title: Illumina NextSeq 500 (Camelus dromedarius)

status: Public on Apr 30 2021

last: GEO

country: USA

organism: Camelus dromedarius

technology: high-throughput sequencing

distribution: virtual


title: Illumina HiSeq 4000 (Cucurbita moschata)

status: Public on Apr 27 2021

organism: Cucurbita moschata


title: Illumina NovaSeq 6000 ([Candida] glabrata)

status: Public on Apr 29 2021

organism: Nakaseomyces glabratus


title: Agilent-071626 60k_trout_phylo_genome [Feature Number version]

status: Public on Jul 07 2021

city: Saint-Pée-sur-Nivelle

first: Thérèse

last: Callet

country: France

institute: INRA

organism: Oncorhynchus mykiss

technology: in situ oligonucleotide

description: A different version of this platform with the Agilent Probe Name in the ID column is assigned accession number GPL24910.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 3000 (Vibrio cholerae)

status: Public on Apr 28 2021

organism: Vibrio cholerae


title: Illumina HiSeq 2000 (Astyanax mexicanus)

organism: Astyanax mexicanus


title: HiSeq X Ten (Bombyx mori)

organism: Bombyx mori


title: Illumina NovaSeq 6000 (Pseudoalteromonas sp. JSTW)

status: Public on Apr 26 2021

organism: Pseudoalteromonas sp. JSTW


title: Agilent-085740 Zebrafish Oligo Microarray (Probe name version)

city: Gifu city

first: Shigeo

last: Takashima

state: Gifu

address: 1-1 Yanagido

department: Life Science Research Center

country: Japan

institute: Gifu University

organism: Danio rerio


title: Agilent-060809 agilent-pear-28101-v1

status: Public on Apr 24 2021

city: Tsukuba

first: Chikako

last: Nishitani

state: Ibaraki

institute: National Institutes of Fruit Tree Science

organism: Pyrus pyrifolia

technology: spotted oligonucleotide


title: NanoString nCounter Human v3 miRNA Assay (NS_H_miR_v3b)

city: Gainesville

first: Rob

last: Maile

state: FL

department: Surgery

institute: University of Florida

organism: Homo sapiens

technology: other

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Illumina NovaSeq 6000 (Stenocereus queretaroensis)

status: Public on Apr 23 2021

organism: Stenocereus queretaroensis


title: Illumina HiSeq 4000 (Homo sapiens; Mus musculus; Rattus norvegicus)

organism:
Homo sapiens
Mus musculus
Rattus norvegicus


title: Illumina HiSeq 2500 (Liolaemus parthenos)

status: Public on Apr 25 2021

organism: Liolaemus parthenos


title: Illumina MiSeq (Shigella flexneri)

organism: Shigella flexneri


title: Agilent-030859 Nofima Atlantic salmon microarray, version 5

status: Public on Apr 22 2021

city: Aas

first: Aleksei

last: Krasnov

address: Osloveien 1

department: Fish Health

country: Norway

institute: Nofima AS

organism: Salmo salar

description:
GE 4x44k oligo microarray includes probes to 21k protein coding sequences of Atlantic salmon in duplicate. Oligonucleotides, 60-mer plus linker, are synthesized directly on glass slide using the Agilent’s SurePrint Technology; oligo design was carried out by eArray.
SIQ5

manufacture_protocol: See SurePrint Technology at manufacturer's web site (http://agilent.com/).


title: Illumina MiSeq (Human adenovirus 2)

organism: Human adenovirus 2


title: Illumina HiSeq 2000 (Sparus aurata)

organism: Sparus aurata


title: Illumina NextSeq 500 (Ixodes pacificus)

organism: Ixodes pacificus


title: illumina NovaSeq 6000 (Mus musculus)

organism: Mus musculus


title: [Clariom_S_Human] Affymetrix Clariom S Human array [ClariomSHuman_Hs_ENSG_24.0.0]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

manufacture_protocol: See manufacturer's web site.


title: Illumina Genome Analyzer IIx (Nicotiana benthamiana; Rice stripe tenuivirus)

status: Public on Apr 21 2021

organism:
Nicotiana benthamiana
Tenuivirus oryzaclavatae


title: Illumina Genome Analyzer IIx (Nicotiana benthamiana)

organism: Nicotiana benthamiana


title: Illumina NovaSeq 6000 (Mus musculus; Rattus norvegicus)

status: Public on Apr 20 2021

organism:
Mus musculus
Rattus norvegicus


title: QIAGEN miScript Rat Inflammatory Response and Autoimmunity miRNA PCR Array [MIRN-105Z]

status: Public on Apr 19 2021

first: Ley

middle: Cody

last: Smith

address: 2187 Mowry Rd

organism: Rattus norvegicus

technology: RT-PCR

description: PCR assay; MIRN-105Z

manufacture_protocol: see manufacturer's website


title: Coronavirus Antigen Microarray

city: Irvine

first: Li

last: Liang

state: CA

address: MedSurge II

institute: University of California Irvine

organism:
Human coronavirus 229E
Human respirovirus 3
Human parainfluenza virus 4b
Influenza A virus
Influenza B virus
Human respirovirus 1
Human coronavirus OC43
human metapneumovirus
Human respiratory syncytial virus A
Human respiratory syncytial virus B
Human coronavirus NL63
Human coronavirus HKU1
Severe acute respiratory syndrome-related coronavirus
Human adenovirus sp.
Dromedary camel coronavirus
Human orthorubulavirus 2
Severe acute respiratory syndrome coronavirus 2

technology: spotted peptide or protein

description:
60 antigens across respiratory virus subtypes, including 11 antigens from SARS-CoV-2 expressed in either baculovirus or HEK-293 cells. All antigens were supplied by Sino Biological Inc.
Purified proteins were printed onto ONCYTE AVID nitrocellulose-coated slides (Grace Bio-Labs, Bend, OR) using an OmniGrid 100 microarray printer (GeneMachines).

distribution: non-commercial

manufacture_protocol: See manufacturer website.


title: Illumina NovaSeq 6000 (Bombus terrestris)

organism: Bombus terrestris


title: illumina NextSeq 500 (Zea mays)

status: Public on Apr 18 2021

organism: Zea mays


title: Illumina NovaSeq 6000 (Ardisia pusilla)

status: Public on Apr 17 2021

organism: Ardisia pusilla


title: Illumina NovaSeq 6000 (Lactiplantibacillus plantarum)

organism: Lactiplantibacillus plantarum


title: Sequel II (Harpegnathos saltator)

organism: Harpegnathos saltator


title: Illumina HiSeq 2500 (Novosphingobium sp. HR1a)

organism: Novosphingobium sp. HR1a


title: PICME Pine 7K Series

status: Public on Apr 15 2021

city: Oulu

first: Janne

middle: J

last: Koskimäki

address: Pentti Kaiteran katu 1

department: Ecology and Genetics Research Unit

country: Finland

institute: University of Oulu

organism: Pinus pinaster

technology: spotted DNA/cDNA

description: Material generated by INRA - UMR BIOGECO. PICME Pine 7K 2_2   Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane.   Number of spots: 15298 (7649 printed as duplicate):   Number of pins/blocks: 48

manufacturer: Austrian Research Centers GmbH - ARC, PICME

manufacture_protocol: Spottingbuffer: 3xSSC+ 1,5MBetain  Spottingplate setting: Biozym 10µl  Arrayer Hardware: GeneMachines Omnigrid II  Arrayer Software: OmniGrid Gridder 2.2.13  Humidity: 50%  Dipping time in sec: 1


title: Illumina NovaSeq 6000 (Ipomoea batatas)

organism: Ipomoea batatas


title: Illumina HiSeq 3000 (Homo sapiens; Human T-cell leukemia virus type I)

status: Public on Apr 16 2021

organism:
Homo sapiens
Human T-cell leukemia virus type I


title: HiSeq X Ten (Oncorhynchus mykiss)

organism: Oncorhynchus mykiss


title: Illumina NovaSeq 6000 (Rhizophagus irregularis)

organism: Rhizophagus irregularis


title: Illumina HiSeq 2500 (Klebsiella aerogenes)

status: Public on Apr 14 2021

organism: Klebsiella aerogenes


title: [CyRGene-1_0-st] Cynomolgus + Rhesus Gene 1.0 ST Array (ver. cm1_rhemac2)

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Macaca

description:
#%create_date=Thu May 29 16:54:58 2014 PDT
#%chip_type=CyRGene-1_0-st-v1
#%lib_set_name=CyRGene-1_0-st
#%lib_set_version=v1
#%genome-version=cm1_rhemac2
#%genome-version-ucsc=cm1_rhemac2
#%genome-lifted_from-version-ucsc=cm1_rhemac2
#%netaffx-annotation-date=04-15-2014
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
#probeset_id refers to the transcript cluster id not the exon level probe set and is required for ExACT software compatibility.

manufacture_protocol: see manufacturer's web site


title: Illumina MiSeq (Komagataella phaffii)

organism: Komagataella phaffii


title: Agilent-042593 Candida tropicalis array [Feature Number version]

status: Public on Apr 13 2021

city: Irapuato

first: Eugenio

last: Mancera

state: Guanajuato

address: Km. 9.6 Libramiento Norte Carretera Irapuato-Leon

department: Ingenieria Genetica

country: Mexico

institute: Cinvestav

organism: Candida tropicalis

description:
Microarray for expression profiling of Candida tropicalis

Arrays of this design have barcodes that begin with 16042593 or 2542593.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Nanostring GeoMx 2020 Broad COVID Platform

status: Public on Apr 11 2021

city: Cambridge

first: Samouil

last: Farhi

state: Massachusetts

address: 415 Main St.

institute: Broad Institute of MIT and Harvard

organism: Homo sapiens

manufacture_protocol: See manufacturer's website  https://www.nanostring.com/support/product-support/support-system?jumpto=geomx-technical-documents


title: HiSeq X Ten (Chlorella sorokiniana)

organism: Chlorella sorokiniana


title: Illumina NextSeq 500 (Capsicum annuum)

status: Public on Apr 12 2021

organism: Capsicum annuum


title: MinION (Rhizophagus irregularis)


title: Illumina HiSeq 1500 (Rhizophagus irregularis)


title: NextSeq 550 (Xenopus tropicalis)

status: Public on Apr 08 2021

organism: Xenopus tropicalis


title: Agilent-030860 Nofima Atlantic salmon microarray, version 6

organism: Salmo salar


title: Illumina HiSeq 2500 (Thinopyrum elongatum)

status: Public on Apr 06 2021

organism: Thinopyrum elongatum


title: PacBio RS (Thinopyrum elongatum)


title: DNBSEQ-G400 (Nicotiana benthamiana)

organism: Nicotiana benthamiana


title: Illumina NovaSeq 6000 (Streptomyces venezuelae ATCC 10712)

status: Public on Apr 09 2021

organism: Streptomyces venezuelae ATCC 10712


title: Applied Biosystems Rodent MicroRNA Cards (A+B Cards) miRBase v14

city: Fukushima

first: Hayato

last: Go

state: Fukushima

address: Hikarigaoka 1

department: Pediatrics

institute: Fukushima Medical University

organism: Mus musculus

description:
PCR assay
Two array card set (Array Card Rodent A v3.0 and Array Card Rodent B


title: Applied Biosystems Human/Rodent MicroRNA Cards (A+B Cards) miRBase v14

description:
PCR assay
Two array card set (Array Card Human A v3.0 and Array Card Rodent B)


title: Illumina NovaSeq 6000 (Brassica rapa subsp. pekinensis)

organism: Brassica rapa subsp. pekinensis


title: ArrayStar Human Circular RNA mircoarray V2.0  (8x15K; Agilent-069978)

status: Public on Apr 04 2021

city: Guangzhou

first: Xin

last: Chen

address: 651 Dongfeng dong Road

country: China

institute: Sun Yat-sen University Cancer Center

manufacture_protocol: see manufacturere's website


title: Illumina NovaSeq 6000 (Panax vietnamensis)

organism: Panax vietnamensis


title: Illumina NovaSeq 6000 (Xenopus tropicalis)


title: Illumina NovaSeq 6000 (Malus domestica)

organism: Malus domestica


title: Illumina HiSeq 2500 (Anolis sagrei)

status: Public on Apr 02 2021

organism: Anolis sagrei


title: Illumina NovaSeq 6000 (Equus asinus)

organism: Equus asinus


title: Illumina HiSeq 4000 (Macrobrachium rosenbergii)

status: Public on Apr 10 2021

organism: Macrobrachium rosenbergii


title: [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array [CDF: Mouse4302_Mm_ENTREZG Brainarray version 24.0.0]

status: Public on Apr 01 2021

relation: Alternative to: GPL1261 (Alternative CDF [official])

manufacture_protocol: This is identical to GPL1261 but a custom cdf environment was used to extract data. The cdf can be found at the link below.


title: Illumina HiSeq 4000 (Helianthus annuus)

organism: Helianthus annuus


title: Illumina HiSeq 2000 (Fusobacterium nucleatum subsp. nucleatum ATCC 25586)


title: [Marmo2a520631F] Affymetrix Custom Marmoset GeneChip

city: Kodaira

first: Satoshi

last: Watanabe

state: Tokyo

address: 4-1-1 Ogawa Higashi

institute: National Center of Neurology and Psychiatry

organism: Callithrix jacchus

manufacture_protocol: See manufacturer's website


title: Illumina NextSeq 500 (Prochlorococcus sp. MIT 0604)

status: Public on Apr 03 2021

organism: Prochlorococcus sp. MIT 0604


title: Agilent-042592 Candida dubliniensis array [Feature Number version]

organism: Candida dubliniensis

description:
Microarray for expression profiling of Candida dubliniensis, strain CD36

Arrays of this design have barcodes that begin with 16042592 or 2542592.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (Caenorhabditis briggsae)

organism: Caenorhabditis briggsae


title: Illumina NovaSeq 6000 (Homo sapiens; Human betaherpesvirus 5)

status: Public on Apr 05 2021

organism:
Homo sapiens
Human betaherpesvirus 5


title: [CynGene-1_0-st] Cynomolgus + Rhesus Gene 1.0 ST Array (ver. cm1)

status: Public on Jun 30 2016

city: Chapel Hill

first: Rebecca

middle: Catherine

last: Fry

address: 1213 MHRC

department: Environmental Sciences and Engineering

institute: UNC-Chapel Hill

organism:
Macaca fascicularis
Macaca mulatta

description:
%create_date=Wed May 28 16:42:41 2014 PDT
%chip_type=CynGene-1_1
%lib_set_name=CynGene-1_0-st
%lib_set_version=v1
%genome-version=cm1
%genome-version-ucsc=cm1
%genome-lifted_from-version-ucsc=cm1
%netaffx-annotation-date=04-15-2014
%netaffx-annotation-netaffx-build=34
%netaffx-annotation-tabular-data-version=1.1
%netaffx-annotation-tabular-format-version=1.1
%netaffx-annotation-data-type=transcript_cluster
%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
%netaffx-annotation-docgen-version=8487
%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
probeset_id refers to the transcript cluster id  and is required for ExACT software compatibility.  not the exon level probe set


title: HiSeq X Ten (Polypedilum vanderplanki)

last: GEO

organism: Polypedilum vanderplanki


title: Canine custom Nanostring Probeset - 160 genes

status: Public on Dec 17 2020

city: North Grafton

first: Jillian

middle: M

last: Richmond

address: 200 Westboro Road

department: Comparative Pathobiology

institute: Tufts Cummings School of Veterinary Medicine

organism: Canis lupus familiaris


title: Illumina HiSeq 2500 (Leptospira biflexa)

organism: Leptospira biflexa


title: Arraystar Human LncRNA microarray V2.0 (Agilent-033010 Probe Name version)

status: Public on Mar 06 2012

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

organism: Homo sapiens

description:
ArrayStar Human LncRNA Microarray V2.0 is designed for the global profiling of human LncRNAs and protein-coding transcripts. 33,045 LncRNAs and 30,215 coding transcripts can be detected by our second-generation LncRNA microarray. The LncRNAs are carefully collected from the most authoritative databases such as RefSeq, UCSC knowngenes, Ensembl and many related literatures. Each transcript is represented by a specific exon or splice junction probe which can identify individual transcript accurately. Positive probes for housekeeping genes and negative probes are also printed onto the array for hybridization quality control.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL13825

relation: Alternative to: GPL13825 (Feature Number version)


title: Illumina NovaSeq 6000 (Oncorhynchus mykiss)

organism: Oncorhynchus mykiss


title: [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array

status: Public on May 25 2004

organism: Mus musculus

description:
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 07, 2012: annotation table updated with netaffx build 32
June 23, 2016: annotation table updated with netaffx build 35

distribution: commercial

relation: Alternative to: GPL5008 (Alternative CDF)

relation: Alternative to: GPL5766 (Alternative CDF)

relation: Alternative to: GPL5759 (Alternative CDF)

relation: Alternative to: GPL6456 (Alternative CDF)

relation: Alternative to: GPL6526 (Alternative CDF)

relation: Alternative to: GPL7368 (Alternative CDF)

relation: Alternative to: GPL7546 (Alternative CDF)

relation: Alternative to: GPL7635 (Alternative CDF)

relation: Alternative to: GPL6886 (Alternative CDF)

relation: Alternative to: GPL8059 (Alternative CDF)

relation: Alternative to: GPL8462 (Alternative CDF)

relation: Alternative to: GPL8492 (Alternative CDF)

relation: Alternative to: GPL9523 (Alternative CDF)

relation: Alternative to: GPL9746 (Alternative CDF)

relation: Alternative to: GPL10288 (Alternative CDF [Mm_ENTREZG_11])

relation: Alternative to: GPL10369 (Alternative CDF [Mm_Unigene_10])

relation: Alternative to: GPL10773 (Alternative CDF)

relation: Alternative to: GPL11044 (Alternative CDF [Mouse4302_Mm_REFSEQ])

relation: Alternative to: GPL14657 (Alternative CDF [Mouse4302_Mm_ENSG_13])

relation: Alternative to: GPL14661 (Alternative CDF [Mouse4302_Mm_EntrezG])

relation: Alternative to: GPL14757 (Alternative CDF [Mouse4302_Mm_REFSEQ_v11])

relation: Alternative to: GPL15041 (alternative CDF)

relation: Alternative to: GPL15592 (Alternative CDF)

relation: Alternative to: GPL15967 (Alternative CDF)

relation: Alternative to: GPL16225 (Alternative CDF [Mouse4302_Mm_ENTREZG_v14])

relation: Alternative to: GPL16368 (Alternative CDF [Mouse4302_Mm_ENTREZG_v16])

relation: Alternative to: GPL16582 (Alternative CDF [mouse4302daiplusv6cdf])

relation: Alternative to: GPL18223 (Alternative CDF [Mouse4302_Mm_ENTREZG_v17.1.0])

relation: Alternative to: GPL18376 (Alternative CDF [Mouse4302_Mm_ENTREZG_12.1.0])

relation: Alternative to: GPL18416 (Alternative CDF [Mouse430A2_Mm_ENST_13.0.0])

relation: Alternative to: GPL18615 (Alternative CDF (Mouse4302_Mm_ENTREZG_v17.0.0))

relation: Alternative to: GPL18854 (Alternative CDF (Mouse4302_Mm_REFSEQ_v16.0.0))

relation: Alternative to: GPL19559 (Alternative CDF [Mouse4302_Mm_ENTREZG_18.0.0])

relation: Alternative to: GPL20766 (Alternative CDF [Mouse4302_Mm_ENSG_17.0.0])

relation: Alternative to: GPL22519 (Alternative CDF [Mouse4302_Mm_ENSG_19.0.0])

relation: Alternative to: GPL23097 (Alternative CDF [Mouse4302_Mm_ENTREZG_21.0.0])

relation: Alternative to: GPL26724 (Alternative CDF)

relation: Alternative to: GPL29970 (Alternative CDF [Mouse4302_Mm_ENTREZG_24.0.0])

manufacture_protocol:
see manufacturer's web site

All probe sets represented on the GeneChip Mouse Expression Set 430 are included on the GeneChip Mouse Genome 430 2.0 Array. The sequences from which these probe sets were derived were selected from GenBank«, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 107, June 2002) and then refined by analysis and comparison with the publicly available draft assembly of the mouse genome from the Whitehead Institute for Genome Research (MGSC, April 2002).