title: Fluidigm BioMark-qRT-PCR (Xenopus laevis)

status: Public on Sep 29 2021

city: Albuquerque

first: Rajanikanth

last: Vadigepalli

state: PA

address: 1 University of New Mexico

country: USA

institute: University of New Mexico

organism: Xenopus laevis

technology: RT-PCR

description: PCR assay

distribution: custom-commercial

manufacture_protocol: see manufacturer website


title: Microarrays of Bacillus encoded tRNAs [2020_bacillus.gal]

status: Public on Aug 18 2021

city: Hamburg

first: Zoya

last: Ignatova

address: Martin -Luther-King-Platz 6

country: Germany

institute: Universitaet Hamburg

organism: Enterococcus faecalis

technology: spotted oligonucleotide

distribution: non-commercial

manufacturer: Fraunhofer Institute for Biomedical Research (Potsdam, Germany)

manufacture_protocol:
1. Oligos were arrayed in 384 well plates with a final concentration of 10 µM in 3× SSC/0.01% SDS in a total volume of 25 µl.
2. Arrays were printed onto (3-Glycidyloxypropyl)trimethoxysilane (Sigma) activated glas slides using a contact-spotter (QArray 2, Moleculare Devices).
3. After spotting arrays were incubated overnight at 4°C in a humidified atmosphere and subsequently dried for 30 min at 30°C.
4. Arrays were stored in a dry atmosphere at room temperature until use.


title: Nanostring Human PanCancer Immune Panel [NS_CancerImmune_V1.1]

status: Public on Sep 15 2022

city: Nottingham

first: Sergio

last: Rutella

address: Clifton Campus

department: John van Geest Cancer Research Centre

country: United Kingdom

institute: Nottingham Trent University

organism: Homo sapiens

technology: other

manufacture_protocol: See manufacturer's website (http://www.nanostring.com)


title: NimbleGen Roseobacter denitrificans OCh114 12X135K array Univ. of Tokyo v2.0

status: Public on Jun 30 2021

city: Bunkyo-ku

first: Hiroyuki

last: Arai

state: Tokyo

address: Yayoi 1-1-1

department: Department of Biotechnology

country: Japan

institute: The University of Tokyo

organism: Roseobacter denitrificans OCh 114

technology: in situ oligonucleotide

description: NimbleGen Prokaryotic Expression array (12x135K).  A gene expression design for 4,129 sequences is based on the genome sequence of Roseobacter denitrificans OCh114.  The length of probes is 60-mer and the number of probes is 11 pairs per gene.  Each probe is replicated 3 times.  Probe sequences are available in the '2009-06-23_RDKK199_Rden_60mer_expr.ndf' supplementary file.

manufacture_protocol: High density DNA array prepared with Maskless Array Synthesizer (MAS) technology.


title: NimbleGen Roseobacter denitrificans OCh114 12X135K array Univ. of Tokyo v1.0


title: Illumina MiSeq (Pseudomonas aeruginosa 39016)

status: Public on Jun 29 2021

last: GEO

organism: Pseudomonas aeruginosa 39016

technology: high-throughput sequencing

distribution: virtual


title: NextSeq 2000 (Xanthomonas oryzae pv. oryzae)

status: Public on Jun 28 2021

organism: Xanthomonas oryzae pv. oryzae


title: Illumina HiSeq 2500 (Bradyrhizobium japonicum)

organism: Bradyrhizobium japonicum


title: Illumina NovaSeq 6000 (Chlamydia trachomatis 434/Bu; Homo sapiens)

status: Public on Jun 27 2021

organism:
Homo sapiens
Chlamydia trachomatis L2/434/Bu


title: NextSeq 550 (Chlamydia trachomatis 434/Bu; Homo sapiens)


title: Illumina HiSeq 2500 ([Candida] auris; Homo sapiens)

organism:
Homo sapiens
Candidozyma auris


title: Custom-built NanoString Mouse Complement Panel 59 v1.0

city: Charleston

first: Amer

last: Toutonji

state: SC

address: 173 Ashley Ave, CRI204

institute: Medical University of South Carolina

organism: Mus musculus

manufacture_protocol: oligonucleotide probes tagged with identifiers consisting of a unique sequences of multi-color fluorophores


title: Illumina HiSeq 2500 (Clostridium sp. IBUN13A)

status: Public on Jun 26 2021

organism: Clostridium sp. IBUN13A


title: NanoString nCounter CAR-T Characterization Panel (human, “immunological synapse” enrichment)

city: Monza

first: Sarah

last: Tettamanti

address: via Pergolesi, 33

country: Italy

institute: M.Tettamanti Research Center

description: nCounter® CAR-T Characterization Panel (Nanostring) enriched with 16 additional gene-specific probes for genes involved in the “immunological synapse” (ALCAM, CD37, CD53, CD81, DLG1, FN1, FOXP1, CD11a, LGALS3, MYH9, NFATc2, NFATc3, NFATc4, NUMB, SCIMP, VHL).

manufacture_protocol: See manufacturer's website (www.nanostring.com)


title: Agilent-074809 SurePrint G3 Mouse GE v2 8x60K Microarray [AMADID: 074809; gene-based]

status: Public on Jun 24 2021

city: MUMBAI

first: PRIYANKA

last: PARTE

state: MAHARASTRA

address: J M STREET

department: GAMETE IMMUNOBIOLOGY

country: India

institute: ICMR-NIRRH

description: A different version of this platform with the Agilent Feature Number -or- Probe Name in the ID column is assigned accession number GPL21810 and GPL21163, respectively.

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: NextSeq 550 (Aspergillus fumigatus)

organism: Aspergillus fumigatus


title: Illumina HiSeq 2500 (blank sample)

status: Public on Jun 25 2021

organism: blank sample


title: Exiqon miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno [208500-2,208510,208520-2; Lot 35110]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

organism:
Homo sapiens
Mus musculus
Rattus norvegicus

description:
Product=miRCURY LNA microRNA Array, 7th generation - hsa, mmu & rno [208500-2,208510,208520-2; Lot 35110]
ProductDate=March 2012
ProductNumber=208500,208501,208502,208510,208520,208521,208522
LotNumberRange=35110-35110
ArrayContents_DesignedFor=miRBase 18.0
ArrayContents_CurrentNameColumn=miRBase 21.0
ArrayContents_CurrentNameColumnCoverage=Homo sapiens and related vira:74.85%

manufacture_protocol: See manufacturers website


title: Illumina HiSeq 4000 (Inopus flavus)

organism: Inopus flavus


title: Illumina HiSeq 2000 (Colletotrichum orbiculare)

organism: Colletotrichum orbiculare


title: UCI#1 Influenza antigen array

city: Irvine

first: David

middle: Huw

last: Davies

state: CA

address: 812 Medical Plaza Drive, Med Surge II, Rm 376

department: Physiology & Biophysics

institute: UC Irvine

organism:
Influenza A virus
Influenza B virus

technology: spotted peptide or protein

description:
UCI#1 Influenza array
Spotted purified influenza virus antigens.
Antigens expressed in HEK or insect cells (Sinobiological Inc).

manufacturer: Vaccine Research & Development Center (Protein Microarray Lab), University of California, Irvine.

manufacture_protocol:
See manufacturer website.
Taghavian O, et al. 2018. Antibody Profiling by Proteome Microarray with Multiplex Isotype Detection Reveals Overlap between Human and Aotus nancymaae Controlled Malaria Infections. Proteomics. Jan;18(2):10.1002/pmic.201700277. doi: 10.1002/pmic.201700277..
Khan S, et al. 2019. Use of an influenza antigen microarray to measure the breadth of serum antibodies across virus subtypes. J Vis Exp 149 e59973.


title: Illumina NextSeq 500 (Lacticaseibacillus casei)

status: Public on Jun 22 2021

organism: Lacticaseibacillus casei


title: Illumina NovaSeq 6000 (Phrynocephalus versicolor)

organism: Phrynocephalus versicolor


title: Illumina NovaSeq 6000 (Klebsormidium nitens)

status: Public on Jun 23 2021

organism: Klebsormidium nitens


title: Illumina HiSeq 3000 (Nannochloropsis oceanica strain IMET1)

organism: Nannochloropsis oceanica strain IMET1


title: NanoString nCounter Mouse Neuroinflammation Panel 757 v1.0

distribution: commercial

manufacturer: Nanostring nCounter Mouse Neuroinflammation Panel 757 v1.0


title: Illumina NextSeq 500 (Entamoeba histolytica)

status: Public on Jun 20 2021

organism: Entamoeba histolytica


title: NanoString nCounter Rat miRNA Expression Assay, V1.1 with all controls

organism: Rattus norvegicus


title: Illumina NextSeq 500 (Macaca fuscata)

organism: Macaca fuscata


title: Illumina HiSeq 2000 (Streptomyces lividans)

status: Public on Jun 18 2021

organism: Streptomyces lividans


title: NanoString nCounter Human gene expression custom codeset

city: Fukuoka

first: Kohta

last: Miyawaki

address: 3-1-1, Maidashi, Higashi-ku

institute: Kyushu University

organism: Homo sapiens

manufacture_protocol: See manufacturers website (http://www.nanostring.com)


title: Agilent-063969 Bos taurus miRNA array [miRNA version]

city: Morioka

first: Keiichiro

last: Kizaki

state: Iwate

department: Vet. Med.

institute: Iwate University

organism: Bos taurus

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: BGISEQ-500 (Beauveria bassiana ARSEF 2860)

organism: Beauveria bassiana ARSEF 2860


title: Illumina NovaSeq 6000 (Cuscuta campestris)

status: Public on Jun 17 2021

organism: Cuscuta campestris


title: Illumina HiSeq 2500 (Cryptococcus neoformans var. neoformans JEC21)

organism: Cryptococcus deneoformans JEC21


title: Ion Torrent PGM (Bos taurus)


title: Illumina NovaSeq 6000 (Pimephales promelas)

organism: Pimephales promelas


title: Illumina HiSeq 2500 (Frankia inefficax)

status: Public on Jun 16 2021

organism: Pseudofrankia inefficax


title: Illumina Hiseq 4000 (Homo sapiens)


title: NextSeq 550 (Cryptococcus neoformans var. neoformans JEC21)


title: Illumina HiSeq 4000 (Parhyale hawaiensis)

organism: Parhyale hawaiensis


title: Illumina NextSeq 500 (Tupaia belangeri)

status: Public on Jun 15 2021

organism: Tupaia belangeri


title: Illumina Genome Analyzer IIx (Chlorocebus sabaeus)

organism: Chlorocebus sabaeus


title: Qiagen human SYBR green-based real-time PCR miRNA array [MZ117]

city: FORT WORTH

first: Tara

last: Tovar-Vidales

state: TX

address: 3500 Camp Bowie

department: Pharmacology & Neuroscience

institute: UNTHSC

description: PCR assay

manufacture_protocol: see manufacturer's website


title: Agilent-085202 LC Human ceRNA array [probe name version]

city: jinan

first: Bing

last: Li

address: Wenhua Xi Road 107

country: China

institute: Qilu Hospital


title: Illumina NovaSeq 6000 (Homo sapiens; synthetic construct)

organism:
Homo sapiens
synthetic construct


title: Illumina HiSeq 2000 (Argopecten irradians concentricus)

status: Public on Jun 14 2021

organism: Argopecten irradians concentricus


title: Illumina HiSeq 2500 (Coccidioides posadasii str. Silveira)

organism: Coccidioides posadasii str. Silveira


title: Illumina HiSeq 2500 (Spathaspora passalidarum)

organism: Spathaspora passalidarum


title: HiSeq X Five (Danio rerio)

organism: Danio rerio


title: HiSeq X Ten (Taeniopygia guttata)

status: Public on Jun 12 2021

organism: Taeniopygia guttata


title: Illumina HiSeq 3000 (Neisseria gonorrhoeae)

status: Public on Jun 11 2021

organism: Neisseria gonorrhoeae


title: Illumina HiSeq 2500 (Listeria innocua)

status: Public on Jun 10 2021

organism: Listeria innocua


title: Illumina NovaSeq 6000 (Arabidopsis thaliana; Phtheirospermum japonicum)

organism:
Arabidopsis thaliana
Phtheirospermum japonicum


title: Illumina NextSeq 500 (Azoarcus olearius)

status: Public on Jun 09 2021

organism: Azoarcus olearius


title: Agilent-064677_IRHS_AryANE_v1 [AryANE ID version]

city: Angers

first: Alexandre

last: Degrave

address: André Lenôtre

country: France

institute: Agrocampus Ouest

organism: Malus domestica


title: Illumina NextSeq 500 (Eimeria acervulina)

organism: Eimeria acervulina


title: DNBSEQ-G400 (Saccharomyces cerevisiae)

organism: Saccharomyces cerevisiae


title: Illumina HiSeq 3000 (Lens orientalis)

status: Public on Jun 08 2021

organism: Lens orientalis


title: Illumina HiSeq 3000 (Lens culinaris)

organism: Lens culinaris


title: Illumina HiSeq 3000 (Lens culinaris x Lens orientalis)

organism: Lens culinaris x Lens orientalis


title: Illumina NovaSeq 6000 (Staphylococcus aureus subsp. aureus MSSA476)


title: DNBSEQ-G400 (Ovis aries)

organism: Ovis aries


title: Illumina HiSeq 3000 ([Candida] auris)

organism: Candidozyma auris


title: nCounter PanCancer Immune Profiling Panel [Mouse]

status: Public on Jun 21 2021

organism: Mus musculus


title: Illumina HiSeq 4000 (Trichoderma guizhouense)

organism: Trichoderma guizhouense


title: Illumina MiSeq (Ustilago maydis)

status: Public on Jun 07 2021

organism: Mycosarcoma maydis


title: DNBSEQ-T7 (Danio rerio)

organism: Danio rerio


title: Illumina HiSeq 2000 (Trypanosoma cruzi)

organism: Trypanosoma cruzi


title: HiSeq X Ten (Mus musculus x Mus spretus)

organism: Mus musculus x Mus spretus


title: Illumina HiSeq 2500 (Paraburkholderia phymatum STM815; Phaseolus vulgaris)

organism:
Phaseolus vulgaris
Paraburkholderia phymatum STM815


title: Agilent-063815 DappuGE60Kfrozen

city: Vicksburg

first: Kurt

middle: A

last: Gust

state: MS

address: 3909 Halls Ferry Rd.

department: Environmental Laboratory

institute: US Army ERDC

organism: Daphnia pulex

description:
Two probes per frozen gene model, plus up to 4 probes per earthworm transcirpt (104 GB ESTs), with the remaining 382 spots filled with randomly picked DappuGE60Kfrozen probes.

Arrays of this design have barcodes that begin with 16063815 or 2563815.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: Illumina HiSeq 2500 (Punica granatum)

status: Public on Jun 13 2021

organism: Punica granatum


title: Illumina NovaSeq 6000 (Cucumis melo)

organism: Cucumis melo


title: nCounter PanCancer Pathways Panel Kit

city: ROMA

first: domenico

last: raimondo

state: RM

address: Viale Regina Elena 324

department: Molecular Medicine

institute: Sapienza University of Rome

organism: Homo sapiens

manufacture_protocol: See manufacturer's web site


title: Illumina HiSeq 2500 (Phalaenopsis x intermedia)

status: Public on Jun 05 2021

organism: Phalaenopsis x intermedia


title: BGISEQ-500 (Gossypium hirsutum)

organism: Gossypium hirsutum


title: Illumina MiSeq (Homo sapiens; Severe acute respiratory syndrome coronavirus 2)

status: Public on Jun 06 2021

organism:
Homo sapiens
Severe acute respiratory syndrome coronavirus 2


title: Illumina MiSeq (Phalaenopsis x intermedia)


title: Illumina NovaSeq 6000 (Medicago truncatula)

organism: Medicago truncatula


title: Illumina NovaSeq 6000 (Staphylococcus epidermidis)

organism: Staphylococcus epidermidis


title: Illumina NovaSeq 6000 (Staphylococcus aureus subsp. aureus MRSA252)


title: Illumina NextSeq 500 (Deinococcus radiodurans)

organism: Deinococcus radiodurans


title: NanoString nCounter Human gene expression custom codeset

city: Calgary

first: Sorana

last: Morrissy

state: Alberta

address: 3310 Hospital Dr NW

department: Biochemistry and Molecular Biology

country: Canada

institute: Univeristy of Calgary


title: Illumina NovaSeq 6000 (Frankia inefficax)

organism: Pseudofrankia inefficax


title: Illumina NovaSeq 6000 (Corylus heterophylla)

status: Public on Jun 04 2021

organism: Corylus heterophylla


title: Illumina HiSeq 4000 (Pterula gracilis)

organism: Pterulicium gracile


title: Illumina HiSeq 4000 (Pleurotus ostreatus)

organism: Pleurotus ostreatus


title: HiSeq X Ten (Anopheles stephensi)

status: Public on Jun 03 2021

organism: Anopheles stephensi


title: [PrimeView] Affymetrix Human Gene Expression Array [Gene-level]

city: Fuzhou

first: Guanxian

last: Guan

state: China

address: 20 Chazhong Road

department: Department of Colorectal Surgery

institute: The First Affiliated Hospital of Fujian Medical University

description: This is identical to GPL15207 but a custom CDF environment was used to extract data

manufacture_protocol: See details from Affymetrix.


title: NanoString custom DLBCL geneset

city: Leiden

first: Ruben

last: de Groen

address: Albinusdreef 2

department: Hematology

country: Netherlands

institute: Leiden University Medical Center

manufacturer: NanoString Technologies, Inc.; Seattle, WA


title: Illumina HiSeq 2500 (Acropora tenuis)

status: Public on Jun 02 2021

organism: Acropora tenuis


title: Custom TaqMan® miRNA RT-qPCR Low Density Array_DCV Biomarker Panel

city: Lexington

first: Wang-Xia

last: Wang

state: Kentucky

address: 800 S Limestone

institute: University of Kentucky

description:
PCR assay
TaqMan assay
Custom TaqMan® miRNA RT-qPCR Low Density Array


title: Nanostring nCounter Human

status: Public on Jun 01 2021

city: Boston

first: Sonu

last: Subudhi

state: MA

address: 100 Blossom St, Cox 7

department: Radiation Oncology

institute: Massachusetts General Hospital

description: molecular barcode technology (probe based)


title: [PrimeView] Affymetrix Human Gene Expression Array [CDF: primeviewhsentrezgaltrabio183641.cdf]

city: Lyon

first: Simon

last: de Bernard

address: 30 rue Pré Gaudry

institute: AltraBio

description: This Platform is identical to GPL15207 but a custom CDF environment was used to extract data.

relation: Alternative to: GPL15207 (Alternative CDF [official])

manufacture_protocol: see manufacturer's web site


title: Illumina HiSeq 2000 (Dietzia sp. DQ12-45-1b)

last: GEO

organism: Dietzia sp. DQ12-45-1b


title: Illumina HiSeq 3000 (Limnospira indica PCC 8005)

organism: Limnospira indica PCC 8005


title: Illumina NextSeq 500 (Deinococcus radiodurans R1)

organism: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539


title: Agilent-064677_IRHS_AryANE_v1

status: Public on May 30 2019

city: BEAUCOUZE

first: Sandra

last: Pelletier

address: 42, rue Georges Morel - BP 60057

institute: INRA

organism: Malus domestica

relation: Alternative to: GPL30258 (AryANE ID version)


title: Illumina NovaSeq 6000 (Salmonella enterica subsp. enterica serovar Typhimurium)


title: Illumina NextSeq 500 (Homo sapiens; Human endogenous retroviruses)

organism:
Homo sapiens
Human endogenous retroviruses


title: Illumina HiSeq 2000 (Alternaria oxytropis)

organism: Alternaria oxytropis


title: Arraystar LncPath Human Epithelial to Mesenchymal Transition (EMT) Array

city: Rockville

first: Panos

last: Pan

address: 9430 Key West Avenue

institute: Arraystar Inc.

organism: Homo sapiens


title: HiSeq X Ten (Xenopus tropicalis)

organism: Xenopus tropicalis


title: MGISEQ-2000RS (Callithrix jacchus)

status: Public on Jun 29 2021

organism: Callithrix jacchus


title: MGISEQ-2000RS (Mus musculus)

organism: Mus musculus