title: Agilent-069048 Bifidobacterium bifidum 0140801_Bbi [Probe Name version]

status: Public on Nov 01 2021

city: Kunitachi

first: Eiji

last: Ishikawa

state: Tokyo

address: Izumi 5-11

country: Japan

institute: Yakult Central Institute

organism: Bifidobacterium bifidum

technology: in situ oligonucleotide

description:
Arrays of this design have barcodes that begin with 16069048 or 2569048.

Orientation:

The ID column represents the Agilent Probe Name.

A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL30164.

distribution: custom-commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: BGISEQ-500 (Taenia solium)

status: Public on May 27 2021

last: GEO

country: USA

organism: Taenia solium

technology: high-throughput sequencing

distribution: virtual


title: Illumina MiSeq (Taenia solium)


title: HiSeq X Ten (Pseudomonas syringae)

status: Public on May 31 2021

organism: Pseudomonas syringae


title: NanoString GeoMx Cancer Transcriptome Atlas

status: Public on Nov 21 2021

city: Hefei

first: Cheng

last: Sun

state: Anhui

address: 17, Lujiang Road

department: the First Affiliated Hospital of USTC

country: China

institute: University of Science and Technology of China

organism: Homo sapiens

technology: other

description:
GeoMx Cancer Transcriptome Atlas. Human RNA for Illumina Systems
RNA panel including 1834 targets plus controls for human immune response, tumor biology, and microenvironment. Includes RNA probes for Illumina NGS readout.

manufacture_protocol: See manufacturer's website.


title: Illumina NovaSeq 6000 (Ziziphus jujuba var. spinosa)

status: Public on May 26 2021

organism: Ziziphus jujuba var. spinosa


title: Illumina HiSeq 2500 (Mycobacterium tuberculosis variant bovis BCG)


title: Illumina Hiseq 2000 (Mus musculus)

organism: Mus musculus


title: Illumina HiSeq 3000 (Populus trichocarpa)

status: Public on May 25 2021

organism: Populus trichocarpa


title: Illumina NovaSeq 6000 (Harpegnathos saltator)

organism: Harpegnathos saltator


title: BGISEQ-500 (Mastacembelus armatus)

status: Public on May 24 2021

organism: Mastacembelus armatus


title: nCounter Breast Cancer 360 Panel

status: Public on May 28 2021

city: Barcelona

first: Fara

last: Brasó-Maristany

state: Barcelona

address: C/Casanova 143

department: Medical Oncology

country: Spain

institute: Institut d'Investigacions Biomediques August Pi I Sunyer

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: Agilent-043155 Human array

city: Seoul

first: Sang Kil

last: Lee

address: 50-1 Yonsei-ro, Seodeamun-gu

department: Internal Medicine

country: South Korea

institute: Yonsei University Colloge of Medicine

manufacture_protocol: Agilent website


title: Illumina HiSeq 2500 (Brachiaria humidicola)

organism: Urochloa humidicola


title: NanoString nCounter Mouse Myeloid Innate Immunity Panel v2

status: Public on Jul 08 2021

city: Riverside

first: Meera

middle: G

last: Nair

state: CA

address: 3401 Watkins Drive

department: Division of Biomedical Sciences

institute: University of California Riverside


title: Illumina HiSeq 3000 (Laccaria bicolor; Populus trichocarpa)

organism:
Populus trichocarpa
Laccaria bicolor


title: Illumina NovaSeq 6000 (insect gut metagenome; Spodoptera frugiperda)

organism:
Spodoptera frugiperda
insect gut metagenome


title: NextSeq 550 (Anopheles gambiae)

organism: Anopheles gambiae


title: Illumina NovaSeq 6000 (Pseudomonas lundensis)

organism: Pseudomonas lundensis


title: HiSeq X Ten (Eucalyptus grandis)

status: Public on May 21 2021

organism: Eucalyptus grandis


title: Illumina NovaSeq 6000 (Pinus pinaster)

organism: Pinus pinaster


title: Illumina NovaSeq 6000 (Komagataeibacter xylinus)

organism: Komagataeibacter xylinus


title: Illumina NextSeq 500 (Bifidobacterium pseudocatenulatum)

status: Public on May 30 2021

organism: Bifidobacterium pseudocatenulatum


title: [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: hugene10st_Hs_ENTREZG, Brainarray version 23]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

description: This is identical to GPL6244  but a custom CDF environment was used to extract data [Brainarray Version 23]. CDF and other files can be downloaded at web link below.

manufacture_protocol: See manufacturer's web site


title: Illumina NextSeq 500 (Trachemys scripta)

organism: Trachemys scripta


title: NextSeq 2000 (Homo sapiens; Severe acute respiratory syndrome coronavirus 2)

organism:
Homo sapiens
Severe acute respiratory syndrome coronavirus 2


title: Illumina NextSeq 500 (Pseudomonas lundensis)


title: MinION (Pinus pinaster)


title: MGISEQ-2000RS (Homo sapiens)

status: Public on May 29 2021

organism: Homo sapiens


title: HiSeq X Ten (Dugesia japonica)

organism: Dugesia japonica


title: Sequel (Quercus lobata)

organism: Quercus lobata


title: Illumina NovaSeq 6000 (Francisella tularensis subsp. tularensis SCHU S4)

status: Public on May 20 2021


title: Autoantigen Microarray Panel I

city: POITIERS

first: Mickaël

last: MARTIN

address: 2 rue de la Milétrie

country: France

institute: Poitiers University Hospital

organism: Mus musculus

technology: spotted peptide or protein

description:
Array version: 98Ag_20171220 panel I
Slide serial no.: UTPA20171220S34-35

manufacturer: University of Texas Southwestern Medical Center; UTSW Genomics and Microarray Core Facility

manufacture_protocol: Serum samples were pretreated with DNAse-I and then diluted 1:50 in PBST buffer for autoantibody profiling. The autoantigen array bearing 94 autoantigens and 4 control proteins (diluted in PBS-0.1% Tween20 to 0.1 - 0.2 mg/mL) were printed in duplicates into Nitrocellulose film slides (FAST Slide, 16 pad, Whatman Inc). The diluted serum samples were incubated with the autoantigen arrays, and autoantibodies were detected with cy3-labeled anti-mouse IgG using a Genepix 4200A scanner (Molecular Device) with laser wavelength of 532 nm. The resulting images were analyzed using Genepix Pro 6.0 software (Molecular Devices).  The median of the signal intensity for each spot were calculated and subtracted the local background around the spot, and data obtained from duplicate spots were averaged. The background subtracted signal intensity of each antigen was normalized to the average intensity of the total mouse IgG, which was included on the array as an internal control. Finally, the net fluorescence intensity (NFI) for each antigen was calculated by subtracting a PBS control which was included for each experiment as negative control. Signal-to-noise ratio (SNR) was used as a quantitative measurement of the true signal above background noise. SNR values equal to or greater than 3 were considered significantly higher than background, and therefore true signals.


title: MinION (Vitis vinifera)

organism: Vitis vinifera


title: NextSeq 2000 (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina Genome Analyzer IIx (Klebsiella sp. AqSCr)

organism: Klebsiella sp. AqSCr


title: Illumina NovaSeq 6000 (Francisella tularensis subsp. novicida U112)


title: HiSeq X Ten (Alcaligenes sp. HO-1)

status: Public on May 19 2021

organism: Alcaligenes ammonioxydans


title: Illumina NextSeq 500 (Novosphingobium aromaticivorans DSM 12444)


title: Illumina NextSeq 500 (Danio albolineatus)

organism: Danio albolineatus


title: Illumina HiSeq 2500 (Dirofilaria immitis)

organism: Dirofilaria immitis


title: LC Sciences MRA-1001B2 Human miRNA Array [miRHuman_22]

city: Chicago

first: Afsar

last: Naqvi

state: IL

address: 801 S Paulina, Room 561B

department: Periodontics

institute: University of Illinois at Chicago

description: The content of each chip are probes against human miRNA and control sequences. Multiple redundant regions are included. Each region consists of miRNA probes, which detect miRNA transcripts listed in Sanger miRBase Release 22 (http://www.mirbase.org/). In addition, multiple control probes are included on each chip. The control probes are used for quality controls of chip production, sample labeling and assay conditions. Among the control probes, PUC2PM-20B and PUC2MM-20B are the perfect match and single-based match detection probes, respectively, of a 20-mer RNA positive control sequence that is spiked into the RNA samples before labeling.

manufacture_protocol: See manufacturer's website (www.lcsciences.com).


title: Qiagen RT2 Profiler PCR Array Human Signal Transduction Pathway [PAHS-014Z]

status: Public on May 17 2021

technology: RT-PCR

distribution: commercial


title: Illumina NextSeq 500 (Lacticaseibacillus rhamnosus)

organism: Lacticaseibacillus rhamnosus


title: Illumina NovaSeq 6000 (Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2)


title: Illumina MiniSeq (Pseudomonas aeruginosa)

organism: Pseudomonas aeruginosa


title: Illumina HiSeq 4000 (Bombus terricola)

organism: Bombus terricola


title: HiSeq X Ten (Pythium myriotylum)

organism: Pythium myriotylum


title: Fluidigm BioMark

city: Farmington

first: Mohammed

last: Toufiq

state: Connecticut

address: 10 Discovery Drive, Farmington, CT 06032

department: Research Department

institute: The Jackson Laboratory for Genomic Medicine

description:
Fluidigm D3 Assay Design tool
https://d3.fluidigm.com
264 genes representing important blood transcriptomic fingerprints in health and disease states.


title: Illumina MiSeq (Porphyromonas gingivalis ATCC 33277)

status: Public on May 14 2021

organism: Porphyromonas gingivalis ATCC 33277


title: Agilent-037661 Arabidopsis thaliana Microarray Gene Expression 8X60K (AMADID: 376611)

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

country: India

institute: Genotypic Technology

organism: Arabidopsis thaliana


title: Nanostring nCounter Mouse PanCancer Immune Profiling Panel

status: Public on May 18 2021

city: Cambridge

first: Anushka

last: Dongre

address: 455 Main St

institute: Whitehead Institute

manufacture_protocol: See manufacturer's website http://www.nanostring.com


title: Illumina HiSeq 2500 (Mycobacteroides abscessus ATCC 19977)

status: Public on May 12 2021

organism: Mycobacteroides abscessus ATCC 19977


title: RayBio Quantibody Mouse Th1/Th2/Th17 Array Q1

city: Piscataway

first: Fumio

last: Matsumura

address: 604 Allison Rd

department: MBB

institute: Rutgers

technology: antibody

manufacture_protocol: See manufacturer's website


title: Illumina NextSeq 500 (Monosiga brevicollis)

organism: Monosiga brevicollis


title: Illumina NextSeq 500 (Oenothera elata subsp. hookeri x Oenothera grandiflora)

status: Public on May 10 2021


title: Illumina NextSeq 500 (Oenothera elata subsp. hookeri)

organism: Oenothera elata subsp. hookeri


title: Illumina NovaSeq 6000 (Oenothera elata subsp. hookeri)


title: Illumina NovaSeq 6000 (Oenothera elata subsp. hookeri x Oenothera grandiflora)


title: Illumina NovaSeq 6000 (Monosiga brevicollis)


title: Illumina HiSeq 2500 (Ligilactobacillus salivarius)

organism: Ligilactobacillus salivarius


title: Illumina HiSeq 2500 (Astatotilapia calliptera)

status: Public on May 09 2021

organism: Astatotilapia calliptera


title: Illumina NovaSeq 6000 (Nilaparvata lugens)

organism: Nilaparvata lugens


title: UMGC Custom Multispecies miRNA microarray

status: Public on May 08 2021

city: Nanjing

first: Yan

last: Zeng

state: Jiangsu

address: XuanWu District, No.1 WeiGang

institute: Nanjing Agricultural University

organism: synthetic construct

technology: spotted oligonucleotide

distribution: non-commercial

manufacturer: Biomedical Genomics Center Microarray Facility at the University of Minnesota

manufacture_protocol: A miRNA probe set was purchased from Invitrogen, which was designed based on the Sanger miRBase Sequence Database, Release 9.0.  The set contains approximately 1,140 oligonucleotides of 34 to 44 nt long as probes.  They are complementary to C. elegans, Drosophila, zebrafish, mouse, rat, and human miRNAs, and also include a number of internal and negative control probes.  The oligonucleotides were dissolved in 3 x SSC and quadruply printed on Corning® GAPSTM II coated slides  using a BioRobotics Microgrid II spotter


title: Illumina HiSeq 3000 (Gossypium hirsutum)

organism: Gossypium hirsutum


title: Illumina NovaSeq 6000 (Astatotilapia calliptera)


title: HiSeq X Ten (Fragaria x ananassa)

organism: Fragaria x ananassa


title: Illumina NextSeq 500 (Myxococcus xanthus DK 1622)

status: Public on May 07 2021

organism: Myxococcus xanthus DK 1622


title: HiSeq X Ten (Acinetobacter baumannii)

organism: Acinetobacter baumannii


title: Illumina HiSeq 2500 (Collinsia rattanii)

status: Public on May 11 2021

organism: Collinsia rattanii


title: Illumina NextSeq 500 (Trichoplusia ni)

organism: Trichoplusia ni


title: Illumina HiSeq 4000 (Schmidtea mediterranea)

organism: Schmidtea mediterranea


title: Illumina HiSeq 2500 (Influenza A virus (A/Puerto Rico/8/1934(H1N1)); Mus musculus)

organism:
Mus musculus
Influenza A virus (A/Puerto Rico/8/1934(H1N1))


title: Illumina NextSeq 500 (Streptococcus pyogenes NZ131)

organism: Streptococcus pyogenes NZ131


title: Agilent-085697 Cdip

status: Public on May 06 2021

city: Silver Spring

first: Michael

last: Schmitt

address: 10903 New Hampshire Ave

institute: US Food and Drug Administration

organism: Corynebacterium diphtheriae

description:
Arrays of this design have barcodes that begin with 16085697 or 2585697.
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
Orientation:
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
The ID column represents the Agilent Feature Extraction feature number.
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (Larimichthys crocea)

organism: Larimichthys crocea


title: Illumina NovaSeq 6000 (Scophthalmus maximus)

organism: Scophthalmus maximus


title: MinION (Escherichia coli)

organism: Escherichia coli


title: DNBSEQ-G400 (Caenorhabditis tropicalis)

organism: Caenorhabditis tropicalis


title: Illumina HiSeq 2500 (Naupactus leucoloma)

organism: Naupactus leucoloma


title: DNBSEQ-G400 (Rattus norvegicus)

organism: Rattus norvegicus


title: DNBSEQ-G400 (Caenorhabditis elegans)

organism: Caenorhabditis elegans


title: Illumina NextSeq 500 (Eurytemora affinis)

status: Public on May 05 2021

organism: Eurytemora affinis


title: Illumina HiSeq 2000 (Vibrio cholerae O1 biovar El Tor str. N16961)


title: Illumina NextSeq 500 (Bacillus thuringiensis str. Al Hakam)

status: Public on May 04 2021

organism: Bacillus thuringiensis str. Al Hakam


title: RT² Profiler PCR Array (96-Well Format and 384-Well [4 x 96] Format) Human MYC Targets

city: Sapporo

first: Hajime

last: Nakamura

state: Hokkaido

address: South-1, West-16, Chuo-ku

department: Department of Medical Oncology

institute: Sapporo Medical University School of Medicine

organism: Homo sapiens

description:
see manufacturer's website
PCR assay

manufacture_protocol: see manufacturer's website


title: Aksomics/Arraystar nrStar Human snoRNA PCR Array [AS-NR-003-1]

city: Guangzhou

first: Wen-Tao

last: Wang

state: Guangdong

address: No. 135, Xingang Xi Road

department: School of Life Sciences

institute: sun yat sen university

manufacture_protocol:
see manufacturer's website http://www.aksomics.com/
https://www.arraystar.com/nrstar-snorna-pcr-array/


title: Illumina NextSeq 500 (Bacillus atrophaeus ATCC 9372)

organism: Bacillus atrophaeus ATCC 9372


title: DNBSEQ-G400 (Caenorhabditis briggsae)

organism: Caenorhabditis briggsae


title: Illumina HiSeq 4000 (Salmo salar)

organism: Salmo salar


title: Illumina NextSeq 500 (Bacillus megaterium QM B1551)

organism: Priestia megaterium QM B1551


title: Illumina HiSeq 3000 (Neurospora crassa)

organism: Neurospora crassa


title: Illumina NextSeq 500 (Geobacillus stearothermophilus ATCC 12980)


title: Illumina NextSeq 500 (Agrobacterium fabrum str. C58)

organism: Agrobacterium fabrum str. C58


title: DNBSEQ-G400 (Caenorhabditis kamaaina)

organism: Caenorhabditis kamaaina


title: Illumina HiSeq 2000 (Leishmania tropica)

organism: Leishmania tropica


title: Illumina HiSeq 4000 (Shigella flexneri 2a str. 2457T)

status: Public on May 03 2021

organism: Shigella flexneri 2a str. 2457T


title: NextSeq 2000 (Drosophila melanogaster)

status: Public on May 27 2021

organism: Drosophila melanogaster


title: Illumina HiSeq 2000 (Equus asinus)

organism: Equus asinus


title: Illumina HiSeq 4000 (human blood metagenome)

organism: human blood metagenome


title: Illumina HiSeq 2500 (Naupactus cervinus)

organism: Naupactus cervinus


title: Illumina HiSeq 2000 (Sparassis latifolia)

organism: Sparassis latifolia


title: Illumina NovaSeq 6000 (Homo sapiens; Human gammaherpesvirus 8)

organism:
Homo sapiens
Human gammaherpesvirus 8


title: Illumina NovaSeq 6000 (Clostridioides difficile)

organism: Clostridioides difficile


title: Illumina NextSeq 500 (Cucurbita pepo)

status: Public on May 02 2021

organism: Cucurbita pepo


title: Exiqon miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno (miRBase v18.0)

status: Public on May 01 2021

city: Shenyang

first: Pai

last: Pang

state: Liaoning

address: No. 117 Nanjing Bei Jie, Heping, Shenyang, Liaoning 110002, P.R. China

institute: China Medical University

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

manufacture_protocol: See manufacturer's website (www.exiqon.com).


title: Agilent-085927 Prochlorococcus AlohaProch array

city: Córdoba

first: Muñoz Marin

last: Maria del Carmen

state: Córdoba

address: Campus Rabanales

department: Bioquímica y Biología Molecular

institute: Universidad de Córdoba

organism: Prochlorococcus

description:
Environmental samples with ERCC control in each sample. The samples are cDNA amplified with WTA2 kit from Sigma.

Arrays of this design have barcodes that begin with 16085927 or 2585927.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: [RAE230A] Affymetrix Rat Expression Set 230 [CDF: Brainarray Entrez Gene version 19.0]

status: Public on Jun 02 2020

city: Ann Arbor

first: Megan

middle: Hastings

last: Hagenauer

state: MI

address: 205 Zina Pitcher Pl.

department: MBNI

institute: University of Michigan

organism: Rattus norvegicus

description: This Platform is identical to GPL341 but a custom cdf environment was used.

manufacture_protocol: See manufacturer's website (www.affymetrix.com).


title: Illumina HiSeq 2500 (Physarum polycephalum)

last: GEO

organism: Badhamia polycephala


title: Agilent-086074 Prochlorococcus Aloha_Prochl_3 array

description:
Agilent-086074 Aloha_Prochl_3 086056
Environmental samples with ERCC control in each. My samples are cDNA amplified with WTA2 from Sigma.

Arrays of this design have barcodes that begin with 16086074 or 2586074.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina NovaSeq 6000 (Homo)

organism: Homo


title: Agilent-085736 Pichia Pastoris  8x15k Gene Expression  (AMADID: 085736) designed by Genotypic Technology Private Limited

organism: Komagataella pastoris


title: HiSeq X Ten (Schizosaccharomyces pombe)

organism: Schizosaccharomyces pombe


title: Illumina HiSeq 2500 (Bifidobacterium animalis)

organism: Bifidobacterium animalis


title: [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]

status: Public on Aug 20 2013

city: Santa Clara

last: Affymetrix

institute: Affymetrix, Inc.

organism: Homo sapiens

description:
#%create_date=Wed Jan 22 15:39:59 2014 PST
#%chip_type=HTA-2_0
#%lib_set_name=HTA-2_0
#%lib_set_version=r1
#%genome-species=Homo sapiens
#%genome-version=hg19
#%genome-version-ucsc=hg19
#%genome-version-ncbi=GRCh37
#%genome-version-create_date=2009-02-00
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Homo sapiens
#%genome-lifted_from-version-ucsc=hg19
#%genome-lifted_from-version-ncbi=GRCh37
#%netaffx-annotation-date=2013-10-15
#%netaffx-annotation-netaffx-build=34

relation: Alternative to: GPL24082 (Alternative CDF)

relation: Alternative to: GPL24299 (Alternative CDF)

relation: Alternative to: GPL27634 (Alternative CDF[hta20_Hs_GENECODEG_22.0.0])

relation: Alternative to: GPL28102 (Alternative CDF [hta20_Hs_ENTREZG_22.0.0])

relation: Alternative to: GPL28460 (Alternative CDF [hta20_Hs_ENTREZG_23.0.0])

relation: Alternative to: GPL29735 (Alternative CDF [hta20_Hs_ENTREZG_24.0.0])

manufacture_protocol: See manufacturers website


title: NextSeq 2000 (Mus musculus)

status: Public on May 20 2021

organism: Mus musculus


title: NextSeq 2000 (Homo sapiens)