title: Illumina HiSeq 2500 (Cellvibrio japonicus)

status: Public on Apr 29 2020

last: GEO

country: USA

organism: Cellvibrio japonicus

technology: high-throughput sequencing

distribution: virtual


title: Agilent-074334 Genotypic_EA933_Japanese_medaka_GXP_4x44K_ArrayDesign (Feature number version)

status: Public on Apr 30 2020

city: Quebec

first: Valerie

middle: S

last: Langlois

state: QC

address: 490 rue de la Courrone

department: Centre Eau Terre Environnement

country: Canada

institute: Intitut national de la recherche scientifique (INRS)

organism: Oryzias latipes

technology: in situ oligonucleotide

description:
Whole genome GXP of Japanese medaka. Data sourced: NCBI NW_004088048

Arrays of this design have barcodes that begin with 16074334 or 2574334.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

relation: Alternative to: GPL28114 (Probe name version)

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-084561 P falciparum 15K Array

status: Public on May 16 2021

city: Barcelona

first: Elisabet

last: Tinto-Font

address: c/Rossello 153

department: Malaria

country: Spain

institute: ISGlobal

organism: Plasmodium falciparum

description:
Based on 084561

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 4000 (Streptococcus mutans)

status: Public on Apr 28 2020

organism: Streptococcus mutans


title: Illumina Genome Analyzer IIx (Brassica oleracea)

organism: Brassica oleracea


title: Illumina HiSeq 4000 (Sycon ciliatum)

status: Public on Apr 27 2020

organism: Sycon ciliatum


title: Illumina HiSeq 2500 (Musa ABB Group)

organism: Musa ABB Group


title: Illumina NovaSeq 6000 (Sycon ciliatum)


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [CDF: hta20_Hs_ENTREZG_22.0.0]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Homo sapiens

description: This array is identical to GPL17586 but a custom CDF environment was used to extract data [Brainarray Version 22, hta20_Hs_ENTREZG].

manufacture_protocol: See manufacturer's website.


title: Illumina NextSeq 500 (Faecalicatena fissicatena)

status: Public on Apr 26 2020

organism: Faecalicatena fissicatena


title: Illumina HiSeq 2000 (Penicillium roqueforti)

status: Public on Apr 23 2020

organism: Penicillium roqueforti


title: Illumina HiSeq 2000 (Bacteroides thetaiotaomicron)

organism: Bacteroides thetaiotaomicron


title: Illumina NextSeq 500 (Faecalicatena contorta)

organism: Faecalicatena contorta


title: Illumina HiSeq 2000 (Candida albicans SC5314)

organism: Candida albicans SC5314


title: Illumina MiSeq (Saccharolobus solfataricus)

status: Public on Apr 22 2020

organism: Saccharolobus solfataricus


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [CDF: hta20_Hs_ENTREZG_23.0.0]

description: This array is identical to GPL17586 but a custom CDF environment was used to extract data [Brainarray Version 23, hta20_Hs_ENTREZG].


title: MinION (Bacillus subtilis; Dengue virus; Oceanobacillus iheyensis; Saccharomyces cerevisiae)

organism:
Bacillus subtilis
Saccharomyces cerevisiae
Dengue virus
Oceanobacillus iheyensis


title: Illumina MiSeq (Human immunodeficiency virus)

status: Public on Apr 21 2020

organism: Human immunodeficiency virus


title: Illumina NovaSeq 6000 (Phyllostachys violascens)

organism: Phyllostachys violascens


title: NanoString nCounter Human Kinase Panel

status: Public on Apr 20 2020

city: Birmingham

first: Sooryanarayana

last: Varambally

state: Alabama

address: 1824 6th Avenue S

department: Pathology

institute: University of Alabama

technology: other

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Illumina MiSeq (Oryctolagus cuniculus)

organism: Oryctolagus cuniculus


title: [RabGene-1_0-st] Rabbit Gene 1.0 ST Array [transcript (gene) version]

city: Santa Clara

last: Affymetrix

state: CA

institute: Affymetrix, Inc.

description: April 12, 2020: annotation table updated with netaffx build 36

distribution: commercial

manufacture_protocol: See manufacturer's web site


title: Illumina HiSeq 4000 (Strongylocentrotus purpuratus)

organism: Strongylocentrotus purpuratus


title: BGISEQ-500 (Oryctolagus cuniculus)

status: Public on Apr 18 2020


title: [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [gene-symbol version]

city: Toronto

first: Theresa

last: Chow

state: Ontario

address: 25 Orde Street

institute: Lunenfeld Tanenbaum Research Institute

organism: Mus musculus


title: Agilent-085605 ENH_TILE_001  G4126A

city: Boston

first: Trevor

last: Siggers

state: MA

address: 24 Cummington Mall

department: Department of Biology

institute: Boston University

description:
IFNb enhanceosome
IL1b enhancer
CXCL10 promoter
6 conserved NFkB sites in NFKBIA promoter

Arrays of this design have barcodes that begin with 16085605 or 2585605

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-085920 IMM_SNP_001  G4126A

description:
IMM_SNP_001

Arrays of this design have barcodes that begin with 16085920 or 2585920

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-086248 IMM_SNP_001_CASCADE  G4125A

description:
CASCADE follow-up array to the IMM_SNP_001 array design

Arrays of this design have barcodes that begin with 16086248 or 2586248

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-052932 Aflavus_CDS_sense_130705 [Probe Name version]

status: Public on Apr 17 2020

city: Tsukuba

first: Myco

last: Umemura

state: Ibaraki

address: Higashi 1-1-1

department: Bioproduction Research Institute

country: Japan

institute: National Institute of Advanced Industrial Science and Technology (AIST)

organism: Aspergillus flavus

description:
Xhyb:AFLA_017620-AFLA_137440; AFLA_042020-AFLA_119140; AFLA_137440-AFLA_017620; AFLA_139630-AFLA_019740; AFLA_126310-AFLA_055620; AFLA_119860-AFLA_116040

Arrays of this design have barcodes that begin with 16052932 or 2552932.


title: Illumina HiSeq 2500 (Musa acuminata var. zebrina)

organism: Musa acuminata var. zebrina


title: Agilent-016088 custom human microarray [Probe Name version]

city: Valencia

first: Patricia

last: Sebastian-Leon

state: Valencia

address: EDIFICIO BIOPOLO - LA FE, Avenida Fernando Abril Martorell, 106 - Torre A, Planta 1ª

department: Genomics and Systems Reproductive Medicine

institute: IVI-RMA Foundation


title: NanoString nCounter Human Gene Expression Carolina Breast Cancer Study custom array

status: Public on Jul 16 2020

city: Houston

first: Arjun

last: Bhattacharya

state: TX

address: 1155 Pressler Street

department: Epidemiology

institute: University of Texas MD Anderson Cancer Center


title: Qiagen Human Custom RT² lncRNA qPCR Arrays

city: Shenyang

first: Wei

last: Wang

state: Liaoning

address: 155 Nanjing North Street

department: Department of Neurosurgery

country: China

institute: the First Affiliated Hospital of China Medical University

technology: RT-PCR

manufacture_protocol: see manufacturer's website; qPCR assay


title: Illumina HiSeq 2500 (Anomochloa marantoidea)

status: Public on Apr 16 2020

organism: Anomochloa marantoidea


title: Illumina HiSeq 4000 (Myotis velifer)

organism: Myotis velifer


title: Illumina NextSeq 500 (Myotis velifer)


title: Illumina HiSeq 2500 (Tradescantia fluminensis)

organism: Tradescantia fluminensis


title: Illumina HiSeq 2500 (Streptochaeta angustifolia)

organism: Streptochaeta angustifolia


title: Illumina HiSeq 2500 (Sagittaria montevidensis)

organism: Sagittaria montevidensis


title: Illumina HiSeq 2500 (Raddia brasiliensis)

organism: Raddia brasiliensis


title: Illumina HiSeq 2500 (Prosthechea radiata)

organism: Prosthechea radiata


title: Illumina HiSeq 2500 (Ananas comosus)

organism: Ananas comosus


title: Illumina HiSeq 2500 (Pharus parvifolius)

organism: Pharus parvifolius


title: Illumina HiSeq 2500 (Nymphaea colorata)

organism: Nymphaea colorata


title: Illumina HiSeq 2500 (Liriope muscari)

organism: Liriope muscari


title: Illumina HiSeq 2500 (Phoenix dactylifera)

organism: Phoenix dactylifera


title: Illumina HiSeq 2500 (Echinodorus uruguayensis)

organism: Echinodorus uruguayensis


title: Illumina MiSeq (Candidatus Kuenenia stuttgartiensis)

organism: Candidatus Kuenenia stuttgartensis


title: Illumina HiSeq 2500 (Freycinetia cumingiana)

organism: Freycinetia cumingiana


title: Illumina HiSeq 2500 (Colocasia esculenta)

organism: Colocasia esculenta


title: Illumina HiSeq 2500 (Cyperus alternifolius)

organism: Cyperus alternifolius


title: Illumina Infinium DrugDev Consortium Array (DrugDevConsortium-24v1-1)

first: George

middle: S.

last: Charames

state: ON

address: 600 University Ave, Ste 6-500

department: Pathology and Lab Medicine

institute: Mount Sinai Hospital

organism: Homo sapiens

technology: oligonucleotide beads

manufacture_protocol: See manufacturer's website


title: Illumina HiSeq 2500 (Canna indica)

organism: Canna indica


title: Illumina HiSeq 2500 (Goudaea ospinae)

organism: Goudaea ospinae


title: Illumina HiSeq 2500 (Acorus calamus)

organism: Acorus calamus


title: Illumina HiSeq 2500 (Zostera marina)

organism: Zostera marina


title: Illumina HiSeq 4000 (Arabidopsis thaliana; Moesziomyces sp. 2020a)

status: Public on Apr 14 2020

organism:
Arabidopsis thaliana
Moesziomyces sp. GD-2020a


title: Illumina HiSeq 4000 (Moesziomyces sp. 2020a)

organism: Moesziomyces sp. GD-2020a


title: Illumina NovaSeq 6000 (Cavia porcellus)

organism: Cavia porcellus


title: Illumina HiSeq 2500 (Phalaenopsis equestris)

organism: Phalaenopsis equestris


title: Agilent-085202 LC Human ceRNA array [probe name version] [circRNA version]

city: Guangzhou

first: Qi

last: Guo

address: Yanjiangxi Road

institute: Sun Yat-sen University


title: Illumina HiSeq 2500 (Kniphofia uvaria)

organism: Kniphofia uvaria


title: Illumina HiSeq 4000 (Syzygium samarangense)

status: Public on Apr 10 2020

organism: Syzygium samarangense


title: Illumina HiSeq 4000 (leaf litter metagenome)

organism: leaf litter metagenome


title: GeoChip 5.0S

city: Durham

first: Claudia

last: Gunsch

state: NC

address: 100 Science Dr

institute: Duke University

organism:
Bacteria
Archaea
Eukaryota
Viruses

manufacture_protocol: Agilent 60-mer SurePrint technology


title: Illumina HiSeq 4000 (Sesamum indicum)

status: Public on Apr 08 2020

organism: Sesamum indicum


title: Illumina HiSeq 2500 (Streptococcus gallolyticus UCN34)

status: Public on Apr 09 2020

organism: Streptococcus gallolyticus UCN34


title: nCounter Non-human Primate Immunology v2.0 chipset

city: Seattle

first: Matthew

middle: Price

last: Wood

state: WA

address: 307 Westlake Ave North

department: Global Infectious Diseases

institute: Seattle Children's Research Institute

organism: Primates

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: CodeLink Human 20k Bioarray

status: Public on Apr 15 2020

city: Charleston

first: Sakamuri

middle: V

last: Reddy

state: SC

address: 173 Ashley Avenue

department: DCRI/Pediatrics

institute: Medical University of South Carolinia

technology: spotted oligonucleotide


title: Illumina HiSeq 4000 (Albugo laibachii; Arabidopsis thaliana; Moesziomyces sp. 2020a)

last: GEO

organism:
Arabidopsis thaliana
Albugo laibachii
Moesziomyces sp. GD-2020a


title: Agilent-024712 Aspergillus nidulans chip

city: Debrecen

first: Istvan

last: Pocsi

address: Egyetem tér 1.

department: Dept.of Microbiology and Biotechnology

country: Hungary

institute: University of Debrecen

organism: Aspergillus nidulans FGSC A4

distribution: non-commercial

manufacture_protocol: Agilent 60-mer oligonucleotide high-density arrays 4644 K with 42 034 available features. Oligonucleotides were designed with the eArray software from Agilent.


title: Invitrogen ProtoArray v5.1

city: Stratford

first: Robert

middle: G

last: Nagele

state: NJ

address: 2 Medical Center Drive

department: NJISA

institute: UMDNJ-SOM

organism: Homo sapiens

technology: spotted peptide or protein

manufacture_protocol:
see manufacturer's website
https://www.thermofisher.com/order/catalog/product/PAH0525101


title: Illumina HiSeq 4000 (Sinorhizobium meliloti 2011)

organism: Sinorhizobium meliloti 2011


title: NextSeq 550 (Pseudomonas aeruginosa)

status: Public on Apr 13 2020

organism: Pseudomonas aeruginosa


title: Illumina HiSeq 2500 (Funneliformis mosseae; Oryza sativa)

organism:
Oryza sativa
Funneliformis mosseae


title: Illumina HiSeq 1500 (Caulobacter vibrioides)

status: Public on Apr 07 2020

organism: Caulobacter vibrioides


title: Illumina NextSeq 500 (Lachancea kluyveri)

organism: Lachancea kluyveri


title: TaqMan Rodent MicroRNA A  and B Array v3

city: Montpellier

first: Isabelle

last: DUROUX-RICHARD

address: 80 av Augustin Fliche

country: France

organism: Mus musculus

description:
Real time PCR assay  TLDA
TaqMan™ Rodent MicroRNA A and B Array

manufacture_protocol: see manufacturer's website


title: Illumina iSeq 100 (Rattus norvegicus)

organism: Rattus norvegicus


title: Illumina MiSeq (Phaeobacter inhibens)

status: Public on Apr 11 2020

organism: Phaeobacter inhibens


title: Yongsheng Li Lab glucose and lipid metabolism PCR panel, v2

city: Chongqing

first: Huakan

last: Zhao

state: State...

address: Xinqiao Street 183, Shapingba district

department: Clinical Medicine Research Center

institute: Xinqiao Hospital, Third Military Medical University

description: PCR assay

manufacture_protocol: Primers were designed with Primer5 software and SYBR Green II were used for specific detection. Primers were synthesized by Sangon Biotech.


title: BGISEQ-500 (Schizosaccharomyces pombe)

status: Public on Apr 06 2020

organism: Schizosaccharomyces pombe


title: Illumina HiSeq 2500 (Lassa mammarenavirus)

organism: Mammarenavirus lassaense


title: TaqMan Low Density MicroRNA Array Human Cards A and B

description:
Real time PCR assay  TLDA
MicroRNA Array Human Cards A and B


title: Illumina MiSeq (Mus musculus; Mus musculus molossinus)

organism:
Mus musculus
Mus musculus molossinus


title: Illumina HiSeq 4000 (Rhizopus stolonifer; Solanum lycopersicum)

organism:
Solanum lycopersicum
Rhizopus stolonifer


title: Illumina NextSeq 500 (Mustela putorius furo)

organism: Mustela putorius furo


title: BGISEQ-500 (Eisenia fetida)

status: Public on Apr 01 2020

organism: Eisenia fetida


title: BGISEQ-500 (Helianthus annuus)

organism: Helianthus annuus


title: Illumina HiSeq 2000 (Panicum miliaceum)

status: Public on Apr 02 2020

organism: Panicum miliaceum


title: Illumina HiSeq 4000 (Botrytis cinerea; Solanum lycopersicum)

organism:
Solanum lycopersicum
Botrytis cinerea


title: Illumina HiSeq 4000 (Fusarium acuminatum; Solanum lycopersicum)

organism:
Solanum lycopersicum
Fusarium acuminatum


title: Illumina HiSeq 4000 (Halobacterium salinarum)

status: Public on Apr 03 2020

organism: Halobacterium salinarum


title: Agilent-020717 Fusarium graminearum 4x44k

city: Ottawa

first: Linda

middle: J

last: Harris

address: 960 Carling Ave.

department: Eastern Cereal & Oilseed Research Centre

institute: Agriculture & Agri-Food Canada (AAFC)

organism: Fusarium graminearum

manufacture_protocol: SurePrint technology: Custom commercial microarrays are manufactured using a non-contact industrial inkjet printing process, in which oligo monomers are deposited uniformly onto specially-prepared glass slides. This in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. The precise inkjet process enables the delivery of extremely small, accurate volumes (picoliters) of the chemicals to be spotted. Standard phosphoramidite chemistry used in the reactions allows for very high coupling efficiencies to be maintained at each step in the synthesis of the full-length oligonucleotide. Precise quantities are reproducibly deposited “on the fly” and is achieved without stopping, to make contact with the slide surface and without introducing surface-contact feature anomalies.


title: Illumina NovaSeq 6000 (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)


title: DNBSEQ-G50 (Mus musculus)


title: FDA-EVIR GeneChip Tiling Array

city: Laurel

first: Christine

middle: Fang

last: Yu

address: 8301 Muirkirk Rd.

department: Center for Food Safety and Applied Nutrition

institute: US Food and Drug Administration

organism:
Bacillus subtilis
unidentified adenovirus
Rotavirus
Coxsackievirus
Hepatovirus A
Sapovirus
Norovirus
Astrovirus sp.
Paslahepevirus balayani

manufacture_protocol: Affymetrix


title: Agilent-020186 C.elegans v2 (GeneName version)

city: Ramat-Gan

first: Hiba

last: Waldman Ben-Asher

address: Ramat-Gan

department: Life-Sciences

country: Israel

institute: Bar-Ilan University

organism: Caenorhabditis elegans


title: Sequel (Drosophila melanogaster)

organism: Drosophila melanogaster


title: Sequel II (Drosophila melanogaster)


title: Illumina MiSeq (Populus tremula x Populus alba)

organism: Populus tremula x Populus alba


title: SOMAscan human proteomic assay [SOMAscan version 3]

status: Public on May 26 2016

city: Kodaira

first: Daimei

last: Sasayama

address: 4-1-1 Ogawahigashi-machi

institute: National Center of Neurology and Psychiatry

organism: Homo sapiens

description: SOMAmer reagents


title: Illumina NovaSeq 6000 ([Candida] auris)

organism: Candidozyma auris


title: DNBSEQ-G50 (Homo sapiens)


title: Sequel II (Homo sapiens)


title: [MoGene-2_1-st] Affymetrix Mouse Gene 2.1 ST Array [transcript (gene) version]

status: Public on Jul 02 2013

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Mus musculus

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

MoGene-2_1-st-v1.na33.2.mm10.transcript.csv
#%create_date=Thu Mar 28 17:33:46 2013 PDT
#%chip_type=MoGene-2_1-st-v1
#%lib_set_name=MoGene-2_1-st
#%lib_set_version=v1
#%genome-species=Mus musculus
#%genome-version=mm10
#%genome-version-ucsc=mm10
#%genome-version-ncbi=38
#%genome-version-create_date=2011-12-00
#%genome-lifted-method=liftOver
#%genome-lifted_from-species=Mus musculus
#%genome-lifted_from-version-ucsc=mm10
#%genome-lifted_from-version-ncbi=38
#%netaffx-annotation-date=2012-09-30
#%netaffx-annotation-netaffx-build=33

relation: Alternative to: GPL21798 (Alternative CDF)

relation: Alternative to: GPL22070 (transcript level na35ens81)

relation: Alternative to: GPL23232 (Alternative CDF [moGene21st_Mm_ENSG_19.0.0])

relation: Alternative to: GPL23972 (Alternative CDF [mogene21st_Mm_ENTREZG_21.0.0])

relation: Alternative to: GPL24115 (Alternative CDF [mogene21st_Mm_ENTREZG_22.0.0])

relation: Alternative to: GPL24707 (Alternative CDF [mogene21st_Mm_ENTREZG_19.0.0])

manufacture_protocol: see manufacturer's web site


title: DNBSEQ-G400 (Mus musculus)

status: Public on Apr 27 2020