title: mirVana miRNA Mimics, Human v 21 (384-Well Plate)

status: Public on Jul 07 2021

city: New York City

first: Coen

last: van Solingen

state: New York

address: 435 E30th street, Science Building 723T, Science Building 723T

department: Cardiology/Medicine

country: USA

institute: NYU School of Medicine

organism: Homo sapiens

technology: spotted oligonucleotide

distribution: custom-commercial


title: HiSeq X Ten (Bacillus anthracis)

status: Public on Feb 27 2021

last: GEO

organism: Bacillus anthracis

technology: high-throughput sequencing

distribution: virtual


title: Illumina NextSeq 500 (Neisseria meningitidis MC58)

status: Public on Feb 26 2021

organism: Neisseria meningitidis MC58


title: Illumina MiSeq (Bacillus anthracis)


title: Illumina HiSeq 2500 (Pseudarthrobacter sp. YJ56)

status: Public on Feb 24 2021

organism: Pseudarthrobacter psychrotolerans


title: Illumina HiSeq 2500 (Capsicum annuum; Solanum lycopersicum)

organism:
Capsicum annuum
Solanum lycopersicum


title: Agilent-084221 T. denticola 8x15K array [ProbeName version]

city: Chiyoda-ku

first: Kazuyuki

last: Ishihara

state: Tokyo

address: Misakicho 2-1-14

department: Microbiolgy

country: Japan

institute: Tokyo Dental College

organism: Treponema denticola

technology: in situ oligonucleotide

description: NCBI Reference Sequence VERSION: NC_002967.9

manufacturer: Hokkaido System Science Co., Ltd. (Agilent eArray)

manufacture_protocol: see manufacturer's web site


title: Nanostring nCounter Combined HOT and Fibrosis panels

city: Portland

first: Vanderlene

last: Kung

state: OR

address: 3181 SW Sam Jackson Park Rd

institute: OHSU

technology: other

description: This platform is a combination of XT-CSO-HOT1-12 and XT-CSO-HFIB2-12

distribution: commercial


title: Illumina MiSeq (Lama glama)

status: Public on Feb 23 2021

organism: Lama glama


title: Nanostring nCounter Human Neuropathology Panel

city: Hospitalet de Llobregat (Barcelona)

first: Meritxell

last: Pons

address: Avinguda Gran Via, 199-203

country: Spain

institute: IDIBELL

manufacture_protocol: see manufacturer's website


title: BGISEQ-500 (Aedes aegypti)

organism: Aedes aegypti


title: Illumina HiSeq 2500 (Severe acute respiratory syndrome coronavirus 2)


title: NextSeq 550 (Chlorocebus sabaeus)

organism: Chlorocebus sabaeus


title: Illumina HiSeq 4000 (Nicotiana benthamiana)

organism: Nicotiana benthamiana


title: Illumina MiSeq (Chlorocebus sabaeus)


title: Illumina NovaSeq 6000 (Triticum urartu)

status: Public on Feb 22 2021

organism: Triticum urartu


title: Illumina HiSeq 4000 (Candida albicans; Pseudomonas aeruginosa)

status: Public on Feb 19 2021

organism:
Pseudomonas aeruginosa
Candida albicans


title: HiSeq X Ten (Streptococcus pneumoniae D39)

status: Public on Feb 20 2021

organism: Streptococcus pneumoniae D39


title: HiSeq X Ten (Triticum urartu)


title: Illumina Hiseq 2500 (Arabidopsis thaliana)

organism: Arabidopsis thaliana


title: Illumina NovaSeq 6000 (Komagataella phaffii GS115)

organism: Komagataella phaffii GS115


title: Illumina NovaSeq 6000 (Cyprinodon variegatus)

status: Public on Feb 18 2021

organism: Cyprinodon variegatus


title: [DroGene-1_0-st] Drosophila Gene 1.0 ST Array [drogene10st_Dm_ENTREZG_20.0.0]

status: Public on Feb 21 2021

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism: Drosophila melanogaster

relation: Alternative to: GPL20842 (Alternative CDF [official])

manufacture_protocol: See manufacturer's web site.


title: NextSeq 550 (Fragaria x ananassa)

organism: Fragaria x ananassa


title: Illumina NovaSeq 6000 (Chlorocebus aethiops; Severe acute respiratory syndrome coronavirus 2)

organism:
Chlorocebus aethiops
Severe acute respiratory syndrome coronavirus 2


title: Illumina NovaSeq 6000 (Mus musculus domesticus)

organism: Mus musculus domesticus


title: Illumina NovaSeq 6000 (Nannochloropsis oceanica strain IMET1)

organism: Nannochloropsis oceanica strain IMET1


title: Illumina NextSeq 500 (Junco hyemalis)

organism: Junco hyemalis


title: Illumina HiSeq 2500 (Burkholderia cenocepacia)

status: Public on Feb 17 2021

organism: Burkholderia cenocepacia


title: Illumina NovaSeq 6000 (Citrus sinensis)

organism: Citrus sinensis


title: Ion Torrent Proton (Bactrocera oleae)

organism: Bactrocera oleae


title: Nanostring Cancer Immune Panel [NS_CancerImmune_V1.1]

city: Durham

first: Nicholas

last: DeVito

state: NC

address: 2301 Erwin Road

institute: Duke University

organism: Homo sapiens

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [CDF: hta20_Hs_ENTREZG_24.0.0]

description: This array is identical to GPL17586 but a custom CDF environment was used to extract data [Brainarray Version 24, hta20_Hs_ENTREZG].

manufacture_protocol: See manufacturer's website.


title: HiSeq X Ten (Paracoccus denitrificans)

organism: Paracoccus denitrificans


title: BGISEQ-500 (Bronchus)

organism: Bronchus


title: Illumina MiniSeq (Lactobacillus apis; Lactobacillus helsingborgensis; Lactobacillus kullabergensis; Lactobacillus melliventris)

status: Public on Feb 12 2021

organism:
Lactobacillus apis
Lactobacillus kullabergensis
Lactobacillus helsingborgensis
Lactobacillus melliventris


title: Illumina MiniSeq (Lactobacillus kullabergensis)

organism: Lactobacillus kullabergensis


title: LC Sciences MRA-1018B1_miRSheep_22 (Reporter Name version)

status: Public on Feb 13 2021

city: Melbourne

first: Udari

middle: Eshani

last: Perera

state: Victoria

address: Corner Flemington Road and Parkdrive, Parkville

country: Australia

institute: University of Melbourne

organism: Ovis aries

description:
Platform table annotations based on miRBase release version 17
catalog number: MRA-1033


title: NanoString nCounter Mouse Inflammation panel V2 + Custom Panel PLUS (PLS_Wilson)

city: Riverside

first: Emma

middle: Harriet

last: Wilson

state: CA

address: 900 University Avenue

institute: UC Riverside

organism:
Toxoplasma gondii
Mus musculus

manufacture_protocol: Custom probes added according to NanoString protocol * Added 11 new genes, including 10 Toxoplasma gondii genes, new probes highlighted in blue * Removed 3 probes, dropped probes highlighted in yellow below                                                                                * All probes are species-specific with no risk of off-target hybridizations


title: Illumina NextSeq 500 (Stylophora pistillata)

status: Public on Feb 16 2021

organism: Stylophora pistillata


title: Agilent-027128 Mouse Promoter ChIP-on-Chip Microarray 2x105k_01_Of_1

city: Kobe

first: Yuichi

last: Kumaki

address: 2-2-3 Minatojima-minamimachi, Chuo-ku

department: Center for Developmental Biology

institute: RIKEN

organism: Mus musculus

description:
Mouse ES TS Flk1+ Dnmt KO Developmental Genes Promoter ChIP-on-Chip Microarray 2x105k.
Annotations based on genome build mm9/NCBI37/Jul2007.
Arrays of this design have barcodes that begin with 16027128 or 2527128.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina MiniSeq (Lactobacillus apis)

organism: Lactobacillus apis


title: Illumina MiniSeq (Lactobacillus melliventris)

organism: Lactobacillus melliventris


title: Illumina MiniSeq (Lactobacillus helsingborgensis)

organism: Lactobacillus helsingborgensis


title: Illumina NovaSeq 6000 (Paramoeba perurans; Salmo salar)

status: Public on Feb 15 2021

organism:
Salmo salar
Paramoeba perurans


title: Illumina HiSeq 2500 (Paramoeba perurans)

organism: Paramoeba perurans


title: [Clariom_D_Human] Affymetrix Human Clariom D Assay [CDF: ClariomDHuman_Hs_ENSG.cdf]

status: Public on Feb 11 2021

city: Sydney

first: Chi Nam Ignatius

last: Pang

state: NSW

address: School of Biotechnology and Biomolecular Sciences, UNSW Australia

department: The NSW Systems Biology Initiative

institute: The University of New South Wales

manufacture_protocol: See manufacturers website


title: Illumina NovaSeq 6000 (Escherichia coli O157:H7)

status: Public on Feb 09 2021

organism: Escherichia coli O157:H7


title: Illumina NovaSeq 6000 (Dokdonia sp. Dokd-P16)

organism: Dokdonia sp. Dokd-P16


title: Illumina HiSeq 2000 (Staphylococcus lugdunensis)

organism: Staphylococcus lugdunensis


title: Illumina HiSeq 4000 (Lactobacillus apis; Lactobacillus helsingborgensis; Lactobacillus kullabergensis; Lactobacillus melliventris)


title: BGISEQ-500 (Equus caballus)

organism: Equus caballus


title: Illumina HiSeq 4000 (Peromyscus leucopus)

status: Public on Feb 08 2021

organism: Peromyscus leucopus


title: Illumina MiSeq (Crocus sativus)

organism: Crocus sativus


title: Exiqon miRCURY LNA microRNA array, 7th generation [miRBase v21; batch 208500-2,208510,208520-22; lot 35041]

city: shanghai

first: boke

last: zhang

address: 600 Yishan Road

country: China

institute: Shanghai Jiao Tong University Affiliated Sixth People's hospital

organism:
Homo sapiens
Human alphaherpesvirus 2
Herpesvirus saimiri (strain 11)
JC polyomavirus
Human immunodeficiency virus 1
Human betaherpesvirus 6B
Merkel cell polyomavirus
Betapolyomavirus hominis
Betapolyomavirus macacae

description:
Product=miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno
ProductDate=March 2012
ProductNumber=208500,208501,208502,208510,208520,208521,208522
LotNumberRange=35041-35041
Organism(s)=Homo sapiens, Human Epstein-barr virus, Human Human herpesvirus 5, Human Human immunodeficiency virus 1, Human Human herpesvirus 1, Human Human herpesvirus 8, Simian Simian virus 40, Human JC polyomavirus, Human BK polyomavirus, Human Merkel cell polyomavirus, Human Herpes simplex virus 2, Human Herpes B virus, Human Herpesvirus saimiri strain A11, Human Human herpesvirus 6B
GalFileCreationDate=2016-12-09 09:32
ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 21.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:75.14%


title: HiSeq X Ten (Pyricularia oryzae)

organism: Pyricularia oryzae


title: 454 GS FLX (Elaeis guineensis)

status: Public on Feb 07 2021

organism: Elaeis guineensis


title: Illumina NovaSeq 6000 (Gossypium hirsutum)

organism: Gossypium hirsutum


title: Illumina HiSeq 2000 (Mycobacterium tuberculosis variant bovis)

status: Public on Feb 04 2021


title: Illumina HiSeq 2000 (Parageobacillus thermoglucosidasius)

organism: Parageobacillus thermoglucosidasius


title: UPenn PathoChip v5_086327_D_F_20200313

status: Public on Feb 06 2021

city: Philadelphia

first: Erle

middle: S

last: Robertson

state: Pennsylvania

address: 3610 Hamilton Walk Johnson Pavilion

department: Department of Otorhinolaryngology

institute: University of Pennsylvania

organism:
human metagenome
Severe acute respiratory syndrome coronavirus 2

description: PathoChIP contains sequences that are unique, conserved and frequently mutated across various regions of the SARS-CoV-2 genome. This PathoChip (V5) contains 60,000 probes and represents all known viruses, including SARS-CoV-2, and pathogenic microbes that comprise 250 helminths, 130 protozoa, 360 fungi, and 320 bacteria, totaling more than 6,000 accessions.


title: Sino Human 4x180K CeRNA Array v3 (Agilent-085477)

first: xiaoxiao

last: sun

institute: sinomics

organism: Homo sapiens

description: Design ID 085477

manufacture_protocol: Agilent


title: Illumina HiSeq 4000 (Perkinsus marinus)

status: Public on Feb 03 2021

organism: Perkinsus marinus


title: Illumina HiSeq 2000 (Myotis riparius)

organism: Myotis riparius


title: Illumina MiSeq (HIV-1 vector pNL4-3; Homo sapiens)

organism:
Homo sapiens
HIV-1 vector pNL4-3


title: Illumina NovaSeq 6000 (Tachysurus vachellii)

organism: Tachysurus vachellii


title: BioMark Dynamic IFC Arrays (Rattus norvegicus)

city: Albuquerque

first: Rajanikanth

last: Vadigepalli

state: PA

address: 1 University of New Mexico

institute: University of New Mexico

organism: Rattus norvegicus

technology: RT-PCR

description: PCR assay

manufacture_protocol: see manufacturer website


title: GeoChip 5.0

city: Nanjing

first: Huabing

last: Li

address: East Beijing Road 73

institute: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences

organism:
Bacteria
Archaea
Eukaryota
Viruses

manufacture_protocol: see manufacturer's web site(http://www.glomics.com/gch-tech.html)


title: Nanostring pancancer [moPanCanImm]

status: Public on Feb 10 2021

city: bethesda

first: james

middle: w

last: hodge

state: md

address: 10/8b13, 9000 rockville pike

department: LTIB

institute: NCI

organism: Mus musculus


title: Agilent-015153 Human CytoCGH Microarray (Feature Number version)

status: Public on Feb 02 2021

city: Gothenburg

first: Yvonne

last: Arvidsson

address: Box 425

department: Biomedicin

country: Sweden

institute: University of Gothenburg

description: Grid_GenomicBuild = hg17:NCBI35:May2004

manufacture_protocol: See manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 2500 (Emergencia timonensis)

last: GEO

organism: Emergencia timonensis


title: Illumina HiSeq 2500 (Eucalyptus globulus)

status: Public on Feb 01 2021

organism: Eucalyptus globulus


title: Agilent-031697 Yeast 8x60k Tiling Array [Probe name version]

organism: Saccharomyces cerevisiae S288C

relation: Alternative to: GPL13972 (feature number version)


title: Illumina HiSeq 2500 (Trichoderma atroviride IMI 206040)

organism: Trichoderma atroviride IMI 206040


title: Mouse exonic evidence based oligonucleotide (MEEBO) microarray [MI_MEEBO_Lot#20868]

status: Public on Jan 29 2021

city: Guangzhou

first: xu

last: yang

address: jinsui road 9

institute: Guangzhou Women and Children's Medical Center

distribution: non-commercial


title: MinION (Measles morbillivirus)

status: Public on Feb 05 2021

organism: Measles morbillivirus


title: Agilent-056873 Cryptomeria japonica array re_Cj_ex_ne_by_BCM_1probe_ver1.0 (Probe name version)

status: Public on Jan 30 2021

city: Hitachi

first: Mine

last: Nose

state: Ibaraki

address: 3809-1 Ishi, Juo

institute: Forest Tree Breeding Center

organism: Cryptomeria japonica

description:
Agilent-056873 re_Cj_ex_ne_by_BCM_1probe_ver1.0
Arrays of this design have barcodes that begin with 16056873 or 2556873.


title: Illumina NovaSeq 6000 (Drosophila melanogaster; Mus musculus)

organism:
Drosophila melanogaster
Mus musculus


title: UMCU-42

city: Dublin

first: Cristina

last: Reschke

address: 123 St Stephens Green, Dublin 2

country: Ireland

institute: Royal College of Surgeons in Ireland

manufacture_protocol: UMC Utrecht, The Netherlands


title: Illumina NovaSeq 6000 (Ciona intestinalis)

organism: Ciona intestinalis


title: Illumina NovaSeq 6000 (Berghia stephanieae)

organism: Berghia stephanieae


title: Agilent-031697 Yeast 8x60k Tiling Array

status: Public on Aug 09 2011

city: Kansas City

first: Madelaine

last: Gogol

state: MO

address: 1000 E. 50th Street

department: Computational Biology Core

institute: Stowers Institute

middle: M

relation: Alternative to: GPL29687 (probe name version)


title: Agilent-023795 Human DNA Methylation Microarray 244k (Probe Name Version)

status: Public on Mar 24 2015

first: GEO

last: admin

institute: NCBI/NLM/NIH

organism: Homo sapiens

description:
Human DNA Methylation Microarray 244k

Arrays of this design have barcodes that begin with 16023795 or 2523795.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (Chlorocebus aethiops)

organism: Chlorocebus aethiops


title: [DroGene-1_0-st] Drosophila Gene 1.0 ST Array [transcript (gene) version]

status: Public on Aug 24 2015

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Drosophila melanogaster

description:
Annotations derived from Affymetrix transcript csv file:
DroGene-1_0-st-v1.na34.dm3.transcript.csv

#%create_date=Tue May  6 17:15:38 2014 PDT
#%chip_type=DroGene-1_0-st-v1
#%lib_set_name=DroGene-1_0-st
#%lib_set_version=v1
#%genome-species=Drosophila melanogaster
#%genome-version=dm3
#%genome-version-ucsc=dm3
#%genome-version-create_date=2006-03-06
#%genome-lifted-method=NONE
#%genome-lifted_from-species=Drosophila melanogaster
#%genome-lifted_from-version-ucsc=dm3
#%netaffx-annotation-date=2013-08-30
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster

relation: Alternative to: GPL29751 (Alternative CDF [drogene10st_Dm_ENTREZG_20.0.0])

manufacture_protocol: See manufacturer's web site


title: NanoString nCounter Human CodeSet OTTA2014

status: Public on Aug 20 2020

city: Kensington

first: Susan

last: Ramus

address: High Street

department: School of Women's and Children's Health

institute: UNSW Sydney