title: NanoString nCounter Mouse Metabolic Pathways Gene Expression Panel (XT-CSO-MMP1-12)

status: Public on Feb 26 2021

city: Nashville

first: Jeffrey

middle: C

last: Rathmell

state: Tennessee

address: 1161 21st Ave S

department: PMI

country: USA

institute: Vanderbilt University Medical Center

organism: Mus musculus

technology: other

distribution: custom-commercial

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Agilent-085631 Mus musculus lncRNA and mRNA Microarray

status: Public on Jan 31 2021

city: chongqing

first: Liying

last: Zou

address: 136 Zhongshan 2nd

country: China

institute: Children's Hspital of ChongQing Medical University

technology: in situ oligonucleotide

description: 4*180K,Design ID:085631

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Human V3 AROS

city: Jerusalem

first: Inbar

last: Plaschkes

address: The Hebrew University of Jerusalem - Ein Kerem

department: The Faculty of Medicine - Ein Kerem

country: Israel

institute: HUJI

organism: Homo sapiens

technology: spotted oligonucleotide

distribution: non-commercial

manufacture_protocol:
The Spotted long oligonucleotide array produced using the Operon Human Genome Oligo Set Version 2.1 (21,329 70mer oligonucleotides, based on build 147 of the Human UniGene database and the Human RefSeq Database, plus 24 controls) and the Operon Human Genome Oligo Set Version 2.1 Upgrade (5,462 70mer oligonucleotides, based on build 13.31 of the Human Ensembl Database).
Spotting was performed in duplicates (replicate arrays) with 4x6 SMP3 pins (Telechem) at 18-20 °C and 40-50% RH on epoxysilane coated slides (Quantifoil) using 40 µM oligos in FBNC spotting buffer (G. Wrobel et al., Nucleic Acids Res 31 e67, 2003).
Spot centers were 129 µm apart.
DNA adhesion was accomplished by 1 h incubation at 60 °C followed by 240 mJ/cm2 UV irradiation at 254 nm.


title: HiSeq X Ten (Netzelia tuberspinifera)

status: Public on Jan 30 2021

last: GEO

organism: Netzelia tuberspinifera

technology: high-throughput sequencing

distribution: virtual


title: Agilent-028939 UPR9027-IFR88-Paeruginosa_v1

city: Marseille cedex 20

first: Gauthier

last: Dangla-Pélissier

state: PACA

address: 31 chemin Joseph Aiguier

department: IMM

country: France

institute: CNRS

organism: Pseudomonas aeruginosa

description:
UPR9027-IFR88-Paeruginosa_v1

Arrays of this design have barcodes that begin with 16028939 or 2528939.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: BGISEQ-500 (Streptomyces coelicolor)

status: Public on Jan 29 2021

organism: Streptomyces coelicolor


title: SABiosciences Mouse Inflammatory Cytokines & Receptors PCR array [PAMM-011ZD]

city: GALVESTON

first: Xu

last: zheng

state: Texas

address: 301 University Boulevard Basic Science building, 3.142

department: Microbiology and Immunology

institute: University of Texas Medical

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer's website; https://geneglobe.qiagen.com/product-groups/rt2-profiler-pcr-arrays


title: NimbleGen GeoChip v.4.0

city: Biejing

first: Jingmin

last: Cheng

address: NO. 30 Shuangqing Road, Haidian District

department: School of Environment

institute: Tsinghua University

organism: soil metagenome

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [gene name]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

distribution: commercial

manufacture_protocol: See manufacturer's web site.


title: Agilent-079797 Daphnia magna DGC v2 (Feature ID)

city: Barcelona

first: Bruno

last: Campos

address: jordi girona, 18, 18

department: Environmental Chemistry

country: Spain

institute: IDAEA-CSIC

organism: Daphnia magna

description:
versión, similar to v1, but including the replicate prbes

Arrays of this design have barcodes that begin with 16079797 or 2579797.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: HiSeq X Ten (Staphylococcus aureus)

organism: Staphylococcus aureus


title: Illumina HiSeq 2500 (Microbiota)

organism: Microbiota


title: Illumina HiSeq 3000 (Xenopus laevis)

organism: Xenopus laevis


title: Applied Biosystems Rat custom made TaqMan microfluidic card array

city: Mannheim

first: Matthias

last: Kolibabka

state: Baden-Wurttemberg

address: Theodor-Kutzer-Ufer 1-3

department: 5th Medical Department

country: Germany

institute: University Hospital Mannheim

organism: Rattus norvegicus

description:
Parallel PCR assays using microfluidic card technology.
44 assay genes associated with inflammation and microglia activation and 4 reference genes were included.

manufacture_protocol: see manufacturer's website


title: NanoString nCounter Vantage 3D Human Wnt Pathways Panel (N2_WNT_Pth_v1.0)

city: Durham

first: Nicholas

last: DeVito

state: NC

address: 2301 Erwin Road

institute: Duke University

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Illumina HiSeq 2500 ([Candida] auris)

organism: Candidozyma auris


title: Illumina HiSeq 1500 (Drosophila virilis)

organism: Drosophila virilis


title: HiSeq X Ten (Homo sapiens; synthetic construct)

organism:
Homo sapiens
synthetic construct


title: Agilent-029298 Unrestricted Mouse miRNA v14 Rev. 2 Microarray 029296 [miRNA_ID version]

city: Cologne

first: Bent

last: Brachvogel

address: Joseph-Stelzmann Street 52

institute: University of Cologne

description:
miRBase release 14 rev 2

Arrays of this design have barcodes that begin with 16029298 or 2529298.

The ID column represents miRNA_ID.


title: Illumina HiSeq 2500 (Lysinibacillus varians)

status: Public on Jan 28 2021

organism: Lysinibacillus varians


title: Illumina HiSeq 2500 (Clostridioides difficile; Enterococcus faecalis)

organism:
Enterococcus faecalis
Clostridioides difficile


title: PacBio RS II (Blumeria graminis f. sp. hordei; Hordeum vulgare)

organism:
Hordeum vulgare
Blumeria hordei


title: Illumina MiSeq (Corynebacterium diphtheriae)

status: Public on Jan 26 2021

organism: Corynebacterium diphtheriae


title: Illumina NovaSeq 6000 (Streptococcus pneumoniae D39)

status: Public on Jan 27 2021

organism: Streptococcus pneumoniae D39


title: Illumina HiSeq 2500 (Escherichia coli 55989)

organism: Escherichia coli 55989


title: NextSeq 550 (Anopheles stephensi)

status: Public on Jan 25 2021

organism: Anopheles stephensi


title: HiSeq X Ten (Mus)

organism: Mus


title: Illumina NextSeq 500 (Escherichia coli CFT073)

organism: Escherichia coli CFT073


title: Illumina MiSeq (Escherichia coli UTI89)

organism: Escherichia coli UTI89


title: Illumina NovaSeq 6000 (Capsicum annuum)

organism: Capsicum annuum


title: Illumina HiSeq 2500 (Curcuma longa)

status: Public on Jan 22 2021

organism: Curcuma longa


title: [Clariom_D_Mouse] Affymetrix Clariom D Assay, Mouse [CDF: Brainarray ClariomDMouse_Mm_ENTREZG_23.0.0]

status: Public on Jan 23 2021

organism: Mus musculus

description: The custom chip definition file from Brainarray Version 23.0 based on Entrez ID.

manufacture_protocol: See manufacturer's web site (www.affymetrix.com).


title: Sequel II (Escherichia coli)

status: Public on Jan 24 2021

organism: Escherichia coli


title: Ion Torrent S5 (Cryptococcus neoformans)

organism: Cryptococcus neoformans


title: Illumina HiSeq 2000 (Macrocystis pyrifera)

organism: Macrocystis pyrifera


title: Illumina NovaSeq 6000 (Homo sapiens; Human herpesvirus 5 strain Merlin)

status: Public on Jan 21 2021

organism:
Homo sapiens
Human herpesvirus 5 strain Merlin


title: Illumina HiSeq 4000 (Homo sapiens; Human herpesvirus 5 strain Merlin)


title: Illumina HiSeq 4000 (Escherichia coli UTI89)


title: Illumina NextSeq 500 (Mycobacteroides abscessus ATCC 19977)

organism: Mycobacteroides abscessus ATCC 19977


title: Illumina NovaSeq 6000 (Hericium erinaceus)

organism: Hericium erinaceus


title: Illumina HiSeq 4000 (Brassica oleracea var. italica)

organism: Brassica oleracea var. italica


title: Illumina HiSeq 4000 (Trypanosoma congolense)

organism: Trypanosoma congolense


title: Illumina NovaSeq 6000 (Hordeum vulgare)

organism: Hordeum vulgare


title: HiSeq X Ten (Haemaphysalis longicornis)

status: Public on Jan 19 2021

organism: Haemaphysalis longicornis


title: Illumina HiSeq 3000 (Papio anubis)

status: Public on Jan 20 2021

organism: Papio anubis


title: Illumina NextSeq 500 (Torulaspora delbrueckii)

organism: Torulaspora delbrueckii


title: Illumina MiSeq (Escherichia virus Lambda)

organism: Lambdavirus lambda


title: HiSeq X Ten (Gossypium hirsutum)

organism: Gossypium hirsutum


title: Illumina HiSeq 2000 (Synechocystis sp. PCC 6803)

organism: Synechocystis sp. PCC 6803


title: Illumina HISeq 2000 (Mus musculus)


title: Illumina NovaSeq 6000 (Canis lupus familiaris; Chlorocebus sabaeus; Cricetulus griseus; Drosophila melanogaster; Homo sapiens; Mus musculus; Rattus norvegicus)

status: Public on Jan 18 2021

organism:
Drosophila melanogaster
Homo sapiens
Canis lupus familiaris
Cricetulus griseus
Mus musculus
Rattus norvegicus
Chlorocebus sabaeus


title: Illumina MiSeq (Chlorocebus)

status: Public on Jan 17 2021

organism: Chlorocebus


title: Illumina HiSeq 2500 (Leishmania donovani)

organism: Leishmania donovani


title: Illumina HiSeq 4000 (Chlorocebus)


title: GridION (Chlorocebus)


title: Illumina HiSeq 2500 (Escherichia coli UTI89)

organism: Escherichia coli UTI89


title: Illumina NextSeq 500 (Chlorocebus)


title: Illumina NovaSeq 6000 (Homo sapiens; Murine respirovirus)

status: Public on Jan 15 2021

organism:
Homo sapiens
Respirovirus muris


title: Illumina NovaSeq 6000 (Nymphaea micrantha)

organism: Nymphaea micrantha


title: Illumina NovaSeq 6000 (Nymphaea colorata)

organism: Nymphaea colorata


title: Illumina HiSeq 4000 (Homo sapiens; Human betaherpesvirus 5)

status: Public on Jan 14 2021

organism:
Homo sapiens
Human betaherpesvirus 5


title: Illumina HiSeq 4000 (Human betaherpesvirus 5)

organism: Human betaherpesvirus 5


title: Illumina NovaSeq 6000 (Human betaherpesvirus 5)


title: Illumina HiSeq 1500 (Mycolicibacterium smegmatis)

status: Public on Jan 12 2021

organism: Mycolicibacterium smegmatis


title: Illumina NextSeq 500 (Klebsiella oxytoca)

organism: Klebsiella oxytoca


title: Illumina HiSeq 2000 (Bubalus bubalis)

organism: Bubalus bubalis


title: Illumina HiSeq 2000 (Geobacter lovleyi)

status: Public on Jan 13 2021

organism: Trichlorobacter lovleyi


title: Illumina HiSeq 2500 (Pseudomonas fragi)

status: Public on Jan 11 2021

organism: Pseudomonas fragi


title: HiSeq X Five (Stropharia rugosoannulata)

organism: Stropharia rugosoannulata


title: Illumina MiSeq (Hordeum vulgare)

status: Public on Jan 10 2021

organism: Hordeum vulgare


title: Abasht Lab Chicken 204 Custom Codesets

city: Newark

first: Behnam

last: Abasht

state: DE

address: 531 S. College Ave.

institute: University of Delaware

organism: Gallus gallus

manufacture_protocol: Please see “nCounter® Analysis System User Manual”


title: HiSeq X Ten (Mus musculus; Rattus norvegicus)

status: Public on Jan 08 2021

organism:
Mus musculus
Rattus norvegicus


title: Illumina HumanCardio-Metabo BeadChip

city: Mumbai

first: TESTER

middle: F

last: ASHAVAID

state: Maharashtra

address: Lalita Girdhar bldg,3rd floor,Biochemistry Dept.,, V.S.Marg, Mahim

department: Lab Medicine

country: India

institute: P.D. HINDUJA HOSPITAL & MRC

organism: Homo sapiens

technology: oligonucleotide beads


title: Ion Torrent PGM (Gluconacetobacter diazotrophicus)

organism: Gluconacetobacter diazotrophicus


title: Agilent-020736 UCSF custom array miRNA

status: Public on Jan 09 2021

city: San Francisco

first: Srilaxmi

last: Nerella

state: CA

address: HSE1355A, 513 Parnassus ave

department: Department of Medicine

institute: UCSF


title: Qiagen Mouse Extracellular Matrix and Adhesion Molecule PCR Array

city: Southampton

first: Aikta

last: Sharma

state: Hampshire

address: Life Sciences Building 85, University Road

department: Biological Sciences

country: United Kingdom

institute: University of Southampton

organism: Mus musculus

description:
qPCR assay panel
Extracellular Matrix and Adhesion Molecule RT2 Profiler Array


title: Illumina NovaSeq 6000 (Homo sapiens; Saccharomyces cerevisiae)

organism:
Saccharomyces cerevisiae
Homo sapiens


title: Illumina HiSeq 2000 (Bos frontalis)

organism: Bos frontalis


title: Illumina MiSeq (Vitis vinifera)

organism: Vitis vinifera


title: Illumina MiSeq (Photorhabdus laumondii subsp. laumondii TTO1)


title: Illumina NextSeq 500 (Aspergillus luchuensis)

status: Public on Jan 07 2021

organism: Aspergillus luchuensis


title: HiSeq X Ten (Marchantia polymorpha)

organism: Marchantia polymorpha


title: Agilent-078853 pseudomonas_multispecies

city: Verona

first: Elodie

last: Vandelle

state: Verona

address: Strada Le Grazie, 15

department: Department of Biotechnology

country: Italy

institute: University of Verona

organism: Pseudomonas sp.

description:
Multispecies microarray aimed to interrogate coding genes expression of 5 Pseudomonas strains (PstDC3000, PsaCRAFRU8.43, PsaICMP18884, PsaICMP19073 and PsaNCPPB3739) and 3 ICEs (ICE1-3 obtained from genome annotations of the PsaM7, PsaICMP18744 and PsaICMP19455 strain, respectively). Genome annotations referred to Udine and Udine-cured were retrieved from Marcelletti et al., 2011 (Pseudomonas syringae pv. actinidiae draft genomes comparison reveal strain-specific features involved in adaptation and virulence to Actinidia species. PLoS One, 6(11), e2729; doi: 10.1371/journal.pone.0027297).
Arrays of this design have barcodes that begin with 16078853 or 2578853.


title: NextSeq 550 (Mesocricetus auratus)

organism: Mesocricetus auratus


title: Illumina NovaSeq 6000 (Kluyveromyces marxianus)

status: Public on Jan 06 2021

organism: Kluyveromyces marxianus


title: Illumina NovaSeq 6000 (Mammalian orthoreovirus 1 Lang; Mus musculus)

status: Public on Jan 05 2021

organism:
Mus musculus
Mammalian orthoreovirus 1 Lang


title: Illumina HiSeq 2500 (Bordetella pertussis)

organism: Bordetella pertussis


title: miRCURY LNA™ Universal RT microRNA PCR

city: Bryan

first: Amanda

last: Mahnke

state: TX

address: 8447 Riverside Parkway

department: Neuroscience and Experimental Therapeutics

institute: Texas A&M University Health Science Center


title: Illumina HiSeq 4000 (Fusobacterium nucleatum subsp. polymorphum)

organism: Fusobacterium polymorphum


title: Illumina HiSeq 4000 (Fusobacterium nucleatum subsp. polymorphum; Streptococcus gordonii str. Challis substr. CH1)

organism:
Fusobacterium polymorphum
Streptococcus gordonii str. Challis substr. CH1


title: Illumina HiSeq 4000 (Streptococcus gordonii str. Challis substr. CH1)


title: NanoString nCounter Human Myeloid Innate Immunity Panel v2, NS_Hs_Myeloid_V2.0

first: Alice

last: Muglia Thomaz da Silva Amancio

address: Building 33, room 1W10.A3

department: Immunobiology Section

institute: National Institutes of Health (NIH)

manufacture_protocol: See manufacturer's website (http://www.nanostring.com).


title: Illumina NovaSeq 6000 (Mammalian orthoreovirus 3 Dearing; Mus musculus)

organism:
Mus musculus
Mammalian orthoreovirus 3 Dearing


title: Illumina HiSeq 2500 (Apis cerana)

organism: Apis cerana


title: Illumina NovaSeq 6000 (Mammalian orthoreovirus 3 Dearing)

organism: Mammalian orthoreovirus 3 Dearing


title: Illumina NovaSeq 6000 (Mammalian orthoreovirus 1 Lang)

organism: Mammalian orthoreovirus 1 Lang


title: Illumina NovaSeq 6000 (Bifidobacterium longum)

status: Public on Jan 03 2021

organism: Bifidobacterium longum


title: Illumina HiSeq 1500 (Flavobacterium psychrophilum)

status: Public on Jan 04 2021

organism: Flavobacterium psychrophilum


title: BGISEQ-500 (Poecilia formosa)

organism: Poecilia formosa


title: BGISEQ-500 (Poecilia mexicana x Poecilia latipinna)

organism: Poecilia mexicana x Poecilia latipinna


title: Agilent-024282 Candida albicans 1245169391301 [Probe Name]

organism: Candida albicans

description: Arrays of this design have barcodes that begin with 16024282 or 2524282.


title: Illumina MiSeq (Mesocricetus auratus)


title: HiSeq X Ten (Plasmodium berghei)

organism: Plasmodium berghei


title: Illumina HiSeq 2500 (Pyricularia oryzae)

status: Public on Jan 01 2021

organism: Pyricularia oryzae


title: Exiqon miRCURY LNA microRNA array; 7th generation REV - hsa, mmu & rno; batch 208520-22; lot 35106-35106 (miRBase 20.0)

city: Shanghai

first: Yu

last: Liang

address: No. 639 Zhizaoju Road, Shanghai 200011, China

institute: Department of Gastroenterology, Shanghai Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine

organism: Homo sapiens

description:
ProductDate=March 2012
ProductNumber=208520,208521,208522
LotNumberRange=35106-35106

ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 20.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:75.3%

manufacture_protocol: See manufacturer's website: http://www.exiqon.com


title: Agilent-064078 M.tuberculosis_8x15K_V2

city: Borstel

first: Christian

last: Utpatel

address: Parkallee 1

institute: Forschungszentrum Borstel

organism: Mycobacterium tuberculosis

description:
experimentally validated by OakLabs' MyArray strategy

Arrays of this design have barcodes that begin with 16064078 or 2564078.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [HuGene21st_Hs_ENTREZG_23.0.0]

status: Public on Dec 31 2020

city: Ann Arbor

first: Celine

last: Berthier

state: MI

address: 1150 W. Medical Center Dr, MSRB2

institute: University of Michigan

description:
Brainarray: HuGene21st_Hs_ENTREZG_23.0.0
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/23.0.0/entrezg.asp

manufacture_protocol: See manufacturer's web site


title: Nanostring GX custom Mouse epithelial pathways probe panel [Sebelius_Mm_C6189X1]

city: Rockville

first: Jeffrey

last: Robinson

state: United States

address: 9630 Gudelsky Dr

department: Translational Life Sciences Technology

institute: UMBC

organism: Mus musculus

description: RLF_ID = Sebelius_Mm_C6189X1

first: Stephanie

last: Prescott

first: Wendy

last: Henderson

first: Giorgio

last: Trinchieri


title: Illumina NextSeq 500 (Lytechinus variegatus)

last: GEO

organism: Lytechinus variegatus


title: Agilent-024282 Candida albicans 1245169391301

status: Public on Jul 05 2017

city: S. Michele all'Adige (TN)

first: Tobias

last: Weil

address: Via E. Mach, 1

institute: Fondazione Edmund Mach

description:
Arrays of this design have barcodes that begin with 16024282 or 2524282.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (Sus scrofa domesticus)

organism: Sus scrofa domesticus