title: Illumina HiSeq 2500 (Stylophora pistillata)

status: Public on Mar 31 2021

last: GEO

country: USA

organism: Stylophora pistillata

technology: high-throughput sequencing

distribution: virtual


title: DNBSEQ-G400 (Malus domestica)

status: Public on Mar 30 2021

organism: Malus domestica


title: Arraystar tRNA PCR Array - mouzes

status: Public on Sep 05 2022

city: Berlin

first: Matthew

middle: Lee

last: Kraushar

state: Berlin

address: Ihnestrasse 63-73

department: Department of Computational Molecular Biology

country: Germany

institute: Max Planck Institute for Molecular Genetics

organism: Mus musculus

technology: RT-PCR

description: Mouse tRNA RT-PCR quantification panel

manufacture_protocol: see manufacturer's website https://www.arraystar.com/nrstar-trna-pcr-array/


title: Illumina NextSeq 500 (Homo sapiens; Panine betaherpesvirus 2)

organism:
Homo sapiens
Panine betaherpesvirus 2


title: Illumina NovaSeq 6000 (Coccidioides immitis RS)

organism: Coccidioides immitis RS


title: [Axiom_InCor_BB] Affymetrix Axiom Array

city: Sao Paulo

first: Roberta

last: Martins

address: Av. Dr. Eneas Carvalho de Aguiar, 470

country: Brazil

institute: FMUSP

organism: Homo sapiens

technology: in situ oligonucleotide

description:
Data table: Axiom_InCor_BB.na34.annot.csv

##For information about the Annotation file content
#%create_date=2014-05-06 GMT-08:00 11:51:40
#%chip_type=Axiom_InCor_BB
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=37
#%genome-version-create_date=2009-02-00
#%mitochondrion-version=NC_012920
#%dbSNP-date=2013-04-25
#%dbSNP-version=138
#%hapmap-date=2008-01-08
#%hapmap-version=23
#%omim-date=2013-07-09
#%allele_frequency_data_reference=1KGp1_mar2012 and Affymetrix_internal_screen
#%netaffx-annotation-date=2013-07-01
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-tabular-format-version=1.5

distribution: commercial

manufacture_protocol: see manufacturer's web site


title: Illumina NextSeq 500 (Fusobacterium periodonticum 2_1_31)

status: Public on Mar 29 2021

organism: Fusobacterium periodonticum 2_1_31


title: Illumina HiSeq 3000 (Chaetomium sp. MPI-CAGE-AT-0009)

organism: Chaetomium sp. MPI-CAGE-AT-0009


title: Illumina NextSeq 500 (Fusobacterium nucleatum subsp. vincentii 3_1_36A2)

organism: Fusobacterium vincentii 3_1_36A2


title: NanoString nCounter Mouse Neuroinflammation Panel [NS_Mm_NeuroInflam_v1.0]

status: Public on May 15 2022

city: Vancouver

first: Honglin

last: Luo

state: British Columbia

address: Room 166, 1081 Burrard Street

country: Canada

institute: University of British Columbia

technology: other

distribution: custom-commercial


title: Nanostring human miRNA panel (NS_H_MIR_V3A)

status: Public on Apr 27 2021

city: Los Angeles

first: Helen

middle: Bermudez

last: Foley

email: hfoley@usc.edu, helenbfoley@gmail.com

state: CA

address: 1441 Eastlake

department: Preventive Medicine

institute: University of Southern California

manufacture_protocol: see manufacturer's website


title: Illumina NextSeq 500 (Fusobacterium nucleatum subsp. animalis 7_1)

organism: Fusobacterium animalis 7_1


title: NextSeq 550 (Saccharomyces cerevisiae; Saccharomyces kudriavzevii)

organism:
Saccharomyces cerevisiae
Saccharomyces kudriavzevii


title: Illumina NovaSeq 6000 (Alternaria alternata)

status: Public on Mar 27 2021

organism: Alternaria alternata


title: Illumina HiSeq 2500 (Saccharomyces cerevisiae; Saccharomyces kudriavzevii)


title: Illumina MiSeq (Serratia marcescens subsp. marcescens ATCC 13880)

status: Public on Mar 25 2021


title: Illumina HiSeq 3000 (Halenospora varia)

organism: Halenospora varia


title: MAR-1002_miRMouse_19

status: Public on Mar 26 2021

city: Dalian

first: Bo

last: Liu

address: 9 Western Section, Lvshun South Street

country: China

institute: Dalian Medical University

description: Based on Sanger miRBase Release 19


title: Illumina HiSeq 3000 (Arabidopsis thaliana; Halenospora varia)

organism:
Arabidopsis thaliana
Halenospora varia


title: Illumina HiSeq 3000 (Truncatella angustata)

organism: Truncatella angustata


title: NextSeq 550 ([Candida] glabrata; Saccharomyces cerevisiae)

organism:
Saccharomyces cerevisiae
Nakaseomyces glabratus


title: Illumina HiSeq 3000 (Paraphoma chrysanthemicola)

organism: Paraphoma chrysanthemicola


title: Illumina NovaSeq 6000 (Schmidtea mediterranea)

organism: Schmidtea mediterranea


title: Nanostring Mouse Gene Expression

city: Worcester

first: Katherine

middle: A

last: Fitzgerald

state: Massachusetts

address: 364 plantation st, LRB 340D

department: Medicine

institute: UMASS MEDICAL SCHOOL


title: nCounter Custom Melanoma Panel

city: Camperdown

first: Dario

last: Strbenac

state: NSW

address: City Road

department: School of Mathematics and Statistics

country: Australia

institute: University of Sydney

manufacture_protocol: Commercial process


title: Illumina HiSeq 3000 (Arabidopsis thaliana; Macrophomina phaseolina)

organism:
Arabidopsis thaliana
Macrophomina phaseolina


title: Illumina HiSeq 3000 (Arabidopsis thaliana; Phaeosphaeria sp.)

organism:
Arabidopsis thaliana
Phaeosphaeria sp.


title: Illumina HiSeq 3000 (Phaeosphaeria sp. MPI-PUGE-AT-0046c)

organism: Phaeosphaeria sp. MPI-PUGE-AT-0046c


title: Illumina HiSeq 3000 (Arabidopsis thaliana; Chaetomium sp.)

organism:
Arabidopsis thaliana
Chaetomium sp.


title: Illumina HiSeq 3000 (Arabidopsis thaliana; Paraphoma chrysanthemicola)

organism:
Arabidopsis thaliana
Paraphoma chrysanthemicola


title: Illumina HiSeq 2500 (Saccharolobus solfataricus P2)

organism: Saccharolobus solfataricus P2


title: miRCURY LNA microRNA Array, v.10.0 - hsa, mmu & rno (miRBase v10.1)

status: Public on Mar 23 2021

city: Houston

first: Yue

last: Lu

state: TX

address: 1881 East Road

department: Epigenetics & Molecular Carcinogenesis

institute: The University of Texas MD Anderson Cancer Center

organism:
Mus musculus
Murid betaherpesvirus 1
Murid gammaherpesvirus 4

technology: spotted oligonucleotide

manufacture_protocol: standard Exiqon protocol for production of commercial array


title: Illumina HiSeq 2000 (Trichinella patagoniensis)

organism: Trichinella patagoniensis


title: Agilent-083405 Genotypic_EA993_Goat_8x60k_array

status: Public on Mar 24 2021

city: Warszawa

first: Joanna

last: Pławińska-Czarnak

address: Nowoursynowska 159

country: Poland

institute: WULS-SGGW

organism: Capra hircus

description:
Goat gene expression array from transcripts
Arrays of this design have barcodes that begin with 16083405 or 2583405.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

first: Alicja

last: Majewska

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: NextSeq 550 (Drosophila melanogaster; Homo sapiens; Human alphaherpesvirus 1)

organism:
Drosophila melanogaster
Homo sapiens
Human alphaherpesvirus 1


title: Illumina HiSeq 2000 (Trichinella papuae)

organism: Trichinella papuae


title: Illumina HiSeq 2000 (Trichinella nelsoni)

organism: Trichinella nelsoni


title: Illumina HiSeq 3000 (Arabidopsis thaliana; Truncatella angustata)

organism:
Arabidopsis thaliana
Truncatella angustata


title: Illumina HiSeq 3000 (Macrophomina phaseolina)

organism: Macrophomina phaseolina


title: Illumina HiSeq 2000 (Trichinella sp. T6)

organism: Trichinella sp. T6


title: Illumina HiSeq 2000 (Trichinella murrelli)

organism: Trichinella murrelli


title: Illumina HiSeq 2000 (Trichinella britovi)

organism: Trichinella britovi


title: Illumina HiSeq 2000 (Trichinella sp. T9)

organism: Trichinella sp. T9


title: Illumina NovaSeq 6000 (Ogataea parapolymorpha)

organism: Ogataea parapolymorpha


title: Illumina MiSeq (Saccharolobus solfataricus P2)


title: Illumina HiSeq 3000 (Saccharolobus solfataricus P2)


title: Illumina HiSeq 2500 (human gut metagenome)

status: Public on Mar 22 2021

organism: human gut metagenome


title: Illumina HiSeq 2500 (insect gut metagenome)

status: Public on Mar 19 2021

organism: insect gut metagenome


title: Illumina NextSeq 500 (Mycolicibacterium smegmatis MC2 155)

organism: Mycolicibacterium smegmatis MC2 155


title: SOMAscan human proteomic assay

status: Public on Mar 18 2021

city: Boston

first: Hui

last: Pan

address: 1 Joslin Place

department: Bioinformatics and Biostatistics Core

institute: Joslin Diabetes Center

organism: Homo sapiens

technology: spotted peptide or protein


title: Illumina HiSeq 2500 (Ixodes scapularis)

organism: Ixodes scapularis


title: Illumina HiSeq 2000 (Trichinella nativa)

organism: Trichinella nativa


title: Illumina HiSeq 2000 (Trichinella zimbabwensis)

organism: Trichinella zimbabwensis


title: Illumina NextSeq 500 (Crotalus viridis)

organism: Crotalus viridis


title: Illumina NextSeq 500 (Arachis hypogaea)

status: Public on Mar 17 2021

organism: Arachis hypogaea


title: HiSeq X Ten (Muntiacus reevesi)

organism: Muntiacus reevesi


title: Illumina NovaSeq 6000 (Muntiacus muntjak)

organism: Muntiacus muntjak


title: NextSeq 550 (Muntiacus reevesi)


title: Illumina HiSeq 2000 (Trichinella sp. T8)

organism: Trichinella sp. T8


title: HiSeq X Ten (Aplysia californica)

organism: Aplysia californica


title: Illumina NextSeq 500 (Pleurobrachia bachei)

organism: Pleurobrachia bachei


title: Illumina HiSeq 2000 (Trichinella pseudospiralis)

organism: Trichinella pseudospiralis


title: Illumina NextSeq 500 (Acropora millepora)

organism: Acropora millepora


title: Illumina NovaSeq 6000 (Lethenteron camtschaticum)

organism: Lethenteron camtschaticum


title: Illumina NovaSeq 6000 (Brassica napus)

organism: Brassica napus


title: Illumina NovaSeq 6000 (Chiloscyllium punctatum)

organism: Chiloscyllium punctatum


title: Illumina NextSeq 500 (Clonorchis sinensis)

organism: Clonorchis sinensis


title: Illumina NextSeq 500 (Branchiostoma lanceolatum)

organism: Branchiostoma lanceolatum


title: Illumina NovaSeq 6000 (Strongylocentrotus purpuratus)

organism: Strongylocentrotus purpuratus


title: Illumina NovaSeq 6000 (Pygocentrus nattereri)

organism: Pygocentrus nattereri


title: BGISEQ-500 (Nicotiana benthamiana)

organism: Nicotiana benthamiana


title: HiSeq X Ten (Python bivittatus)

organism: Python bivittatus


title: Illumina Genome Analyzer II (uncultured marine bacterium)

status: Public on Mar 16 2021

organism: uncultured marine bacterium


title: HiSeq X Ten (Notamacropus eugenii)

organism: Notamacropus eugenii


title: Qiagen RT2 Profiler PCR Array Human EGF/PDGF Signaling Pathway [PAHS-040Z]

city: Baltimore

first: Swathi

last: Karthikeyan

state: MD

address: 733 N Broadway

institute: Johns Hopkins University School of Medicine

organism: Homo sapiens

description: PCR assay


title: Illumina NovaSeq 6000 (Plasmodium berghei)

status: Public on Mar 15 2021

organism: Plasmodium berghei


title: Illumina NextSeq 500 (Magnetospirillum gryphiswaldense)

organism: Magnetospirillum gryphiswaldense


title: Illumina NextSeq 500 (Mus musculus; synthetic construct)

organism:
Mus musculus
synthetic construct


title: Illumina MiSeq (Homo sapiens; synthetic construct)

organism:
Homo sapiens
synthetic construct


title: Illumina HiSeq 2500 (Medicago ruthenica)

organism: Medicago ruthenica


title: Illumina NextSeq 500 (Hypsibius exemplaris)

organism: Hypsibius exemplaris


title: Illumina HiSeq 2000 (Zymomonas mobilis)

organism: Zymomonas mobilis


title: Illumina NovaSeq 6000 (Methanosarcina barkeri)

organism: Methanosarcina barkeri


title: Illumina HiSeq 4000 (Nematostella vectensis)

organism: Nematostella vectensis


title: Illumina NovaSeq 6000 (Plasmodium falciparum 3D7)

organism: Plasmodium falciparum 3D7


title: HiSeq X Ten (Nitzschia laevis)

organism: Nitzschia laevis


title: Illumina HiSeq 4000 (Medicago ruthenica)


title: Illumina NovaSeq 6000 (Chlorocebus aethiops aethiops; Severe acute respiratory syndrome coronavirus 2)

status: Public on Mar 13 2021

organism:
Chlorocebus aethiops aethiops
Severe acute respiratory syndrome coronavirus 2


title: Illumina NovaSeq 6000 (Lactuca sativa)

status: Public on Mar 14 2021

organism: Lactuca sativa


title: QuantStudio 12K Flex Real-Time PCR System, OpenArray block and  Mice Custom TaqMan OpenArray Real-Time PCR Plates

city: La Laguna

first: Emma

last: Carmelo

state: SANTA CRUZ DE TENERIFE

address: C/ Astrofisico Francisco Sanchez s/n, Campus de Anchieta

department: University Institute of Tropical Diseases and Public Health

country: Spain

institute: University of La Laguna

organism: Mus musculus


title: Illumina HiSeq 2500 (Schizocosa ocreata)

status: Public on Mar 11 2021

organism: Schizocosa ocreata


title: Qiagen miProfile Cancer miRNA qPCR Panel

status: Public on Mar 12 2021

city: Shenyang

first: Wei

last: Yang

address: 36 Sanhao street

institute: Shengjing hospital of China Medical University

description: Qiagen miProfile Cancer miRNA qPCR Array


title: Illumina HiSeq 3000 (Rangifer tarandus)

organism: Rangifer tarandus


title: Agilent-084217 Homo sapiens circRNA array

city: Nanjing

first: Zijuan

last: Wu

state: Jiangsu

address: 300 Guangzhou Road, Nanjing, 210029, China

institute: The First Affiliated Hospital of Nanjing  Medical University, Jiangsu Province Hospital

organism: Homo sapiens


title: Illumina NextSeq 500 (Thalassiosira pseudonana)

organism: Thalassiosira pseudonana


title: Illumina NextSeq 500 (Bacillus cereus)

status: Public on Mar 10 2021

organism: Bacillus cereus


title: DNBSEQ-G400 (Neurospora crassa)

status: Public on Mar 09 2021

organism: Neurospora crassa


title: HiSeq X Ten (Mustela putorius furo)

organism: Mustela putorius furo


title: MinION (Giardia intestinalis)

organism: Giardia duodenalis


title: Illumina HiSeq 3000 (Leptospira borgpetersenii serovar Hardjo)

status: Public on Mar 08 2021


title: Illumina NextSeq 500 (Streptomyces albidoflavus)

organism: Streptomyces albidoflavus


title: Illumina HiSeq 4000 (Coregonus lavaretus)

organism: Coregonus lavaretus


title: DNBSEQ-G400 (Sus scrofa)

organism: Sus scrofa


title: Illumina HiSeq 2500 (Rattus norvegicus; Toxoplasma gondii)

organism:
Toxoplasma gondii
Rattus norvegicus


title: [HG-U133A] Affymetrix Human Genome U133A Array [gene name]

city: Bethesda

first: GEO

last: admin

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: See manufacturer's web site.


title: DNBSEQ-G400 (Monopterus albus)

last: GEO

organism: Monopterus albus


title: Illumina MiSeq (Giardia intestinalis)


title: Illumina HiSeq 2500 (Komagataeibacter europaeus)

organism: Komagataeibacter europaeus


title: Qiagen Homo Sapiens miScript II RT Kit

city: Belo Horizonte

first: Izabela

middle: Mamede Costa Andrade

last: Conceição

state: Minas Gerais

address: Av. Pres. Antônio Carlos, 6627

department: Genetics

institute: UFMG

description: PCR array for human microRNAs


title: Illumina NextSeq 500 (Nicotiana tabacum; Phytophthora nicotianae)

organism:
Nicotiana tabacum
Phytophthora nicotianae


title: Illumina NextSeq 500 (Faecalibacterium prausnitzii)

status: Public on Mar 05 2021

organism: Faecalibacterium prausnitzii


title: Illumina MiSeq (Xerophyta schlechteri)

status: Public on Mar 04 2021

organism: Xerophyta schlechteri


title: Illumina NovaSeq 6000 (Mus spretus)

organism: Mus spretus


title: Illumina NovaSeq 6000 (Hominidae)

organism: Hominidae


title: Illumina HiSeq 4000 (Mycobacterium tuberculosis H37Rv)

organism: Mycobacterium tuberculosis H37Rv


title: Agilent-075649 B. animalis 14602

status: Public on Mar 03 2021

city: Cork

first: Francesca

last: Bottacini

address: Western Road

department: APC Microbiome Institute & School of Microbiology

country: Ireland

institute: University College Cork

organism: Bifidobacterium animalis

description:
Arrays of this design have barcodes that begin with 16075649 or 2575649.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina Miniseq (Homo sapiens)

organism: Homo sapiens


title: Human Custom RT-PCR

city: Salisbury

first: Karen

middle: Elizabeth

last: Kempsell

state: Wiltshire

address: Porton Down

department: Science Group

country: United Kingdom

institute: UK Health Security Agency

description: PCR assay


title: Illumina HiSeq 2500 (Meloidogyne incognita)

organism: Meloidogyne incognita


title: Illumina HiSeq 4000 (Hosta ventricosa)

status: Public on Mar 06 2021

organism: Hosta ventricosa


title: Illumina HiSeq 2500 (Lithobates catesbeianus)

status: Public on Mar 02 2021

organism: Aquarana catesbeiana


title: Illumina NovaSeq 6000 (Acomys cahirinus)

organism: Acomys cahirinus


title: Illumina HiSeq 2000 (Halobacteriaceae archaeon YIM 93972)

organism: Halocatena halophila


title: Illumina NovaSeq 6000 (Drosophila melanogaster; Homo sapiens)

organism:
Drosophila melanogaster
Homo sapiens


title: Illumina MiSeq (Fusobacterium nucleatum subsp. nucleatum)


title: Illumina NextSeq 500 (Gallus gallus; Homo sapiens)

organism:
Gallus gallus
Homo sapiens


title: Illumina NovaSeq 6000 (Homo sapiens; Toxoplasma gondii)

organism:
Toxoplasma gondii
Homo sapiens


title: [PrimeView] Affymetrix Human Gene Expression Array [CDF: primeviewhsentrezgaltrabio183465.cdf]

city: Lyon

first: Simon

last: de Bernard

address: 30 rue Pré Gaudry

country: France

institute: AltraBio

description: This Platform is identical to GPL15207 but a custom CDF environment was used to extract data.

relation: Alternative to: GPL15207 (Alternative CDF [official])


title: SBI Mouse Complete SeraMir Exosome RNA Amplification and Profiling Kit

status: Public on Mar 01 2021

city: Hong Kong SAR

first: Jin

last: Liu

address: 7 Baptist University Road, Kowloon Tong

department: TMBJ

institute: Hong Kong Baptist University

organism: Mus musculus

description:
Exosomal microRNA PCR assay
Exosomal microRNA Amplification and Profiling Kit


title: Nanostring nCounter Elements™ TagSet preselected for mitochondrial biogenesis and function panel

city: Jakarta Barat

first: Velma

last: Herwanto

state: DKI Jakarta

address: Perum. Sunrise Garden, Jalan Surya Mutiara III blok V no. 30

country: Indonesia

institute: Faculty of Medicine, Universitas Tarumanagara

description: Digital detection of fluorescent molecular barcode


title: Illumina HiSeq 2000 (Lilium davidii var. unicolor)

organism: Lilium davidii var. unicolor


title: Illumina HiSeq 3000 (Anser anser domesticus)

organism: Anser anser


title: Illumina HiSeq 4000 (Vaccinium ashei)

organism: Vaccinium ashei


title: SBI mmu-miRNome MicroRNA Profiling Kit (Mouse)

description:
mmu-miRNome MicroRNA PCR assay
mmu-miRNome MicroRNA Profiling Kit


title: Illumina HiSeq 1500 (Burkholderia pseudomallei K96243)

organism: Burkholderia pseudomallei K96243


title: Illumina MiSeq (Prevotella intermedia)

organism: Prevotella intermedia


title: Illumina HiSeq 2500 (Prunus sibirica)

organism: Prunus sibirica


title: Illumina NovaSeq 6000 (Streptococcus equi subsp. equi)

organism: Streptococcus equi subsp. equi


title: Illumina HiSeq 2500 (Paeonia lactiflora)

organism: Paeonia lactiflora


title: Illumina NovaSeq 6000 (Streptomyces coelicolor)

organism: Streptomyces coelicolor


title: Illumina NextSeq 500 (Streptomyces lividans)

organism: Streptomyces lividans


title: Agilent-071626 60k_trout_phylo_genome [Probe-Name version]

status: Public on Sep 30 2018

city: Rennes

first: Aurelie

last: LE CAM

address: Campus de Beaulieu

department: PHASE

institute: INRA

organism: Oncorhynchus mykiss

description: A different version of this platform with the Agilent Feature Number in the ID column is assigned accession number GPL29965.


title: NextSeq 550 (Muntiacus muntjak)

status: Public on Mar 17 2021

organism: Muntiacus muntjak


title: Agilent-024427 mouse CGH 4x180k 024426

city: Ulm

first: André

last: Lechel

address: Albert-Einstein-Allee 23

department: Department of Internal Medicine I

institute: University hospital Ulm

description:
Arrays of this design have barcodes that begin with 16024427 or 2524427.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Agilent-079364 GeoChip 5.0M (180K)

status: Public on Feb 19 2021

city: Tachikawa-shi,

first: Shu-Kuan

last: Wong

state: Tokyo

address: 10-3, Midori-cho,

country: Japan

institute: National Polar Research Institute

organism: uncultured soil microorganism

description: Bacteria; Archaea; Eukaryota; Viruses


title: [PrimeView] Affymetrix Human Gene Expression Array

status: Public on Feb 11 2012

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Homo sapiens

description: July 10, 2019: annotation table updated with netaffx build 36

relation: Alternative to: GPL19660 (Alternative CDF [Brainarray version 18])

relation: Alternative to: GPL23342 (Alternative CDF)

relation: Alternative to: GPL21975 (Alternative CDF [Brainarray ENTREZG Version 17])

relation: Alternative to: GPL25487 (Alternative CDF [Brainarray ENTREZG Version 22])

relation: Alternative to: GPL29838 (Alternative CDF [primeviewhsentrezgaltrabio183465])

relation: Alternative to: GPL29913 (Alternative CDF [primeviewhsentrezgaltrabio183641.cdf])

manufacture_protocol: See details from Affymetrix. This is a commercially available chip.


title: [HG-U133A] Affymetrix Human Genome U133A Array

status: Public on Mar 11 2002

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 08, 2012: annotation table updated with netaffx build 32
June 24, 2016: annotation table updated with netaffx build 35

relation: Alternative to: GPL4557 (Alternative CDF)

relation: Alternative to: GPL7566 (Alternative CDF)

relation: Alternative to: GPL9021 (Alternative CDF)

relation: Alternative to: GPL9741 (Alternative CDF)

relation: Alternative to: GPL10553 (Alternative CDF: ncilpg_U133Agb)

relation: Alternative to: GPL14663 (Alternative CDF)

relation: Alternative to: GPL16212 (Alternative CDF)

relation: Alternative to: GPL17027 (Alternative CDF)

relation: Alternative to: GPL17662 (alternative CDF)

relation: Alternative to: GPL19184 (CDF: v18 ENTREZG)

manufacture_protocol:
see manufacturer's web site

The U133 set includes 2 arrays with a total of 44928 entries and was indexed 29-Jan-2002.
The set includes over 1,000,000 unique oligonucleotide features covering more than 39,000 transcript variants, which in turn represent greater than 33,000 of the best characterized human genes.
Sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from Build 133 of UniGene (April 20, 2001) and refined by analysis and comparison with a number of other publicly available databases including the Washington University EST trace repository and the University of California, Santa Cruz golden-path human genome database (April 2001 release). In addition, ESTs were analyzed for untrimmed low-quality sequence information, correct orientation, false priming, false clustering, alternative splicing and alternative polyadenylation.