title: Mouse Autoantigen Microarray [Microarray & Immune Phenotyping Core Facility - UT Southwestern Medical Center]

status: Public on Jan 25 2021

city: Dallas

first: Chengsong

last: Zhu

state: TX

address: 5323 Harry Hines Blvd

department: Immunology

country: USA

institute: UT Southwestern Medical Center

organism: Mus musculus

technology: antibody

distribution: non-commercial

manufacturer: Microarray & Immune Phenotyping Core Facility of University of Texas Southwestern Medical Center


title: Illumina NovaSeq 6000 (Helianthus annuus)

status: Public on Dec 31 2020

last: GEO

organism: Helianthus annuus

technology: high-throughput sequencing

distribution: virtual


title: EmArray Cyto6000 Version 2

city: Atlanta

first: David

middle: H

last: Ledbetter

state: GA

address: 615 Michael St

department: Department of Human Genetics

institute: Emory University School of Medicine

organism: Homo sapiens

technology: spotted oligonucleotide

description: The EmArray Cyto6000 is a custom oligonucleotide microarray that is designed to detect gains and losses across the genome by combining targeted and genome-wide array analyses. The array contains high density coverage for clinically relevant deletion/duplication syndromes and the telomere and pericentromeric regions. In addition, it also contains genome-wide coverage with an average probe spacing of ~75 kb. The array is designed to detect gains or losses at a minimum of 500 kb across the genome, or smaller for regions of known microdeletion/duplication syndromes or targeted genes. The array was built using a commercial platform (Agilent Technologies) and contains approximately 44,000 oligonucleotides (60mers) that represent coding and noncoding human sequences in the genome (content sourced from the UCSC hg17 human genome: NCBI build 35, May 2004).

distribution: custom-commercial

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: NimbleGen_Botrytis_4plex [091204_Botrytis_v2_expr_X4]

city: VILLEURBANNE

first: MATHIAS

last: CHOQUER

address: 10, rue Raphaël Dubois

country: France

institute: UNIVERSITE LYON1

organism: Botrytis cinerea

description:
4plex expression design for Botrytis.  Three probes per gene (9559 RANDOM probes + 62478 probes covering 20885 gene models); Probe length: 60 mers. The .ndf and .ncd files are linked below as supplementary files.
native array description file: 091204_Botrytis_v2_expr.ndf
native array description file: 091204_Botrytis_v2_expr_X4.ncd

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology.


title: Illumina NovaSeq 6000 (Homo sapiens; Oryctolagus cuniculus)

organism:
Homo sapiens
Oryctolagus cuniculus


title: AnyGenes Rat Liver Cancer Signaling Pathways Profiler

status: Public on Dec 30 2020

city: Barcelona

first: Christian

middle: Griñán

last: Ferré

state: Barcelona

address: Joan XIII, s/n

department: Pharmacology, Toxicology and Therapeutic Chemistry

country: Spain

institute: University of Barcelona

organism: Rattus norvegicus

technology: RT-PCR

description:
PCR assay
AnyGenes Liver Cancer Product ref LIC1R1

manufacture_protocol: see manufacturer's website


title: ThermoFisher Human Single Genomechanics PCR Array

first: Katherine

middle: Monnet

last: Young

address: 315 Ferst Dr. NW

department: Biomedical Engineering

institute: Georgia Institute of Technology

description: PCR assay

manufacture_protocol: A list of genes of interest was curated from various published sources and experimental comparisons of gene expression between cell lines of varying metastatic potential. Designs for these 96 genes of interest were collected from previously published studies, choosing primer sets that were expected to produce a product between 70 and 310 base pairs long as predicted by the Basic Local Alignment Search Tool (BLAST).


title: Illumina HiSeq 1500 (Hydra vulgaris)

status: Public on Dec 28 2020

organism: Hydra vulgaris


title: Agilent-085202 LC Human ceRNA array [probe name version] [lncRNA version]

status: Public on Dec 29 2020

city: Guangzhou

first: Qi

last: Guo

address: Yanjiangxi Road

country: China

institute: Sun Yat-sen University

technology: in situ oligonucleotide

first: Junjie

last: Wang

first: Runlu

last: Sun

first: Wenli

last: Gu

first: Zhijian

last: He

first: Qian

last: Chen

first: Wenhao

last: Liu

first: Yangxin

first: Jingfeng

first: Yuling

last: Zhang

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Agilent-084492 C. familiaris miRNA

city: Serdang

first: Gayathri

middle: Thevi

last: Selvarajah

state: Selangor

address: University Putra Malaysia

department: Faculty of Veterinary Medicine

country: Malaysia

institute: University Putra Malaysia

organism: Canis lupus familiaris


title: NCAUR-ARS-USDA Yeast genome 70-mer DNA oligo array Sc6388

city: Peoria

first: Z Lewis

state: IL

address: 1815 N University

institute: USDA-ARS

organism: Saccharomyces cerevisiae

manufacture_protocol:
Custum design following Liu and Slininger (2007) J. Microbiol Methods 68:486-496
1. 70-mer universal RNA controls were synthesized with AminoC6 modification at the 5' end
2. Oligos are stored in Greiner 384-well flat-bottom plates. Each well contains 600 pmol of 70-mer oligo.
3. Oligos stored at -80?
4. Allow oligos to thaw at room temperature
5. Shake plate for 1 min
6. Centrifuge plates at 2500 rpm for 1 min
7. Remove seals and cover with plate lids
8. Load the plates in a proper order onto a plate tower
9. Array design with triplicated genome in separated blocks
10.Microarray spotting with a humidifier to keep constant moisture in the chamber
11. Array platform is properly leveled and examined for each direction
12. Printing pins washed with sonication to avoid sample contamination carry over


title: Agilent-054169 Drosophila_60k_130714 021791

status: Public on Jun 22 2021

city: clermont ferrand

first: yoan

last: renaud

address: place henri dunand

institute: igred

organism: Drosophila melanogaster

description:
based on 44k catalog
Arrays of this design have barcodes that begin with 16054169 or 2554169.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: nrStar Human tRF&tiRNA PCR Array

city: Shenyang City

first: Zhenning

address: 155 North Nanjing Street

department: Department of Surgical Oncology and General Surgery

institute: The First Affiliated Hospital of China Medical University

description: PCR assay


title: University of Warwick Yeast ORF array

city: Torino

first: Irene

last: Stefanini

address: via Accademia Albertina

country: Italy

institute: University of Turin

technology: spotted DNA/cDNA


title: BGISEQ-500 (Paralichthys olivaceus)

status: Public on Dec 26 2020

organism: Paralichthys olivaceus


title: miRCURY LNA microRNA Array, v. 9.2

city: Genoa

first: Adriana

middle: Agnese

last: Amaro

address: Largo Rosanna Benzi 10

department: Molecular Pathology

institute: IRCCS Ospedale Policlinico SAN MARTINO - IST - NATIONAL CANCER RESEARCH INSTITUTE

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 3000 (Dictyostelium discoideum)

last: GEO

organism: Dictyostelium discoideum


title: Sequel (Homo sapiens; Human alphaherpesvirus 1)

organism:
Homo sapiens
Human alphaherpesvirus 1


title: HiSeq X Ten (Selaginella nipponica)

organism: Selaginella nipponica


title: Illumina HiSeq 2000 (Citrus jambhiri)

organism: Citrus jambhiri


title: Proteomic Comparison Of DSRCT, Normal Mesenteric Tissues and ES

city: Houston

first: Joseph

middle: A.

last: Ludwig

state: Texas

department: Sarcoma Medical Oncology

institute: UT-MD-Anderson Cancer Center

technology: spotted peptide or protein


title: Illumina NextSeq 500 (Methylorubrum extorquens)

organism: Methylorubrum extorquens


title: Illumina NovaSeq 6000 (Bombina orientalis)

organism: Bombina orientalis


title: [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [hugene21st_Hs_ENSG_20.0.0]

status: Public on Dec 24 2020

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

http://mbni.org/customcdf/20.0.0/ensg.download/hugene21st_Hs_ENSG_20.0.0.zip

distribution: commercial

manufacture_protocol: See manufacturer's web site


title: Illumina HiSeq 2000 (Schizosaccharomyces octosporus)

organism: Schizosaccharomyces octosporus


title: Illumina HiSeq 2000 (Lachancea waltii)

organism: Lachancea waltii


title: Illumina HiSeq 2000 (Saccharomyces bayanus)

organism: Saccharomyces bayanus


title: Illumina HiSeq 2000 (Schizosaccharomyces japonicus)

organism: Schizosaccharomyces japonicus


title: GeoChip 5.0

first: Lijuan

last: Ren

address: 601 Huangpu Avenue West, Guangzhou, China

institute: JinanUniversity

organism:
Bacteria
Archaea
Eukaryota
Viruses


title: Agilent-071137 SurePrint G3 Custom GE 8x60K microarray (Probe name version)

status: Public on Dec 25 2020

city: Jouy-en-Josas

first: Cyprien

last: Guérin

address: INRAE - Domaine de Vilvert

institute: INRAE

organism: Flavobacterium psychrophilum

description:
Agilent-071137 THC0290_20141113 071120

High density Flavobacterium psychrophilum THC0290 expression chip designed from initial annotation, new regions and TSS predictions

Arrays of this design have barcodes that begin with 16071137 or 2571137.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina MiSeq (Escherichia coli KRX)

status: Public on Dec 21 2020

organism: Escherichia coli KRX


title: Phalanx CytoOneArray v2.24

city: Hsinchu

first: Sandy

last: Lin

address: 6F, NO.6 Technology Road 5

department: Product Dept.

country: Taiwan

institute: Phalanx Biotech Inc

organism: Homo sapiens

manufacture_protocol: See https://www.phalanx.com.tw/ for updated protocols


title: Illumina MiSeq (Oidiodendron maius Zn)

status: Public on Dec 23 2020

organism: Oidiodendron maius Zn


title: Illumina MiniSeq (Staphylococcus aureus subsp. aureus USA300)

status: Public on Dec 22 2020


title: Illumina HiSeq 2500 (Neovison vison)

organism: Neogale vison


title: Illumina HiSeq 4000 (Homo sapiens; Human alphaherpesvirus 1)


title: Phalanx CytoOneArray v3.01


title: Illumina HiSeq 3000 (Streptococcus anginosus)

organism: Streptococcus anginosus


title: NanoStrings Technologies® nCounter®

city: New York

first: Stefanie

middle: G

last: Wohl

state: NY

address: 33w 42nd Street

department: Biological and Vision Sciences

institute: SUNY Optometry

organism: Mus musculus

technology: other

manufacture_protocol:
http://www.nanostring.com/
digital color-coded barcode technology, insitu-nucleotide


title: Illumina NovaSeq 6000 (Staphylococcus aureus subsp. aureus USA300)


title: Illumina HiSeq 2500 (Trachinotus blochii)

organism: Trachinotus blochii


title: Illumina HiSeq 2500 (Acinetobacter baumannii ATCC 17978)

organism: Acinetobacter baumannii ATCC 17978


title: Antigen Discovery Inc. Multipathogen (Gen 1) Protein Microarray

city: Irvine

middle: John

last: Campo

state: CA

address: 1 Technology Dr., STE E309

institute: Antigen Discovery, Inc.

organism:
Bordetella pertussis
Staphylococcus aureus
Streptococcus sp. 'group B'
Mycobacterium tuberculosis
Plasmodium falciparum
Onchocerca volvulus
Yellow fever virus
Dengue virus
Human immunodeficiency virus
Respiratory syncytial virus
Chikungunya virus
Zika virus

description: organism: Multiple pathogens


title: Illumina MiSeq (Caldicellulosiruptor bescii DSM 6725)

status: Public on Dec 18 2020

organism: Caldicellulosiruptor bescii DSM 6725


title: HiSeq X Ten (Xanthomonas oryzae pv. oryzae)

status: Public on Dec 17 2020

organism: Xanthomonas oryzae pv. oryzae


title: Illumina HiSeq 2500 (Plasmodium falciparum NF54)

organism: Plasmodium falciparum NF54


title: Ion Torrent Proton (Solanum tuberosum)

status: Public on Dec 16 2020

organism: Solanum tuberosum


title: Illumina HiSeq 2000 (Streptococcus mutans)

status: Public on Dec 15 2020

organism: Streptococcus mutans


title: Illumina HiSeq 4000 (Bacillus subtilis)

status: Public on Dec 20 2020

organism: Bacillus subtilis


title: Sequel II (Marchantia polymorpha subsp. ruderalis)

status: Public on Dec 14 2020

organism: Marchantia polymorpha subsp. ruderalis


title: Illumina HiSeq 2500 (Neochloris aquatica)

organism: Neochloris aquatica


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENSG_V22]

city: Maastricht

first: Danyel

last: Jennen

address: Universiteitssingel 40

department: Toxicogenomics

country: Netherlands

institute: Maastricht University

description: Ensembl gene IDS from the Brainarray customCDF version 22 of Affymetrix GeneChip Human Genome U133 Plus 2.0 Array (available here: http://mbni.org/customcdf/22.0.0/ensg.download/HGU133Plus2_Hs_ENSG_22.0.0.zip)

relation: Alternative to: GPL570 (Alternative CDF [official])

manufacture_protocol: Refer to Affymetrix manufacture protocol for HG-U133 Plus 2.0 array.


title: MinION (Staphylococcus aureus)

status: Public on Dec 10 2020

organism: Staphylococcus aureus


title: NanoString PanCancer Immune Panel with customized codesets

city: Buffalo

first: Song

last: Yao

address: Elm and Carlton Streets

department: Cancer Prevention and Control

institute: Roswell Park Comprehensive Cancer Center

organism: Homo sapiens


title: HiSeq X Ten (Chlorella variabilis)

organism: Chlorella variabilis


title: AB 5500 Genetic Analyzer (Bradyrhizobium diazoefficiens USDA 110)

organism: Bradyrhizobium diazoefficiens USDA 110


title: Agilent-086521 Panthera tigris Amoyensis Array [Probe Name version]

status: Public on Dec 11 2020

city: Longyan

first: xin

last: wang

state: Fujian

address: No.1 North Dongxiao Rd.

institute: Longyan University

organism: Panthera tigris amoyensis

manufacture_protocol: See manufacturer's web site at: http://www.agilent.com/


title: Illumina NovaSeq 6000 (Chlorella sp.)

status: Public on Dec 09 2020

organism: Chlorella sp.


title: Illumina NextSeq 500 (Marchantia polymorpha subsp. ruderalis)


title: Illumina HiSeq 2000 (Novosphingobium sp. HR1a)

organism: Novosphingobium sp. HR1a


title: Illumina NovaSeq 6000 (blank sample)

organism: blank sample


title: Illumina NovaSeq 6000 (Mesocricetus auratus; Severe acute respiratory syndrome coronavirus 2)

status: Public on Dec 08 2020

organism:
Mesocricetus auratus
Severe acute respiratory syndrome coronavirus 2


title: Illumina NextSeq 500 (Mycobacteroides abscessus)

organism: Mycobacteroides abscessus


title: MinION (Homo sapiens; Human betaherpesvirus 6)

status: Public on Dec 07 2020

organism:
Homo sapiens
Human betaherpesvirus 6


title: Duke/RG_CbfPho_v2_Apr2019

status: Public on Apr 22 2021

city: Durham

first: Raluca

last: Gordan

state: NC

address: 101 Science Dr, CIEMAS 2179

department: Center for Genomic and Computational Biology

institute: Duke University

organism: synthetic construct

manufacture_protocol: In situ oligosynthesized array with proprietary synthetic sequences that target Cbf1/Pho4 putative binding sites in genomic context.


title: Illumina NovaSeq 6000 (Columba livia)

organism: Columba livia


title: Illumina HiSeq 2500 (Valsa sordida)

organism: Cytospora chrysosperma


title: Illumina NextSeq 500 (Bos indicus)

organism: Bos indicus


title: Illumina HiSeq 2500 (Harpegnathos saltator)

organism: Harpegnathos saltator


title: Illumina NextSeq 500 (Streptomyces ambofaciens ATCC 23877)

organism: Streptomyces ambofaciens ATCC 23877


title: Illumina HiSeq 2500 (Ailuropoda melanoleuca)

organism: Ailuropoda melanoleuca


title: Illumina NextSeq 500 (Enterococcus faecalis)

status: Public on Dec 04 2020

organism: Enterococcus faecalis


title: Sequel (unidentified plasmid)

status: Public on Dec 01 2020

organism: unidentified plasmid


title: Illumina NovaSeq 6000 (Alopecurus myosuroides)

organism: Alopecurus myosuroides


title: Illumina MiniSeq (Escherichia coli)

status: Public on Dec 03 2020

organism: Escherichia coli


title: Ion Torrent Proton (Oryza sativa Japonica Group)

organism: Oryza sativa Japonica Group


title: NextSeq 550 (blank sample)


title: Agilent-065654 bHLH_global_complete2

city: Madrid

first: Jose M.

last: Franco-Zorrilla

state: Madrid

address: Darwin, 3

department: Plant Molecular Genetics

institute: Centro Nacinal de Biotecnologia-CSIC

organism: Arabidopsis thaliana

description:
Probes for all possible bHLH sites in TAIR10. G-boxes triplicate

Arrays of this design have barcodes that begin with 16065654 or 2565654.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina MiSeq (human gut metagenome)

organism: human gut metagenome


title: MinION (Homo sapiens; Human betaherpesvirus 6A)

organism:
Homo sapiens
Human betaherpesvirus 6A


title: Illumina NovaSeq 6000 (Citrus maxima)

organism: Citrus maxima


title: NanoString nCounter Human Myeloid Innate Immunity Panel v2

status: Public on Dec 02 2020

city: Würzburg 97074

first: Chunguang

last: Liang

state: Bayern

address: Bioinformatik, Biozentrum, Uni Würzburg, Am Hubland

department: Bioinformatics

country: Germany

institute: Biozentrum

organism: Homo sapiens

manufacture_protocol: See manufacturer's website (http://www.nanostring.com).


title: Ion Torrent Proton (Herbaspirillum seropedicae)

organism: Herbaspirillum seropedicae


title: Agilent-020912 Streptomyces coelicolor 15K

city: Shanghai

first: Yinhua

last: Lu

address: 100 Guilin Road

department: College of Life Sciences

institute: Shanghai Normal University

organism: Streptomyces coelicolor

manufacture_protocol: Agilent Manufacture Protocol


title: Agilent-032565 Anidulans_whole_v2

city: Warszawa

first: Marek

last: Skoneczny

email: kicia@ibb.waw.pl, mrksknc@gmail.com

address: Pawińskiego 5A

country: Poland

institute: Institute of Biochemistry and Biophysics PAS

organism: Aspergillus nidulans

description: Version 2 contains, in addition to probes against ORFs from AspGD as of Feb 7, 2011, also probes against various regions not identified as ORFs but sometimes giving fluorescence signal, against unmapped features and against two exons of metZ.


title: Sequel II (unidentified plasmid)


title: Agilent-065514 bHLH_promoters_complete

description:
Specific design for bHLHs. contains probes corresponding to 2 kb promoters and 1 kb downstream, as from TAIR10 usptream_ATG and downstream_STOP

Arrays of this design have barcodes that begin with 16065514 or 2565514.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-084783 Mus musculus array (circMouse_0410; Agilent Probe Name)

city: Shijiazhuang

first: Lei

last: Wang

address: Hebei Medical University, No. 361, Zhongshan East Road, Chang'an District

institute: Heibei Medical University

organism: Mus musculus

description:
Arrays of this design have barcodes that begin with 16084783 or 2584783.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Name.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (Picea abies)

last: GEO

organism: Picea abies


title: nCounter Nanostring Human Immunology v2 (Catalog #115000061)

status: Public on May 11 2016

city: Boston

first: Laura

middle: M

last: Cox

state: MA

address: 77 Avenue Louis Pasteur

department: Neurology

institute: Brigham and Women's Hospital

manufacture_protocol:
http://www.nanostring.com/media/pdf/MAN_nCounter_Gene_Expression_Assay.pdf
Oligonucleotide probe hybridization


title: Illumina MiSeq (human feces metagenome)

organism: human feces metagenome


title: DNBSEQ-T7 (Homo sapiens)


title: Agilent-070156 Human_miRNA_V21.0_Microarray 046064 (miRNA ID version)

status: Public on Jun 01 2018

city: Palo Alto

last: Agilent Technologies

institute: Agilent Technologies

description:
Human only version 21.0

Design creation details:
Created by: Agilent Technologies
Created Date:  10/06/2014

Design Format: 8 x 60K
Number of Distinct microRNA Targets Covered: 2549
Number of Agilent Controls: 2164

Arrays of this design have barcodes that begin with 16070156 or 2570156.


title: [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array

status: Public on Nov 07 2003

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 06, 2012: annotation table updated with netaffx build 32
June 23, 2016: annotation table updated with netaffx build 35

relation: Alternative to: GPL4454 (Alternative CDF)

relation: Alternative to: GPL4866 (Alternative CDF)

relation: Alternative to: GPL5760 (Alternative CDF)

relation: Alternative to: GPL6671 (Alternative CDF)

relation: Alternative to: GPL6791 (Alternative CDF)

relation: Alternative to: GPL6879 (Alternative CDF)

relation: Alternative to: GPL7567 (Alternative CDF)

relation: Alternative to: GPL8019 (Alternative CDF)

relation: Alternative to: GPL8542 (Alternative CDF)

relation: Alternative to: GPL8715 (Alternative CDF)

relation: Alternative to: GPL8712 (Alternative CDF)

relation: Alternative to: GPL9102 (Probe Level Version)

relation: Alternative to: GPL9099 (Alternative CDF)

relation: Alternative to: GPL9101 (Alternative CDF)

relation: Alternative to: GPL9324 (Alternative CDF)

relation: Alternative to: GPL9486 (Alternative CDF)

relation: Alternative to: GPL9987 (Alternative CDF)

relation: Alternative to: GPL10175 (Alternative CDF)

relation: Alternative to: GPL10335 (Alternative CDF)

relation: Alternative to: GPL10371 (Alternative CDF)

relation: Alternative to: GPL10526 (Alternative CDF)

relation: Alternative to: GPL10881 (Alternative CDF)

relation: Alternative to: GPL10925 (Alternative CDF)

relation: Alternative to: GPL11084 (Alternative CDF)

relation: Alternative to: GPL11433 (Alternative CDF)

relation: Alternative to: GPL11670 (Alternative CDF)

relation: Alternative to: GPL13232 (Alternative CDF [HGU133Plus2_Hs_REFSEQ, Brainarray version 13.0.0])

relation: Alternative to: GPL13303 (Alternative CDF.)

relation: Alternative to: GPL13916 ([Brainarray ENSG Version 14.1])

relation: Alternative to: GPL14837 (Alternative CDF)

relation: Alternative to: GPL14877 ([Alternative CDF])

relation: Alternative to: GPL15394 (Alternative CDF [HGU133Plus2_Hs_REFSEQ, Brainarray version 14.0])

relation: Alternative to: GPL6732 (Alternative CDF [HGU133Plus2_Hs_REFSEQ, Brainarray version 7])

relation: Alternative to: GPL15445 (Alternative CDF)

relation: Alternative to: GPL16066 (Alternative CDF)

relation: Alternative to: GPL16100 (Alternative CDF [GATExplorer_Ensembl v57])

relation: Alternative to: GPL16268 (Alternative CDF [Brainarray ENSG Version 16])

relation: Alternative to: GPL16273 (Alternative CDF [Brainarray ENSG Version 15])

relation: Alternative to: GPL16311 (Alternative CDF [HGU133Plus2_Hs_ENTREZG Brainarray version 14.0.0])

relation: Alternative to: GPL16356 (Alternative CDF [Brainarray HGU133Plus2_Hs_ENTREZG 15.0.0])

relation: Alternative to: GPL16372 (Alternative CDF [Brainarray HGU133Plus2_Hs_UG v.13])

relation: Alternative to: GPL17392 (Alternative CDF [HGU133Plus2_Hs_ENSG, Brainarray 17.1])

relation: Alternative to: GPL17394 (Alternative CDF [HGU133Plus2_Hs_ENSG, Brainarray 13.0])

relation: Alternative to: GPL17810 (Alternative CDF [HGU133Plus2_Hs_ENTREZG, Brainarray 16])

relation: Alternative to: GPL17811 (Alternative CDF [HGU133Plus2_Hs_ENTREZG, Brainarray 17])

relation: Alternative to: GPL17996 (Alternative CDF:HGU133Plus2_Hs_ENTREZG.cdf version 15.1.0)

relation: Alternative to: GPL18756 (Alternative CDF [CDF: HGU133Plus2_Hs_ENTREZG_14.1.0])

relation: Alternative to: GPL18850 (Alternative CDF)

relation: Alternative to: GPL18478 (Alternative CDF [Hs_ENTREZG_V13])

relation: Alternative to: GPL19109 (Alternative CDF [Brainarray HGU133Plus2_Hs_ENTREZG_v18])

relation: Alternative to: GPL19883 (Alternative CDF [Broad GenePattern])

relation: Alternative to: GPL19918 (Gene symbol version, 10K)

relation: Alternative to: GPL20182 (Gene Symbol Version)

relation: Alternative to: GPL22321 (Alternative CDF [HGU133Plus2_Hs_ENTREZG, Brainarray 20])

relation: Alternative to: GPL23270 ((Alternative CDF [HGU133Plus2_Hs_ENTREZG, Brainarray 21])

relation: Alternative to: GPL23432 (alternative CDF [HGU133Plus2_Hs_ENSG, Brainarray version 18.0.0])

relation: Alternative to: GPL28718 (Alternative CDF [HGU133Plus2_Hs_ENTREZG, Brainarray 23])

relation: Alternative to: GPL29499 (Alternative CDF)

manufacture_protocol:
see manufacturer's web site

Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts
All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. The sequences from which these probe sets were derived were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 133, April 20, 2001) and then refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the University of California, Santa Cruz Golden-Path human genome database (April 2001 release).
In addition, there are 9,921 new probe sets representing approximately 6,500 new genes. These gene sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from the UniGene database (Build 159, January 25, 2003) and refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the NCBI human genome assembly (Build 31).