title: [Clariom_S_Rat] ClariomSRat_Rn_ENTREZG [BRAINARRAY package is 23.0.0]

status: Public on Jul 06 2020

city: Rennes

first: Frédéric

last: Chalmel

state: France

address: 9 avenue du Pr. Léon Bernard

department: Physiology and physiopathology of the urogenital tract

country: France

institute: Inserm U1085-Irset

organism: Rattus norvegicus

technology: in situ oligonucleotide

distribution: custom-commercial

manufacture_protocol: See manufacturer's web site


title: Agendia human array

status: Public on Apr 06 2020

city: Amsterdam

first: Wilbert

last: Zwart

state: Noord-Holland

address: Plesmanlaan 121

department: Oncogenomics

country: Netherlands

institute: Netherlands Cancer Institute

organism: Homo sapiens

manufacture_protocol: Performed by Agendia Inc.


title: Illumina HiSeq 2500 (Ochrobactrum intermedium)

status: Public on Mar 30 2020

last: GEO

country: USA

organism: Brucella intermedia

technology: high-throughput sequencing

distribution: virtual


title: Illumina MiSeq (Gluconobacter oxydans)

status: Public on Mar 31 2020

organism: Gluconobacter oxydans


title: Illumina NovaSeq 6000 (Pseudomonas aeruginosa PA14)

organism: Pseudomonas aeruginosa PA14


title: Illumina HiSeq 2000 (Shiraia bambusicola)

organism: Shiraia bambusicola


title: llumina HumanHT-12 V4.0 expression beadchip [custom probe mapping]

city: Chicago

first: Emma

last: Thompson

state: IL

address: 920 E 58th St, CLSC Rm 501

department: Human Genetics

institute: The University of Chicago

technology: oligonucleotide beads

description:
The probe mapping to genes included here was originally used in PMID 22286170.
The mapping of probe ID and chromosome position to gene ID is included in the supplementary file available at the foot of this record.

manufacture_protocol: see manufacturer's website


title: Agilent-072274 MG1363_ncRNA [Block.Column.Row ID version]

city: Groningen

first: Jhonatan

middle: Alejandro

last: HernandezValdes

address: Nijenborgh 7

department: Molecular Genetics

institute: University of Groningen

organism: Lactococcus cremoris

description:
MG1363 and ncRNA design Jan2015

Arrays of this design have barcodes that begin with 16072274 or 2572274.

Please note that the LLMGnc_* IDs are the non-coding RNAs published in van der Meulen et al., 2016;
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829306/

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina MiSeq (Apis mellifera)

organism: Apis mellifera


title: Illumina HiSeq 2500 (Microhyla fissipes)

status: Public on Mar 29 2020

organism: Microhyla fissipes


title: Agilent-085634 Danzhou_G4  G4125A

status: Public on Mar 27 2020

city: Bethesda

first: Desiree

last: Tillo

state: MD

address: 41 Center Dr, Room D310

institute: NIH/NCI

organism: synthetic construct


title: Thermo Fisher Scientific  TaqMan

city: Rotterdam

first: Hemmo

last: Drexhage

address: Dr Molewaterplein 40

department: Immunology

institute: Erasmus MC

technology: RT-PCR

description: TaqMan Gene expression Assays

manufacturer: Thermo Fisher Scientific (Applied Biosystems)


title: Illumina HiSeq 2500 (Escherichia coli str. K-12 substr. W3110)

status: Public on Mar 26 2020


title: Agilent-085039 Pf3D7v7.1_Transcriptome_apimito_v2 [Probe Name version]

status: Public on Mar 28 2020

city: Basel

first: Till

middle: Steffen

last: Voss

address: Socinstrasse 59

department: Medical Parasitology and Infection Biology

country: Switzerland

institute: Swiss Tropical and Public Health Institute

organism: Plasmodium falciparum 3D7


title: Illumina HiSeq 4000 (Escherichia coli; Pseudomonas putida KT2440)

status: Public on Mar 21 2020

organism:
Escherichia coli
Pseudomonas putida KT2440


title: Illumina HiSeq 4000 (Stylosanthes guianensis)

status: Public on Mar 23 2020

organism: Stylosanthes guianensis


title: [MtubEX1] Affymetrix Custom GeneChip Mycobacterium tuberculosis

status: Public on Mar 22 2020

city: Singapore

first: Philip

middle: Kam Weng

last: Kwan

address: 21 Lower Kent Ridge Rd

country: Singapore

institute: National University of Singapore

organism: Mycobacterium tuberculosis

manufacture_protocol: see manufacturer's web site


title: BGISEQ-500 (Pseudomonas savastanoi pv. phaseolicola 1448A)


title: Agilent-085491 neog4  G4125A


title: DanielBaughInstitute-BioMark145

city: Glassboro

first: Mary

last: Staehle

state: NJ

address: 201 Mullica Hill Road

department: Biomedical Engineering

institute: Rowan University

description:
RT-PCR on Fluidigm's 96.96 BioMark Dynamic Arrays
Custom PCR assay


title: Illumina HiSeq 2500 (Pyrus pyrifolia)

organism: Pyrus pyrifolia


title: HiSeq X Ten (Streptomyces bingchenggensis)

organism: Streptomyces bingchenggensis


title: Illumina HiSeq 2500 (Rana omeimontis)

organism: Rana omeimontis


title: Illumina NovaSeq 6000 (Fusarium graminearum)

organism: Fusarium graminearum


title: Illumina Human Infinium CoreExome-24 Genotyping BeadChip (HumanCoreExome-24 v1.0)

city: Beijing

first: Dake

last: Zhang

address: NO.1 Beichen West Road, Chaoyang District

country: China

institute: Beijing Institute of Genomics, Chinese Academy of Sciences

organism: Homo sapiens

manufacture_protocol: See manufacturer's website


title: Illumina MiSeq (unidentified soil bacteria)

organism: unidentified soil bacteria


title: Ion Torrent Proton (Gallus gallus)

organism: Gallus gallus


title: RiboBio RiboArrayTM lncDETECTTM Human Array 1×40K (A10301-1-40)

status: Public on Mar 25 2020

first: Yu

last: Yu

state: Hai Dian

institute: Peking University Health Science Center

description: lncRNA microarray


title: Illumina HiSeq 2000 (Chlamydia trachomatis)

organism: Chlamydia trachomatis


title: Illumina HiSeq 2500 (Piaractus mesopotamicus)

organism: Piaractus mesopotamicus


title: Illumina HiSeq 2500 (Piaractus mesopotamicus x Colossoma macropomum)


title: Agilent-085206 Gquad  G4125A

distribution: commercial


title: Agilent-070156 Human miRNA 8X60K Array V21.0 (Feature Number version)

status: Public on Mar 24 2020

city: Houston

first: Chad

last: Creighton

state: TX

address: One Baylor Plaza, Mail Stop: BCM305

department: Biostatistics, Ducan Cancer Center

institute: Baylor College of Medicine


title: [RJPGene-1_1-st] Affymetrix Rice (US) Gene 1.0 ST Array [transcript (gene) version]

status: Public on Mar 19 2020

city: Montpellier

first: Pascal

last: Gantet

address: Avenue Agropolis

department: IRD

institute: Université Montpellier 2

organism: Oryza sativa

description:
#%create_date=Thu Jun  2 01:05:50 2016 PDT
#%chip_type=RJpGene-1_1-st-v1
#%lib_set_name=RJpGene-1_1-st
#%lib_set_version=v1
#%genome-version=irgsp1
#%genome-version-ucsc=irgsp1
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-version-ucsc=irgsp1
#%netaffx-annotation-date=2016-03-15
#%netaffx-annotation-netaffx-build=36
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
## probeset_id refers to the transcript cluster id  not the exon level probe set  and is required for ExACT software compatibility.


title: Illumina HiSeq 2500 (Halanaerobium congolense)

organism: Halanaerobium congolense


title: Illumina HiSeq 2000 (Pecten maximus)

status: Public on Mar 17 2020

organism: Pecten maximus


title: Illumina NovaSeq 6000 (Dengue virus; Homo sapiens)

organism:
Homo sapiens
Dengue virus


title: Ion Torrent PGM (Klebsiella pneumoniae)

status: Public on Mar 20 2020

organism: Klebsiella pneumoniae


title: Illumina HiSeq 2500 (Desmophyllum pertusum)

organism: Desmophyllum pertusum


title: NanoString nCounter Elements XT

city: Munich

first: Oliver

last: Weigert

address: Max-Lebsche-Platz 30

country: Germany

institute: Experimental Leukemia and Lymphoma Research

technology: other

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Illumina NovaSeq 6000 (Dengue virus 1 Nauru/West Pac/1974; Homo sapiens)

organism:
Homo sapiens
Dengue virus 1 Nauru/West Pac/1974


title: Illumina HiSeq 2500 (Bacteroides thetaiotaomicron VPI-5482)

status: Public on Mar 16 2020

organism: Bacteroides thetaiotaomicron VPI-5482


title: Illumina HiSeq 2000 (Cronobacter sakazakii)

organism: Cronobacter sakazakii


title: Illumina HiSeq 2000 (feces metagenome)

organism: feces metagenome


title: Illumina HiSeq 2500 (Sphingomonas sp. AAP5)

organism: Sphingomonas sp. AAP5


title: Arraystar nrStar™ Human Functional LncRNA PCR Array

status: Public on Mar 15 2020

city: Shenyang

first: Yunhong

last: Zhan

address: No. 36 Sanhao Street

institute: Shengjing Hospital of China Medical University

description: qPCR assay


title: Illumina HiSeq 4000 (Juglans regia)

organism: Juglans regia


title: Illumina NextSeq 500 (Bacteroides thetaiotaomicron VPI-5482)


title: Rexxam(96 lectins) array chip

status: Public on Mar 12 2020

city: Tsu

first: Naohiro

last: Seo

state: Mie

address: 2-174 Edobashi

department: Immuno-Gene Therpy

country: Japan

institute: Mie University Graduate School of Medicine

organism: synthetic construct

technology: spotted oligonucleotide

manufacturer: National Institute of Advanced Industrial Science and Technology

manufacture_protocol:
J Biol Chem. 2011 Jun 10;286(23):20345-53. doi: 10.1074/jbc.M111.231274.
Technology applying the method of GlycoTechnica Inc. (http://www.glycotechnica.com/english/index.html)


title: 3D-Gene Mouse miRNA Oligo chip

organism: Mus musculus

manufacture_protocol: See manufacture's web site


title: NanoString nCounter Human miRGE Expression Assay Custom CodeSet [WHEL]

city: La Jolla

first: Loki

last: Natarajan

address: 3855 Health Sciences DR

institute: University of California, San Diego

organism: Homo sapiens


title: Pseudomonas putida KT2440 plus RP4 plasmid_4plex array

city: Tsukuba

first: Masatoshi

last: Miyakoshi

state: Ibaraki

address: 1-1-1 Tennoudai

institute: University of Tsukuba

organism: Pseudomonas putida KT2440

description: NimbleGen design name 080326_RDKK015_Pput_60mer_4plex, NimbleGen design ID 7374.  A expression design for 5,540 genes from Pseudomonas putida KT2440 and  plasmid RP4 with twelve 60-mer probe pairs (PM/MM) per gene.  Each probe is replicated 2 times.  The design includes random GC and other control probes.

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.


title: Illumina HiSeq 2000 (Pyrus communis)

status: Public on Mar 11 2020

last: GEO

organism: Pyrus communis


title: Illumina NextSeq 500 (Bombyx mori; Caenorhabditis elegans; Mus musculus)

organism:
Caenorhabditis elegans
Bombyx mori
Mus musculus


title: Illumina NextSeq 500 (Marmota monax)

organism: Marmota monax


title: Prime PCR LncRNA Array

first: Yong

last: Zhou

state: Liaoning

address: 4 Chongshan Road

institute: the Fourth Affiliated Hospital of China Medical University

description: qPCR assay


title: Agilent-045772  F. candida 1209_SBC [Probe Name]

status: Public on Mar 18 2020

first: Qianqian

state: (Click to Select US State)

address: Shuangqing Road

institute: Research Center for Eco-Environmental Sciences

organism: Folsomia candida


title: Illumina HiSeq 2000 (Chlorella sp. HS2)

organism: Chlorella sp. HS2


title: NanoString nCounter PanCancer Immune Profiling Panel


title: Illumina HumanHT-12 v4 Expression BeadChip [Array_Address_Id]

status: Public on Mar 14 2020

city: Tampa

first: Ozlem

last: Guzeloglu Kayisli

state: FL

address: 12901 Bruce B Down Blvd

department: Ob and Gyn

institute: University of South Florida

manufacture_protocol: See manufacturer's website.


title: Agilent-071956 custom Camellia oleifera gene expression profile chip (Probe Name version)

city: Changsha

last: Jiang

state: Hunan

address: 88 Shaoshan Road

institute: Central South University of Forestry and Technology

organism: Camellia oleifera


title: HiSeq X Ten (Setaria viridis)

status: Public on Mar 10 2020

organism: Setaria viridis


title: HiSeq X Ten (Sporobolus alterniflorus)

organism: Sporobolus alterniflorus


title: 081229_Dm_JM_ChIP_2_HX1 Drosophila melanogaster tiling array

city: Iowa City

first: David

middle: H

last: Price

state: IA

address: 500 Newton Road

department: Biochemistry and Molecular Biology

institute: University of Iowa

organism: Drosophila melanogaster

description: Roche NimbleGen and J.R. Manak designed this array set constituted of two 2.1 million feature microarrays using Genome Release 5. It contains 50-mer oligonucleotide probes with a median probe spacing of 33 bp. Repeat rich sequences such as heterochromatin and transposons were included in the design. For this reason, up to close 100 matches per sequence were tolerated.

manufacture_protocol: High-density DNA array made with with Maskless Array Synthesizer (MAS). See manufacturer's website at http://www.roche.com/.


title: 081229_Dm_JM_ChIP_1_HX1 Drosophila melanogaster tiling array


title: Illumina NovaSeq 6000 (Brassica rapa)

organism: Brassica rapa


title: Illumina NovaSeq 6000 (Fusarium solani)

organism: Fusarium solani


title: NanoString nCounter Human Custom Reporter Codeset

city: Darlinghurst

first: Jamie

middle: Ian

last: Vandenberg

state: NSW

address: 405 Liverpool Street

department: Molecular Cardiology and Biophysics

country: Australia

institute: Victor Chang Cardiac Research Institute

manufacturer: NanoString Technologies, Inc.; Seattle, WA


title: HiSeq X Ten (Sus scrofa; Toxoplasma gondii)

organism:
Toxoplasma gondii
Sus scrofa


title: Illumina NovaSeq 6000 (Conopomorpha cramerella)

status: Public on Mar 08 2020

organism: Conopomorpha cramerella


title: Illumina HiSeq 3000 (Physcomitrella patens)

organism: Physcomitrium patens


title: BGISEQ-500 (Columba livia)

organism: Columba livia


title: Fluidigm Mouse C1 PCR Assay

status: Public on Mar 07 2020

city: Stanford

first: Michael

last: Januszyk

state: CA

address: 257 Campus Dr

department: Surgery

institute: Stanford University

organism: Mus musculus

description: PCR assay


title: HiSeq X Ten (Pseudomonas savastanoi pv. phaseolicola 1448A)

status: Public on Mar 09 2020


title: Illumina HiSeq 3000 (Tetranychus urticae)

status: Public on Mar 06 2020

organism: Tetranychus urticae


title: NextSeq 550 (Schistosoma mansoni)

organism: Schistosoma mansoni


title: Illumina NovaSeq 6000 (Candida albicans)

status: Public on Mar 29 2020

organism: Candida albicans


title: Illumina HiSeq 2000 (Homo)

organism: Homo


title: Illumina HiSeq 4000 (Pseudomonas fluorescens)

status: Public on Mar 05 2020

organism: Pseudomonas fluorescens


title: HiSeq X Ten (Cryptococcus neoformans var. grubii H99)

organism: Cryptococcus neoformans H99


title: HiSeq X Ten (Toxoplasma gondii)

organism: Toxoplasma gondii


title: [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: Brainarray HuGene10stv1_Hs_REFSEQ_23.0.0]

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Homo sapiens

relation: Alternative to: GPL6244 (Alternative CDF [official])


title: [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [HuGene21st_Hs_ENTREZG_18.0.0]

description:
Brainarray: HuGene21st_Hs_ENTREZG_18.0.0
Brainarray_website: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/18.0.0/entrezg.asp


title: Illumina HiSeq 4000 (Daucus carota)

organism: Daucus carota


title: Illumina HiSeq 4000 (Bactrocera dorsalis)

status: Public on Mar 04 2020

organism: Bactrocera dorsalis


title: Exiqon miRCURY LNA microRNA array, 6th generation [miRBase v16, condensed Probe_ID version]

city: Zhengzhou

first: Ao

last: Shen

address: No. 1 Jianshe East Road

institute: First Affiliated Hospital of Zhengzhou University


title: GeoChip 3.0 [Probe-level version]

city: FIRENZE

first: Stefano

last: MOCALI

state: FI

address: VIA di Lanciola 12/a

department: AA

country: Italy

institute: CREA

organism:
Bacteria
Archaea
Fungi
Viruses


title: Fluidigm 96.96 Dynamic array IFC

city: Melboune

first: Saeedeh

last: Darzi

state: VIC

address: 27-31 Wright Street, Clayton

institute: Hudson Institute of Medical Research

description:
PCR assay
FAM-MGB, Taqman gene expression assay


title: Illumina NextSeq 500 (Drepana arcuata)

organism: Drepana arcuata


title: Illumina HiSeq 4000 (Saccharomyces cerevisiae; Schizosaccharomyces pombe)

status: Public on Mar 03 2020

organism:
Schizosaccharomyces pombe
Saccharomyces cerevisiae


title: Illumina MiSeq (Yersinia ruckeri)

organism: Yersinia ruckeri


title: NextSeq 550 (Homo sapiens; Salmonella enterica subsp. enterica serovar Typhimurium)

organism:
Homo sapiens
Salmonella enterica subsp. enterica serovar Typhimurium


title: Illumina HiSeq 4000 (Ectocarpus sp. Ec32)

organism: Ectocarpus sp. Ec32


title: HiSeq X Ten (Galleria mellonella)

organism: Galleria mellonella


title: Illumina HiSeq 2000 (Escherichia coli; Escherichia virus T4)

status: Public on Mar 02 2020

organism:
Escherichia coli
Tequatrovirus T4


title: Illumina HiSeq 4000 (Escherichia coli BL21(DE3))

organism: Escherichia coli BL21(DE3)


title: Illumina NovaSeq 6000 (Macaca fascicularis)

organism: Macaca fascicularis


title: Illumina HiSeq 2000 (Drosophila melanogaster; Homo sapiens)

organism:
Drosophila melanogaster
Homo sapiens


title: Agilent-074004 Tomato Custom Microarray Design

city: Jammu

first: Archana

last: Koul

state: J&K

address: University of Jammu

department: School of Biotechnology

country: India

institute: University of Jammu

organism: Solanum lycopersicum

description:
Tomato

Arrays of this design have barcodes that begin with 16074004 or 2574004.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: HiSeq X Ten (Metarhizium robertsii ARSEF 2575)

organism: Metarhizium robertsii ARSEF 2575


title: Illumina HiSeq 4000 (Prunus persica)

organism: Prunus persica


title: Illumina HiSeq 3000 (Synechococcus sp. WH 7803)

organism: Synechococcus sp. WH 7803


title: NextSeq 550 (Salmonella enterica subsp. enterica serovar Typhimurium)


title: Ocimum Biosolutions human oligo array (19K)

status: Public on Mar 01 2020

city: Nantes

first: Marja

last: Steenman

address: 8 quai Moncousu

institute: L'institut du thorax

organism: Homo sapiens

manufacture_protocol: Spotted on the Amersham Lucidea spotter. Epoxyslide


title: DNBSEQ-G400 (Arabidopsis thaliana)

status: Public on Mar 19 2020

organism: Arabidopsis thaliana


title: DNBSEQ-T7 (Mus musculus)

status: Public on Mar 30 2020

organism: Mus musculus


title: [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]

status: Public on Dec 05 2007

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 18, 2012: annotation table updated with netaffx build 32
July 01, 2016: annotation table updated with netaffx build 35

relation: Alternative to: GPL10063 (Alternative CDF)

relation: Alternative to: GPL10666 (Alternative CDF)

relation: Alternative to: GPL11209 (Alternative CDF)

relation: Alternative to: GPL13243 (Alternative CDF [HuGene10stv1_Hs_ENTREZG_11.0.1])

relation: Alternative to: GPL14010 (Alternative CDF)

relation: Alternative to: GPL15034 (Alternative CDF [HuGene10stv1_Hs_ENTREZG_v14])

relation: Alternative to: GPL15424 (alternative CDF [HuGene10stv1_Hs_ENST])

relation: Alternative to: GPL15648 (Alternative CDF)

relation: Alternative to: GPL15969 (Alternative CDF [HuGene1_0_genecentric])

relation: Alternative to: GPL16239 (Alternative CDF)

relation: Alternative to: GPL16332 (Alternative CDF [MMBGX-Ensembl64])

relation: Alternative to: GPL16522 (Alternative CDF [HuGene10stv1_Hs_ENTREZG_15.1.0])

relation: Alternative to: GPL16786 (Alternative CDF [HuGene10stv1_Hs_ENSG_v13.0.0])

relation: Alternative to: GPL16987 (Alternative CDF [GATExplorer_Ensembl v57])

relation: Alternative to: GPL17047 ( Alternative CDF [HuGene10stv1_Hs_ENTREZG_15.0.0])

relation: Alternative to: GPL17244 (Alternative CDF [HuGene10stv1_Hs_ENTREZG_16.0.0])

relation: Alternative to: GPL17737 (Alternative CDF)

relation: Alternative to: GPL18401 (AltAnalyze probeset-to-Ensembl)

relation: Alternative to: GPL18412 (Alternative CDF [hugene10stv1_74_030])

relation: Alternative to: GPL18695 (alternative CDF[Hugene10st_Hs_ENST_16.0.0])

relation: Alternative to: GPL19145 (Alternative CDF [hugene10st_Hs_ENSG_16.0.0])

relation: Alternative to: GPL19433 (Alternative CDF [hugene10st_Hs_ENSGvs1500.cdf])

relation: Alternative to: GPL20171 (Alternative CDF [hugene10st_Hs_ENTREZG_19.0.0])

relation: Alternative to: GPL23526 (Alternative CDF [hugene10st_Hs_ENTREZG_20])

relation: Alternative to: GPL27927 (Alternative CDF)

relation: Alternative to: GPL28228 (Alternative CDF [HuGene10stv1_Hs_REFSEQ_23.0.0])


title: Illumina NovaSeq 6000 (Callithrix jacchus)

organism: Callithrix jacchus


title: [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [transcript (gene) version]

status: Public on Sep 06 2013

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

September 06, 2013: HuGene-2_1-st-v1.na33.2.hg19.transcript.csv

relation: Alternative to: GPL19983 (Alternative CDF [HuGene21st_Hs_ENTREZG_19.0.0])

relation: Alternative to: GPL22299 (gene name version)

relation: Alternative to: GPL23961 (Alternative CDF [HuGene21st_Hs_ENTREZG_20.0.0])

relation: Alternative to: GPL28236 (Alternative CDF [HuGene21st_Hs_ENTREZG_18.0.0])


title: Illumina HumanHT-12 V4.0 expression beadchip

status: Public on Jun 17 2010

city: San Diego

last: Illumina Inc.

address: 9885 Towne Centre Drive

institute: Illumina Inc.

description:
The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectrum of experiments.

The updated content on the HumanHT-12 v4 Expression BeadChips provides more biologically meaningful results through genome-wide transcriptional coverage of well-characterized genes, gene candidates, and splice variants.

Each array on the HumanHT-12 v4 Expression BeadChip targets more than 31,000 annotated genes with more than 47,000 probes derived from the National Center for Biotechnology Information Reference Sequence (NCBI) RefSeq Release 38 (November 7, 2009) and other sources.

Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data.  These should be submitted as part of a GEOarchive.  Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html

October 11, 2012: annotation table updated with HumanHT-12_V4_0_R2_15002873_B.txt

relation: Alternative to: GPL28226 (custom probe mapping)