title: Microarrays of Enterococcus faecalis encoded tRNAs

status: Public on Apr 29 2021

city: Hamburg

first: Zoya

last: Ignatova

address: Martin -Luther-King-Platz 6

country: Germany

institute: Universitaet Hamburg

organism: Enterococcus faecalis

technology: spotted oligonucleotide

distribution: non-commercial

manufacturer: Fraunhofer Institute for Biomedical Research (Potsdam, Germany)

manufacture_protocol:
1. Oligos were arrayed in 384 well plates with a final concentration of 10 µM in 3× SSC/0.01% SDS in a total volume of 25 µl.
2. Arrays were printed onto (3-Glycidyloxypropyl)trimethoxysilane (Sigma) activated glas slides using a contact-spotter (QArray 2, Moleculare Devices).
3. After spotting arrays were incubated overnight at 4°C in a humidified atmosphere and subsequently dried for 30 min at 30°C.
4. Arrays were stored in a dry atmosphere at room temperature until use.


title: HuProt™ v2.0 19K

status: Public on Feb 20 2022

city: Padova

first: Silvio

last: Bicciato

address: via U. Bassi 59/b

department: Molecular Medicine

country: Italy

institute: University of Padova

organism: Homo sapiens

technology: spotted peptide or protein

distribution: commercial


title: Qiagen Mouse Wound healing RT2-PCR array (PAMM121-Z)

status: Public on Nov 30 2020

city: Rio de Janeiro

first: Vanessa

last: Rizzo

state: Rio de Janeiro

address: Cezar Zama St. 185

department: Biomedical Research Institute

country: Brazil

institute: Marcilio Dias Naval Hospital

organism: Mus musculus

technology: RT-PCR

description: RT-PCR assay

distribution: virtual

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Mus musculus; Oryx dammah)

last: GEO

country: USA

organism:
Mus musculus
Oryx dammah

technology: high-throughput sequencing


title: Illumina HiSeq 4000 (Vesicular stomatitis virus)

organism: Vesicular stomatitis virus


title: Illumina NovaSeq 6000 (Canis lupus familiaris; Influenza A virus (A/Puerto Rico/8/1934(H1N1)))

status: Public on Nov 27 2020

organism:
Canis lupus familiaris
Influenza A virus (A/Puerto Rico/8/1934(H1N1))


title: Illumina NovaSeq 6000 (Cicer arietinum)

organism: Cicer arietinum


title: Illumina MiSeq (Homo sapiens; Influenza A virus (A/Port Chalmers/1/1973(H3N2)))

status: Public on Nov 28 2020

organism:
Homo sapiens
Influenza A virus (A/Port Chalmers/1/1973(H3N2))


title: Illumina HiSeq 4000 (Trichophyton mentagrophytes)

organism: Trichophyton mentagrophytes


title: Agilent-041422 Zebrafish V3.1 8x60k Custom 026437

city: Liverpool

first: Philipp

last: Antczak

state: Merseyside

address: Crown Street

country: United Kingdom

institute: University of Liverpool

organism: Danio rerio

technology: in situ oligonucleotide

description:
8x60k Version of the current Agilent Zebrafish V3 array

Arrays of this design have barcodes that begin with 16041422 or 2541422.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina NovaSeq 6000 (Coturnix japonica)

organism: Coturnix japonica


title: Illumina NovaSeq 6000 (Homo sapiens; Influenza A virus (A/Puerto Rico/8/1934(H1N1)))

organism:
Homo sapiens
Influenza A virus (A/Puerto Rico/8/1934(H1N1))


title: Illumina HiSeq 2000 (Nippostrongylus brasiliensis)

organism: Nippostrongylus brasiliensis


title: HiSeq X Ten (Felis catus)

status: Public on Nov 25 2020

organism: Felis catus


title: Illumina MiniSeq (Pseudomonas aeruginosa PAO1)

organism: Pseudomonas aeruginosa PAO1


title: HiSeq X Ten (Cavia porcellus)

organism: Cavia porcellus


title: HiSeq X Ten (Mycobacterium tuberculosis H37Ra)

status: Public on Nov 26 2020

organism: Mycobacterium tuberculosis H37Ra


title: BGISEQ-500 (Staphylococcus aureus)

status: Public on Nov 24 2020

organism: Staphylococcus aureus


title: HiSeq X Five (Salmo salar)

organism: Salmo salar


title: Illumina HiSeq 4000 (Pseudomonas syringae)

organism: Pseudomonas syringae


title: Nanostring nCounter human v3 SPRINT

status: Public on Jan 10 2022

city: Milan

first: Francesco

last: Gualdrini

address: Via Adamello, 16

department: Department of Experimental Oncology

institute: European Institute of Oncology

organism: Homo sapiens

technology: other

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Illumina HiSeq 2500 (Juglans regia)

status: Public on Nov 23 2020

organism: Juglans regia


title: MinION (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina NovaSeq 6000 (Yersinia pestis)

status: Public on Nov 20 2020

organism: Yersinia pestis


title: NanoString nCounter custom codeset for Human cell RNA virus infection

status: Public on Nov 21 2020

city: Tirupati

first: Guruprasad

middle: Ramarao

last: Medigeshi

state: Andhra Pradesh

address: Panguru (G.P.), Yerpedu Mandal

department: Biology

country: India

institute: Indian Institute of Science Education and Research Tirupati

manufacture_protocol: According to the manufacturer’s protocol


title: Illumina HiSeq 4000 (Coturnix japonica)


title: Illumina HiSeq 4000 (Homo sapiens; Salmonella enterica)

status: Public on Nov 19 2020

organism:
Homo sapiens
Salmonella enterica


title: Illumina MiSeq (Salmonella enterica subsp. enterica serovar Typhi str. Ty2)


title: Illumina MiSeq (Salmonella enterica subsp. enterica serovar Typhimurium str. D23580)


title: Illumina NovaSeq 6000 (Homo sapiens; Salmonella enterica)


title: miRCURY LNA™ microRNA Array 7th Gen (Exiqon, Denmark)

city: Bengaluru

first: Supriya

last: M

state: India

address: Hosur road

institute: NIMHANS

manufacture_protocol: See Exiqon website


title: Illumina MiSeq (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2)


title: Illumina MiniSeq (Pseudomonas aeruginosa PAO1; Pseudomonas phage LUZ19)

organism:
Pseudomonas aeruginosa PAO1
Pseudomonas phage LUZ19


title: Illumina NextSeq 500 (Enterococcus faecium)

status: Public on Nov 15 2020

organism: Enterococcus faecium


title: Illumina MiSeq (Mycobacteroides abscessus)

status: Public on Nov 18 2020

organism: Mycobacteroides abscessus


title: Qiagen Human Custom RT² lncRNA qPCR Array

city: Shenyang

first: Yunhong

last: Zhan

address: No. 36 Sanhao Street

country: China

institute: Shengjing Hospital of China Medical University

manufacture_protocol: see manufacturer's website; qPCR assay


title: Qiagen Human Custom RT² lncRNA qPCR Arrays


title: Illumina NextSeq 500 (Serratia sp. ATCC 39006)

organism: Prodigiosinella confusarubida


title: NanoString Human nCounter PanCancer IO 360 Panel [CPOC]

status: Public on Nov 13 2020

city: Manchester

first: Jorge

last: Barriuso

state: Please Select

address: Wilmslow Road

department: Division of Cancer Sciences

institute: University of Manchester

manufacture_protocol: See manufacturer's website (www.nanostring.com).


title: Illumina HiSeq 4000 (Bacteroides cellulosilyticus)

organism: Bacteroides cellulosilyticus


title: NanoString nCounter neuropathology panel

city: Columbus

first: Kristina

middle: Grace

last: Witcher

state: OH

address: 460 Medical Center Dr

department: Neuroscience

institute: Ohio State University

organism: Mus musculus

manufacture_protocol:
Direct multiplexed measurement of gene expression with color-coded probe pairs
Performed at the OSUCCC Genomics Shared Resource per NanoString nCounter manufacturer specifications


title: Illumina MiSeq (gut metagenome)

status: Public on Nov 16 2020

organism: gut metagenome


title: Illumina HiSeq 2000 (Salmonella enterica subsp. enterica)

organism: Salmonella enterica subsp. enterica


title: Illumina NextSeq 500 (Fusobacterium nucleatum subsp. polymorphum ATCC 10953)

status: Public on Nov 12 2020

organism: Fusobacterium polymorphum ATCC 10953


title: HiSeq X Ten ([Candida] glabrata)

organism: Nakaseomyces glabratus


title: Illumina NextSeq 500 (Salmonella enterica subsp. enterica serovar Enteritidis)


title: Illumina NextSeq 500 (Salmonella enterica subsp. enterica)


title: Illumina HiSeq 4000 (Bacteroides oleiciplenus)

organism: Bacteroides oleiciplenus


title: Illumina NextSeq 500 (Fusobacterium nucleatum subsp. nucleatum ATCC 25586)


title: Illumina HiSeq 4000 (Aphis craccivora)

organism: Aphis craccivora


title: Illumina NextSeq 500 (Haematococcus lacustris)

organism: Haematococcus lacustris


title: Nanostring Technologies -- custom design of a CodeSet of 299 probes

city: Geneva

first: Thomas

last: Matthes

address: Rue Gabrielle Perret-Gentil

department: Hematology

country: Switzerland

institute: Geneva University Hospital

organism: Homo sapiens


title: Illumina HiSeq 4000 (Bacteroides intestinalis)

organism: Bacteroides intestinalis


title: Illumina HiSeq 2500 (Lucilia sericata)

status: Public on Nov 11 2020

organism: Lucilia sericata


title: Illumina Novaseq 6000 (Zea mays)

organism: Zea mays


title: Illumina HiSeq 2000 (Sminthopsis crassicaudata)

organism: Sminthopsis crassicaudata


title: Illumina HiSeq 1500 (Xenopus tropicalis)

organism: Xenopus tropicalis


title: Illumina HiSeq 4000 (Hoolock leuconedys)

status: Public on Nov 10 2020

organism: Hoolock leuconedys


title: Illumina NextSeq 500 (Ceratotherium simum cottoni)

organism: Ceratotherium simum cottoni


title: RT² Profiler™ PCR Array Mouse Atherosclerosis

city: Paris

first: Hafid

last: Ait-Oufella

address: 56, Rue Leblanc

country: France

institute: Inserm


title: Illumina NextSeq 500 (Hylobates moloch)

organism: Hylobates moloch


title: Illumina NextSeq 500 (Hoolock leuconedys)


title: Illumina NextSeq 500 (Symphalangus syndactylus)

organism: Symphalangus syndactylus


title: Illumina HiSeq 2500 (Bacillus amyloliquefaciens; Pseudomonas chlororaphis)

organism:
Bacillus amyloliquefaciens
Pseudomonas chlororaphis


title: Illumina HiSeq 2500 (Pseudomonas chlororaphis)

organism: Pseudomonas chlororaphis


title: NextSeq 550 (Harpegnathos saltator)

organism: Harpegnathos saltator


title: Illumina MiSeq (Leishmania infantum)

organism: Leishmania infantum


title: Illumina HiSeq 2500 (Nostoc sp. PCC 7120 = FACHB-418)

status: Public on Nov 09 2020

organism: Nostoc sp. PCC 7120 = FACHB-418


title: Illumina HiSeq 2500 (Candida albicans x Candida dubliniensis)

organism: Candida albicans x Candida dubliniensis


title: Illumina HiSeq 2500 (Candida tropicalis)

organism: Candida tropicalis


title: Illumina HiSeq 4000 (Candida dubliniensis)

organism: Candida dubliniensis


title: Illumina HiSeq 2500 (Candida dubliniensis)


title: Illumina HiSeq 4000 (Candida tropicalis)


title: Illumina NextSeq 500 (Homo sapiens; Streptococcus agalactiae)

status: Public on Nov 06 2020

organism:
Streptococcus agalactiae
Homo sapiens


title: Illumina HiSeq 2000 (Chironomus riparius)

status: Public on Nov 07 2020

organism: Chironomus riparius


title: [GuiGene-1_1-st] Affymetrix Guinea Pig Gene 1.1 ST Array [transcript (gene) version]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Cavia porcellus

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

#%create_date=Wed Jun  1 21:28:32 2016 PDT
#%chip_type=GuiGene-1_1-st-v1
#%lib_set_name=GuiGene-1_1-st
#%lib_set_version=v1
#%genome-species=Cavia porcellus
#%genome-version=cavpor3
#%genome-version-ucsc=cavpor3
#%genome-version-create_date=2012-03-01
#%genome-lifted-method=NONE
#%genome-lifted_from-species=Cavia porcellus
#%genome-lifted_from-version-ucsc=cavpor3
#%netaffx-annotation-date=2016-03-15
#%netaffx-annotation-netaffx-build=36
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster

manufacture_protocol: See manufacturer's web site


title: Illumina NovaSeq 6000 (Batrachochytrium salamandrivorans)

organism: Batrachochytrium salamandrivorans


title: SOMAscan human proteomic assay [SOMAscan version 3.2]

city: Boston

first: Jonathan

middle: M

last: Dreyfuss

state: MA

address: 1 Joslin Pl

department: Bioinformatics & Biostatistics Core

institute: Joslin Diabetes Center

organism: Homo sapiens


title: Illumina NovaSeq 6000 (Brucella suis)

status: Public on Nov 05 2020

organism: Brucella suis


title: Illumina Genome Analyzer IIx (Geobacter sulfurreducens)

organism: Geobacter sulfurreducens


title: Illumina HiSeq 2500 (Bacillus amyloliquefaciens)

organism: Bacillus amyloliquefaciens


title: Illumina NovaSeq 6000 (Oreochromis niloticus)

organism: Oreochromis niloticus


title: Illumina HiSeq 2500 (Mus musculus x Mus spretus)

status: Public on Nov 03 2020

organism: Mus musculus x Mus spretus


title: Illumina HiSeq 2000 (Sindora glabra)

status: Public on Nov 02 2020

organism: Sindora glabra


title: NimbleGen 007-01-30_HG18_5189_refseq

city: Bristol

first: Keith

middle: William

last: Brown

address: Biomedical Sciences Building, University Walk

department: School of Cellular and Molecular Medicine

institute: University of Bristol

description:
HG18
This microarray was a custom design based on the HG18 RefSeq promoter design, plus 2Mb of sequences surrounding WT1 gene and some other CpG rich sequences not covered in the standard Nimblegen chip.

manufacture_protocol: OID5189. Chr11 regions pulled from hg18_tiling database (14161 probes). Used refseq design 2006-04-28_HG18_Refseq_Promoter design, adjusted length of each region covered by %5 to make room for chr11 probes (371615 probes)


title: Illumina HiSeq 4000 (Trypanosoma brucei)

organism: Trypanosoma brucei


title: Agilent-085477 Sino Human 4x180K CeRNA Array v3

city: jinan

first: sun

last: wei

address: HuaiYin District Jingwuweiqi Road

institute: Provincial Hospital affiliated to Shandong University

description: Design ID：085477

manufacture_protocol: Agilent


title: Illumina NovaSeq 6000 (Chlorocebus sabaeus; Severe acute respiratory syndrome coronavirus 2)

organism:
Chlorocebus sabaeus
Severe acute respiratory syndrome coronavirus 2


title: Illumina NextSeq 500 (Fasciola hepatica)

organism: Fasciola hepatica


title: DNBSEQ-G50 (Rattus norvegicus)

status: Public on Nov 04 2020

organism: Rattus norvegicus


title: MI-Mouse Ready Array (MEEBO)

status: Public on Nov 01 2020

city: Fort Lauderdale

first: Lubov

last: Nathanson

state: Florida

address: 3321 College Ave.

department: INIM

institute: Nova Southeastern University

organism: Mus musculus

manufacture_protocol: see manufacturer's web site


title: NanoString nCounter Mouse Gene Expression Custom CodeSet

city: Hamilton

first: Premysl

last: Bercik

state: ON

address: 1280 Main St W

country: Canada

institute: McMaster University


title: NanoString nCounter Mouse Inflammation Panel V2 (Mm-inflam-v2)


title: MeLiM_tiling_array_SSC1

status: Public on Jul 05 2019

city: Jouy-en-Josas

first: Sylvain

last: Marthey

address: Domaine de Vilvert Bat 320

department: Animal Genetics

institute: INRA

organism: Sus scrofa

description: The MeLiM_tiling_array_SSC1  high-density oligonucleotide tiling array was design to cover both strands of the locus from 177500000 bp to 183640000bp on chr1 (Sscrofa v9.2 2009). The tiling array also contained probes covering the exons of the MITF gene, added as a positive control of expression in pig melanoma (Bourneuf et al., 2011). The reference sequences used for the design were retrieved from Ensembl database Sscrofa9.66 release (ftp://ftp.ensembl.org/pub/release-66/fasta/sus_scrofa/) including 6,140,000 nt for the chromosome 1 locus, and 64,400 nt for MITF exons.

manufacture_protocol: Maskless array synthesis was used to construct isothermal arrays. An isothermal format (Tm=76oC) and probe length constraint between 50 and 75 bp were used for probe synthesis. Each probe overlapped its neighbor by about 40 base pairs.


title: nCounter MAX/FLEX System (NanoString)

first: Barbara

last: Rehermann

state: Maryland

address: 10 Center Drive

department: Liver Diseases Branch

institute: National Institutes of Health

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: nCounter Mouse Neuroinflammation Panel

city: New York

first: Susan

last: Westfall

state: NY

address: 1468 Madison Ave, 20-02

department: Neurology

institute: Icahn School of Medicine at Mount Sinai

description:
XT-CSO-MNROl1-12
Nanostring Gene Expression Panel


title: Illumina NovaSeq 6000 (Nicotiana tabacum)

last: GEO

organism: Nicotiana tabacum


title: NanoString GeoMx Human Protein for nCounter 2020

city: Seattle

first: Jason

middle: W

last: Reeves

state: WA

address: 530 Fairview Blvd

department: R&D

institute: Nanostring

manufacture_protocol: The nCounter readout protein hybridization panel was applied using a combination of commercially available and pre-commercial development reagent kits. The following GeoMx human protein panels were used: Immune Cell Profiling Core v1.0, IO Drug Target Module v1.0, Immune Cell Typing Module v1.0, Immune Activation Status Module v1.0, PI3K/AKT Signaling Module v0.9, MAPK Signaling Module v0.9, and the Cell Death Modules v0.9. All v0.9 modules are pre-commercial development reagents, used through early access programs. More information is available at nanostring.com