title: Agilent-072283 EmbryoGENE Porcine DNA Methylation Array 4x180K

status: Public on Dec 23 2020

city: Québec City

first: Marc-André

last: Sirard

state: Quebec

address: Offfice 2732, 2440 Hochelaga Blvd.

department: Sciences Animales

country: Canada

institute: Université Laval

organism: Sus scrofa

technology: in situ oligonucleotide

distribution: custom-commercial


title: Illumina HiSeq 2000 (Bostrychia moritziana)

status: Public on Jul 30 2020

last: GEO

country: USA

organism: Bostrychia moritziana

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 1500 (Pisolithus microcarpus)

organism: Pisolithus microcarpus


title: BGISEQ-500 (Marchantia polymorpha)

organism: Marchantia polymorpha


title: Illumina HiSeq 4000 (Macaca nemestrina)

organism: Macaca nemestrina


title: PamChip array with 154 coregulator motifs (PamGene #88101)

status: Public on Sep 28 2020

city: RTP

first: NIEHS

last: Microarray Core

state: NC

address: 111 T.W. Alexander Drive

department: DIR

institute: NIEHS

organism: Homo sapiens

technology: spotted peptide or protein

description:
25 bp peptides
peptide array

manufacture_protocol: custom designed as described in the manuscript


title: BioMark-RTqPCR, 2

status: Public on Jan 29 2021

city: Albuquerque

first: Rajanikanth

last: Vadigepalli

state: PA

address: 1 University of New Mexico

institute: University of New Mexico

organism: Rattus norvegicus

technology: RT-PCR

description: PCR assay

manufacture_protocol: Pooled single cell samples were prepared for multiplex real-time quantitative polymerase chain reaction (RT-qPCR) with the Biomark HD system using VILO III (ThermoFisher) reverse transcription of RNA into cDNA followed by 22 cycles of pre-amplification (Taqman Pre-amp Master Mix) of the cDNA using the collection of primers that were utilized in the multiplex RT-qPCR. Each set of primers was designed to span introns when possible and was validated through in silico PCR (Primer BLAST, NCBI) and observation of a single band with the expected amplicon size on PCR gel using standard rat brain RNA. The quality of the results of the multiplex RT-qPCR was ensured through examination of the melt curves and standard curves.


title: BGISEQ-500 (Dendrobium officinale)

status: Public on Jul 29 2020

organism: Dendrobium officinale


title: Illumina HiSeq 2500 (Picochlorum sp. 'soloecismus')

status: Public on Jul 31 2020

organism: Picochlorum sp. 'soloecismus'


title: Illumina HiSeq 4000 (Solenopsis japonica)

organism: Solenopsis japonica


title: Illumina NovaSeq 6000 (Dendrocalamus latiflorus)

organism: Dendrocalamus latiflorus


title: Agilent-085631 Mus musculus lncRNA and mRNA Microarray

status: Public on Aug 04 2020

city: Xuzhou

first: Wei

last: Pan

state: Jiangsu

address: 209 Tongshan Road

country: China

institute: Xuzhou Medical University

organism: Mus musculus

description: 4*180K,Design ID:085631

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NextSeq 500 (Monodelphis domestica)

status: Public on Jul 28 2020

organism: Monodelphis domestica


title: BioMark-RTqPCR

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Agilent-086005 ASSAD_G4_D4  G4125A array

city: Bethesda

first: Desiree

last: Tillo

state: MD

address: 41 Center Dr, Room D310

institute: NIH/NCI

organism: synthetic construct


title: Illumina HiSeq 2500 (Marchantia polymorpha)


title: Ion Torrent Proton (Noccaea goesingensis)

status: Public on Jul 24 2020

organism: Noccaea goesingensis


title: Illumina HiSeq 2500 (Zea mays subsp. parviglumis)

organism: Zea mays subsp. parviglumis


title: Illumina HiSeq 3000 (Phaseolus vulgaris)

organism: Phaseolus vulgaris


title: Illumina NovaSeq 6000 (Tetranychus urticae)

organism: Tetranychus urticae


title: Illumina HiSeq 2500 (Helianthemum almeriense; Terfezia claveryi)

organism:
Terfezia claveryi
Helianthemum almeriense


title: [HT_MG-430_PM] Affymetrix HT MG-430 PM Array Plate [CDF: HTMG430PM_Mm_ENTREZG_22.0.0]

status: Public on Jul 23 2020

city: Padova

first: Silvio

last: Bicciato

address: via U. Bassi 59/b

department: Molecular Medicine

country: Italy

institute: University of Padova

description: Brainarray custom CDF HTMG430PM_Mm_ENTREZG_22.0.0

relation: Alternative to: GPL11180 (Alternative CDF [official])

manufacture_protocol: See manufacturer's web site.


title: Illumina HiSeq 2500 (Helianthemum almeriense)

organism: Helianthemum almeriense


title: Illumina HiSeq 1500 (Streptomyces albidoflavus)

organism: Streptomyces albidoflavus


title: Illumina NovaSeq 6000 (Meira miltonrushii)

status: Public on Jul 22 2020

organism: Meira miltonrushii


title: Illumina NextSeq 500 (Bifidobacterium longum subsp. infantis)

organism: Bifidobacterium longum subsp. infantis


title: Nanostring PanCancer Human IO 360 Panel

status: Public on Jul 27 2020

city: Tampa

first: Marco

last: Davila

state: FL

address: 12902 Usf Magnolia Dr

department: BMT-CI

institute: Moffitt Cancer Center and Research Institute

organism: Homo sapiens

technology: other


title: Illumina NovaSeq 6000 (Tilletiopsis washingtonensis)

organism: Tilletiopsis washingtonensis


title: Illumina NextSeq 500 (Saccharomyces sp. 'boulardii')

organism: Saccharomyces cerevisiae


title: Illumina NovaSeq 6000 (Homo sapiens; Human gammaherpesvirus 4; Human gammaherpesvirus 8)

organism:
Homo sapiens
human gammaherpesvirus 4
Human gammaherpesvirus 8


title: Illumina NovaSeq 6000 (Pseudomonas aeruginosa PAO1)

organism: Pseudomonas aeruginosa PAO1


title: Illumina NextSeq 500 (Papio anubis x Papio cynocephalus)

organism: Papio anubis x Papio cynocephalus


title: Illumina MiSeq (Acidithiobacillus ferrooxidans)

status: Public on Jul 21 2020

organism: Acidithiobacillus ferrooxidans


title: NanoString nCounter Mouse Gene Expression Neuroinflammation

status: Public on Jul 25 2020

city: Munich

first: Anja

last: Capell

state: Bavaria

address: Feodor-Lynen Str 17

department: Biomedical Center (BMC)

country: Germany

institute: Ludwig-Maximilians-University

organism: Mus musculus

distribution: commercial

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Sequel (Symbiodinium microadriaticum)

status: Public on Jul 20 2020

organism: Symbiodinium microadriaticum


title: PacBio RS II (Symbiodinium microadriaticum)


title: Illumina HiSeq 4000 (Rana pipiens)

organism: Lithobates pipiens


title: Hiseq X Ten (Homo sapiens)


title: Illumina NextSeq 500 (Clostridioides difficile 630)

organism: Clostridioides difficile 630


title: Illumina HiSeq 4000 (Francisella tularensis)

status: Public on Jul 19 2020

organism: Francisella tularensis


title: Illumina NovaSeq 6000 (Mus musculus; Mus spretus)

organism:
Mus musculus
Mus spretus


title: Illumina HiSeq 2000 (Mus musculus; Mus spretus)


title: Illumina HiSeq 2500 (Francisella tularensis subsp. novicida)

organism: Francisella tularensis subsp. novicida


title: Illumina HiSeq 2000 (Pangasianodon hypophthalmus)

organism: Pangasianodon hypophthalmus


title: Illumina HiSeq 2500 (Mus musculus; Mus spretus)


title: Illumina NextSeq 500 (Callinectes sapidus)

status: Public on Jul 16 2020

organism: Callinectes sapidus


title: Agilent-026777 Custom Human HG19 piRNA Microarray

status: Public on Jul 18 2020

city: Rockville

first: Panos

address: 9430 Key West Avenue

institute: Arraystar Inc.

description:
Agilent-026777
The ArrayStar HG19 piRNA array is designed for profiling of piRNAs in human germ cells.
ALL of the represented probes are Designed by Agilent's eArray
Sequence orientation, accuracy, and clustering assembly classification validated with Human HG19
4 X 44K slide formats printed using Agilent's 60-mer SurePrint technology


title: HiSeq X Ten (Larix kaempferi)

organism: Larix kaempferi


title: Illumina NovaSeq 6000 (Chlorocebus pygerythrus)

status: Public on Jul 17 2020

organism: Chlorocebus pygerythrus


title: Illumina HiSeq 4000 (Mycolicibacterium smegmatis)

organism: Mycolicibacterium smegmatis


title: Illumina NovaSeq 6000 (Manihot esculenta)

organism: Manihot esculenta


title: Illumina HiSeq 2000 (Helianthemum almeriense; Terfezia claveryi)

status: Public on Jul 15 2020

organism:
Terfezia claveryi
Helianthemum almeriense


title: Agilent BosTaurus 8x60k Microarray Gene Expression : AMADID: 29411

city: Bangalore

first: Arumugam

last: Kumaresan

state: Karnataka

address: Hosur Road

department: Veterinary Gynaecology and Obstetrics

country: India

institute: National Dairy Research Institute

organism: Bos taurus


title: Illumina Genome Analyzer IIx (Xanthomonas oryzae pv. oryzae)

organism: Xanthomonas oryzae pv. oryzae


title: Illumina NovaSeq 6000 (Xenopus laevis)

organism: Xenopus laevis


title: Illumina HiSeq 4000 (Plasmodium falciparum 3D7)

organism: Plasmodium falciparum 3D7


title: Illumina Infinium Global Screening Array-24 BeadChip (customizable)

city: San Diego

last: Illumina Inc.

state: CA

address: 9885 Towne Centre Drive

institute: Illumina Inc.

organism: Homo sapiens

description: An economical next-generation genotyping array that enables population-scale genetics, translational research, variant screening studies, and precision medicine research by combining highly optimized multiethnic genome-wide content, curated clinical research variants, and QC markers.  With content from a variety of resources, this multiethnic array allows researchers to detect both common and rare variants across the most commonly studied 5 superpopulations in order to impute variants in a vast number of subpopulations.  8-sample arrays with high throughput and optimized tag SNP content, including full support of copy number variation applications, designed to be highly customizable and maximally informative for studying diverse world populations.

manufacture_protocol: See manufacturer's website


title: HiSeq X Ten (Mesocricetus auratus)

organism: Mesocricetus auratus


title: Illumina HiSeq 4000 (Synechocystis sp. PCC 6803)

organism: Synechocystis sp. PCC 6803


title: Illumina NextSeq 500 (Candida albicans; Saccharomyces cerevisiae)

organism:
Saccharomyces cerevisiae
Candida albicans


title: Illumina HiSeq 2000 (Phyllanthus luciliae)

status: Public on Jul 13 2020

organism: Phyllanthus luciliae


title: Agilent-083807 Glycine max

city: Yongin

first: Yeon-Ki

last: Kim

state: Kyonggido

address: 38-2 Namdong

department: GreenGene Biotech Inc.

country: South Korea

institute: GreenGene Biotech Inc.

organism: Glycine max


title: NanoString Immune/NFkB/WNT/nucleotide excision repair pathway/angiogenesis Profiling Panel (Custom Codeset)

status: Public on Jul 14 2020

city: Bern

first: Adian

middle: F

last: Ochaenbein

address: Murtenstrasse 35

department: Department of Biomedical Research

country: Switzerland

institute: University and University Hopsital of Bern

distribution: non-commercial


title: NanoString nCounter CodeSet Ovarian Tumor Tissue Analysis (OTTA) 2014

city: Vancouver

first: Michael

middle: S

last: Anglesio

state: BC

department: Obstetrics and Gynecology

institute: University of British Columbia


title: Illumina NovaSeq 6000 (Chlorocebus sabaeus)

organism: Chlorocebus sabaeus


title: Illumina HiSeq 2500 (Eimeria tenella)

organism: Eimeria tenella


title: Illumina HiSeq 2000 (Phyllanthus conjugatus var. ducosensis)

organism: [Phyllanthus] conjugatus var. ducosensis


title: GeoChip5.0

city: Tromso

first: Brandon

middle: T

last: Hassett

address: Framstredet

department: Arctic and Marine Biology

country: Norway

institute: University of Tromso

organism:
Bacteria
Archaea
Eukaryota
Viruses

technology: spotted oligonucleotide


title: Illumina MiSeq (Severe acute respiratory syndrome coronavirus 2)


title: Illumina NovaSeq 6000 (Isodiametra pulchra)

status: Public on Jul 08 2020

organism: Isodiametra pulchra


title: Illumina HiSeq 2500 (Eimeria tenella; Gallus gallus)

organism:
Eimeria tenella
Gallus gallus


title: LSUHSC Woolard mouse gene expression v1.0

city: Shreveport

first: Matthew

last: Woolard

state: LA

address: 1501 Kings Hwy

department: Microbiology and Immunology

institute: Louisiana State University Health Science Center Shreveport

organism: Mus musculus


title: BGISEQ-500 (Monopterus albus)

status: Public on Jul 07 2020

organism: Monopterus albus


title: Illumina HiSeq 2000 (Capitella teleta)

status: Public on Jul 11 2020

organism: Capitella teleta


title: Illumina HiSeq 2500 (Auxenochlorella protothecoides)

status: Public on Jul 12 2020

organism: Auxenochlorella protothecoides


title: Illumina HiSeq 4000 (Setaria italica)

status: Public on Jul 10 2020

organism: Setaria italica


title: HiSeq X Ten (Severe acute respiratory syndrome coronavirus 2)


title: Illumina NovaSeq 6000 (Pyrus pyrifolia)

organism: Pyrus pyrifolia


title: BGISEQ-500 (Zea mays)

organism: Zea mays


title: Illumina HiSeq 2000 (Pinus densiflora)

status: Public on Jul 09 2020

organism: Pinus densiflora


title: Illumina MiSeq (Pseudomonas putida)

organism: Pseudomonas putida


title: Illumina HiSeq 2500 (Escherichia coli LF82; Homo sapiens)

organism:
Homo sapiens
Escherichia coli LF82


title: HiSeq X Ten (Middle East respiratory syndrome-related coronavirus)


title: DNBSEQ-G400 (Bos taurus)

organism: Bos taurus


title: Illumina NextSeq 500 (Breviolum minutum)

organism: Breviolum minutum


title: Illumina NovaSeq 6000 (Plutella xylostella)

organism: Plutella xylostella


title: Illumina NextSeq 500 (Salmo salar)

organism: Salmo salar


title: Illumina HiSeq 2000 (Terfezia claveryi)

organism: Terfezia claveryi


title: Illumina NextSeq 500 (Chlorocebus sabaeus; Severe acute respiratory syndrome coronavirus 2)

organism:
Chlorocebus sabaeus
Severe acute respiratory syndrome coronavirus 2


title: Thermo Fisher Scientific Human Stem Cell Panel TaqMan OpenArray RT-PCR array

city: Milan

first: Mario

last: Barilani

address: Via F. Sforza 35

institute: Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico

organism: Homo sapiens

description: PCR assay


title: Illumina iSeq 100 (Severe acute respiratory syndrome coronavirus 2)

status: Public on Jul 06 2020


title: Illumina iSeq 100 (Chlorocebus aethiops aethiops; Severe acute respiratory syndrome coronavirus 2)

organism:
Chlorocebus aethiops aethiops
Severe acute respiratory syndrome coronavirus 2


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [hugene20st_Hs_ENSG]

city: Sydney

first: Chi Nam Ignatius

last: Pang

state: NSW

address: School of Biotechnology and Biomolecular Sciences, UNSW Australia

department: The NSW Systems Biology Initiative

country: Australia

institute: The University of New South Wales

manufacture_protocol: See manufacturer's web site


title: HiSeq X Ten (Pseudomonas aeruginosa)

last: GEO

organism: Pseudomonas aeruginosa


title: Fluidigm Biomark

city: Stockholm

first: Erik

last: Sonnhammer

address: Tomtebodavagen 23A

department: Biochemistry & Biophysics

country: Sweden

institute: SciLifeLab/ Stockholm University

description:
TATAA Biocenter in Gothenburg, Sweden.
Fluidigm Real-Time PCR Analysis Software

manufacturer: 10 μl reaction volume in duplicates on a LightCycler 480 instrument (Roche)

manufacture_protocol: see Roche website


title: Illumina NovaSeq 6000 (Dicentrarchus labrax)

organism: Dicentrarchus labrax


title: Illumina NovaSeq 6000 (Dictyostelium discoideum AX4)

status: Public on Jul 04 2020

organism: Dictyostelium discoideum AX4


title: 454 GS Junior (Homo sapiens)


title: Illumina HiSeq 4000 (Dictyostelium discoideum AX4)


title: BGISEQ-500 (Platycodon grandiflorus)

status: Public on Jul 03 2020

organism: Platycodon grandiflorus


title: RPPA CORE 061515 human protein array

city: Poznań

first: Maciej

last: Wiznerowicz

address: Fredry 10

country: Poland

institute: Poznań University of Medical Sciences

description: 0104 (Set 104)


title: Qiagen Human Inflammatory Response & Autoimmunity miRNA PCR Array (MIHS-105ZA)

city: London

first: Sarah

middle: C

last: Johnson

state: London

address: Prince Consort Road

department: Bioengineering

country: United Kingdom

institute: Imperial College London

description:
PCR assay panel
The Human Inflammatory Response and Autoimmunity miScript miRNA PCR Array profiles the expression of 84 miRNAs predicted to regulate the expression of proinflammatory or antiinflammatory genes.


title: Phalanx Human lncRNA OneArray v1_mRNA (Agilent-074432)

city: Nanjing

first: Yali

last: Zhou

address: 22 Hankou Road

institute: Nanjing University

manufacture_protocol: See http://www.phalanxbiotech.com/ for updated protocols


title: AB SOLiD System 3.0 (Stylophora pistillata)

status: Public on Jul 02 2020

organism: Stylophora pistillata


title: HiSeq X Ten (Morchella importuna)

organism: Morchella importuna


title: Agilent-046066 Unrestricted Rat miRNA V19.0 [Probe Name version]

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Rattus norvegicus

description: Rat miRBase v19.0


title: Illumina HiSeq 4000 (Streptococcus suis)

organism: Streptococcus suis


title: Illumina NextSeq 500 (Homo sapiens; Severe acute respiratory syndrome coronavirus 2)

organism:
Homo sapiens
Severe acute respiratory syndrome coronavirus 2


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [gene2.0st.lncrna.genes.v21.cdf]

status: Public on Jul 01 2020

city: MILAN

first: Luca

last: Agnelli

address: Venezian 1

department: Department of Advanced Diagnostics

institute: IRCCS Istituto Nazionale dei Tumori

description:
The linked tar.gz archive is the library installation package for running analysis in R software
The linked cdf file contains 18642 Ensembl specific genes


title: Illumina NovaSeq 6000 (Cryptococcus neoformans var. neoformans)

organism: Cryptococcus deneoformans


title: Illumina HiSeq 3000 (Chlamydia trachomatis)

organism: Chlamydia trachomatis


title: IPH Breast HD Predict 2

city: Heidelberg

first: Peter

last: Sinn

address: Im Neuenheimer Feld 224

department: Pathology

institute: University of Heidelberg


title: Agilent-075482 Kidd Lab - Dog CGH Array  G4125A

city: Ann Arbor

first: Jeffrey

last: Kidd

state: Michigan

address: 1241 Catherine St

institute: University of Michigan

organism: Canis lupus familiaris

description:
Arrays of this design have barcodes that begin with 16075482 or 2575482

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (Phaseolus coccineus)

organism: Phaseolus coccineus


title: Phalanx Human miRNA OneArray v7.1


title: Agilent-053776 OE A. thaliana lncRNA Microarray

city: Shanghai

first: Xinyi

last: Hu

state: -- Select State/Province --

address: Fenglin 300

institute: CAS, Institute of Plant Physiology and Ecology (SIPPE), Shanghai Institutes for Biological Sciences (SIBS)

organism: Arabidopsis thaliana


title: NimbleGen custom Bacillus subtilis MAD-BS-2-Nimble-E-135

status: Public on Nov 28 2013

city: Amsterdam

first: Martijs

last: Jonker

address: Science Park 904

department: Microarray Department

country: Netherlands

institute: University of Amsterdam

organism: Bacillus subtilis

description: Design settings: Design based on NCBI Bacillus subtilis 168 uid57675 fasta sequence (26 jan 2011, Refseq:NC_000964.3, gi|255767013). Maximum of 135.000 probes. Design on both strands Probe length 60 bases Blast bitscore threshold of 80. Design results: 131.580 probes designed. Resulting tile-step of 32 bases. Overlap of 28 bases between probes (=gap-size -28) on opposite strands. Gap size of 4 bases between probes on the same strand. 303 Spike-in probes for 8 spike-in mRNA’s. 6.400 control probes (5000 “Alien” negative controls + 1400 Concentration Controls)

manufacture_protocol: Details on the manufacture protocol can be found on  http://www.nimblegen.com/technology/index.html


title: Illumina NextSeq 500 (Chlorocebus sabaeus)

organism: Chlorocebus sabaeus


title: Illumina NovaSeq 6000 (Glycine max)

organism: Glycine max