDF [hugene20st_Hs_ENTREZG, Brainarray version 18.0.0])

relation: Alternative to: GPL20103 (alternative CDF [hugene20st_Hs_ENTREZG, Brainarray version 19.0.0])

relation: Alternative to: GPL21563 (alternative CDF)

relation: Alternative to: GPL17889 (alternative CDF [HuGene20stv1_Hs_ENTREZG_16.0.0])

relation: Alternative to: GPL24989 (alternative CDF [HuGene20stv1_Hs_ENTREZG_22.0.0])

relation: Alternative to: GPL25381 (alternative CDF [HuGene20stv1_Hs_ENTREZG_21.0.0])

relation: Alternative to: GPL25483 (Gene symbol version)

relation: Alternative to: GPL26088 (alternative CDF [Hugene20st_Hs_ENST_19.0.0])

relation: Alternative to: GPL27949 (alternative CDF [HuGene20st_Hs_ENTREZG_24.0.0])

relation: Alternative to: GPL26944 (alternative CDF [hugene20st_Hs_ENTREZG, Brainarray version 23])