title: Custom OpenArray "brain-specific miRNA array" panel

status: Public on Jul 30 2021

city: Raebareli

first: SANJAY

last: YADAV

state: UTTAR PRADESH

address: All India Institute of Medical Sciences Dalmau Road, Munshiganj,

country: India

institute: AIIMS RAEBARLI

organism: Rattus norvegicus

technology: RT-PCR

description:
Rat Brain Specific miRNA Custom TaqMan OpenArray Real-Time PCR Plates containing 112 miRNA primers and 24 samples capacity
catalog number:4470813

distribution: virtual

manufacture_protocol: see manufacturer's website


title: TaqMan Low Density Array

status: Public on Jul 31 2021

city: Aurora

first: Danielle

middle: A.

last: Jeffrey

state: CO

department: Pharmacology

country: USA

institute: University of Colorado

organism: Homo sapiens

description: PCR assay

manufacture_protocol: See manufacturer's website.


title: SOMAscan human proteomic assay

technology: spotted peptide or protein

distribution: custom-commercial


title: BGISEQ-500 (Handeliodendron bodinieri)

last: GEO

organism: Handeliodendron bodinieri

technology: high-throughput sequencing


title: Illumina NovaSeq 6000 (Mus musculus musculus x M. m. castaneus)

organism: Mus musculus musculus x Mus musculus castaneus


title: NextSeq 550 (Luteibacter sp. 9143a)

status: Public on Jul 29 2021

organism: Luteibacter mycovicinus


title: NextSeq 550 (Pestalotiopsis sp. 9143b)

organism: Pestalotiopsis sp. 9143b


title: NimbleGen 120629_Sus_scrofa_TJ array

city: Nanjing

first: Bin

last: Li

state: Jiangsu

address: 50# Zhongling Street

department: Institute of Veterinary Medicine

country: China

institute: Jiangsu Academy of Agricultural Sciences

organism: Sus scrofa

technology: in situ oligonucleotide

manufacture_protocol: see manufacture's web site www.nimbleGen.com


title: HiSeq X Ten (Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344)


title: Illumina HiSeq 2000 (Oryza longistaminata)

status: Public on Jul 28 2021

organism: Oryza longistaminata


title: Illumina NextSeq 500 (Homo sapiens; Human gammaherpesvirus 4)

organism:
Homo sapiens
human gammaherpesvirus 4


title: Illumina NovaSeq 6000 (Actinobacillus pleuropneumoniae)

organism: Actinobacillus pleuropneumoniae


title: Illumina NextSeq 500 (Drosophila ananassae)

status: Public on Jul 27 2021

organism: Drosophila ananassae


title: Illumina NextSeq 500 (Nostoc punctiforme PCC 73102)

organism: Nostoc punctiforme PCC 73102


title: Illumina NextSeq 500 ([Ruminococcus] gnavus)

status: Public on Jul 26 2021

organism: Mediterraneibacter gnavus


title: Agilent-084561 Pfalciparum15K_Dec16

city: Barcelona

first: Oriol

last: Llorà-Batlle

address: Carrer Rosselló 153, 1st floor

country: Spain

institute: ISGlobal

organism: Plasmodium falciparum

description:
Based on 037237 design (Llinás lab), with some new probes added by E. Tintó (Cortés lab).

Arrays of this design have barcodes that begin with 16084561 or 2584561.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

distribution: commercial

manufacture_protocol: see manufacturer's web site at http://www.agilent.com/


title: Illumina HiSeq 4000 (human saliva metagenome)

status: Public on Jul 25 2021

organism: human saliva metagenome


title: DNBSEQ-T7 (Homo sapiens; Mus musculus)

organism:
Homo sapiens
Mus musculus


title: Illumina HiSeq 4000 (human lung metagenome)

organism: human lung metagenome


title: Utz Lab autoantigen protein microarray v1

status: Public on Jul 24 2021

city: Stanford

first: Allan

last: Feng

state: CA

address: 269 Campus Dr

department: Imm/Rheum

institute: Stanford School of Medicine

organism:
Escherichia coli
Triticum aestivum
Spodoptera frugiperda
Homo sapiens
Sus scrofa
Bos taurus
Capra aegagrus
Cricetulus griseus

distribution: non-commercial

manufacture_protocol: Antigens were conjugated to magnetic barcoded beads (MagPlex® Microspheres). In brief, unless stated otherwise, 8 ug of each antigen or control antibody was diluted in phosphate buffered saline (PBS) and transferred to 96-well plates. Diluted antigens and control antibodies were conjugated to 1×10^6 carboxylated magnetic beads per ID.


title: Sgr array

city: Busan

first: Seonock

last: Woo

address: Haeyangro 385

country: South Korea

institute: Korea Institute of Ocean Science and Technology

organism: Scleronephthya gracillimum

technology: spotted oligonucleotide

manufacture_protocol: The S. gracillimum microarray was constructed after RNA-seq, UniGene identification, and oligonucleotides constructions. Clones were annotated using Blast.


title: Illumina HiSeq 4000 (Plasmodium falciparum NF54)

status: Public on Jul 22 2021

organism: Plasmodium falciparum NF54


title: Illumina NovaSeq 6000 (Caenorhabditis elegans; Drosophila melanogaster; Homo sapiens; human feces metagenome; Saccharomyces cerevisiae)

organism:
Saccharomyces cerevisiae
Caenorhabditis elegans
Drosophila melanogaster
Homo sapiens
human feces metagenome


title: Utz Lab cytokine/chemokine protein microarray


title: MinION (Caenorhabditis elegans; Drosophila melanogaster; Homo sapiens; human feces metagenome; Saccharomyces cerevisiae)


title: Agilent-086000 Human CHr6 G4125A

city: Houston

first: Christopher

last: Grochowski

state: Texas

address: 1 Baylor Plaza

department: Molecular and Human Genetics

institute: Baylor College of Medicine

organism: Homo sapiens

description:
Arrays of this design have barcodes that begin with 16086000 or 2586000

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.


title: HiSeq X Ten (unidentified plasmid)

status: Public on Jul 23 2021

organism: unidentified plasmid


title: Illumina HiSeq 2500 (Glyptonotus antarcticus)

organism: Glyptonotus antarcticus


title: Illumina HiSeq 4000 (Diaphorina citri)

organism: Diaphorina citri


title: UGA#2 IBV array

city: Athens

first: Daniel

middle: Roberto

last: Perez

state: GA

address: 953 College Station Road

institute: University of Georgia

organism: Influenza A virus

description:
UGA#2 IBV array
Spotted purified influenza virus antigens.
Antigens expressed in HEK or insect cells (Sinobiological Inc).

manufacturer: Vaccine Research & Development Center (Protein Microarray Lab), University of California, Irvine.

manufacture_protocol:
Taghavian O, et al. 2018. Antibody Profiling by Proteome Microarray with Multiplex Isotype Detection Reveals Overlap between Human and Aotus nancymaae Controlled Malaria Infections. Proteomics. Jan;18(2):10.1002/pmic.201700277. doi: 10.1002/pmic.201700277..
Khan S, et al. 2019. Use of an influenza antigen microarray to measure the breadth of serum antibodies across virus subtypes. J Vis Exp 149 e59973.


title: Illumina NextSeq 500 (Drosophila melanogaster; Schmidtea mediterranea)

status: Public on Jul 21 2021

organism:
Drosophila melanogaster
Schmidtea mediterranea


title: MinION (Equus grevyi)

organism: Equus grevyi


title: Illumina HiSeq 4000 (Citrus macrophylla)

organism: Citrus macrophylla


title: H12O Homo sapiens 255 v1.0

city: Madrid

first: Alberto

last: Utrero-Rico

address: Av Cordoba s/n

technology: other


title: Illumina HiSeq 4000 (Citrus x paradisi)

organism: Citrus x paradisi


title: Phalanx Human miRNA OneArray v7.2

city: Zhubei City

first: Jun-Jie

last: Hong

state: Hsinchu County

address: 4F, No.66 Shengyi Road 5th

country: Taiwan

institute: Phalanx Biotech Group

manufacture_protocol: See https://www.phalanx.com.tw/ for updated protocols


title: DNBSEQ-T7 (Chlorocebus sabaeus)

status: Public on Jul 19 2021

organism: Chlorocebus sabaeus


title: Custom TaqMan® Gene Expression Array Cards  Inflammatory Response [Catalog# 4342253]

status: Public on Jul 20 2021

city: Lyon

first: Pauline

last: Bade

address: 40 avenue Tony Garnier

country: France

institute: Evotec LYON ID SAS

description:
Custom TaqMan® Gene Expression Assay Pre-load 384-well microfluidic cards
Each card permits to  run 8 samples and quantify 48 genes incuding inflammatory response related genes and endogenous controls


title: Illumina HiSeq 2500 (Pleurodeles waltl)

organism: Pleurodeles waltl


title: Illumina NovaSeq 6000 (Marchantia polymorpha subsp. ruderalis)

organism: Marchantia polymorpha subsp. ruderalis


title: Illumina NextSeq 500 (Mus musculus; Plasmodium cynomolgi)

status: Public on Jul 16 2021

organism:
Plasmodium cynomolgi
Mus musculus


title: Utz Lab autoantigen protein microarray v2

organism:
Escherichia coli
Triticum aestivum
Spodoptera frugiperda
Homo sapiens
Sus scrofa
Bos taurus
Capra aegagrus
Cricetulus griseus


title: Illumina NovaSeq 6000 (Prunus sibirica)

organism: Prunus sibirica


title: LAM Subarray 63 - Antigens 10/22/2017

city: Bronx

first: Jacqueline

last: Achkar

address: 1300 Morris Park Ave.

institute: Albert Einstein College of Medicine

organism: synthetic construct

description: NA - Synthetic antigens coupled to bovine serum albumin

manufacturer: Todd Lowary, University of Alberta and Engineering Arts Tempe Arizona

manufacture_protocol: Microarray slides were printed at Engineering Arts LLC (Phoenix, AZ). BSA conjugates were noncontact printed on Schott type E slides (Schott North America, Inc., Elmsford, NY) using an Engineering Arts au301 Rainmaker microarray printer and dispensed at 100 μg/mL in buffer (1:10 phosphate-buffered saline plus 0.005% vol/vol Triton X-100). Antigens were dispensed at 360 pL per spot to produce 140- to 160-m diameter spots in triplicate. Relative humidity was maintained at 65%; slides were subjected to white light for 100% inline drop inspection. Printing was carried out in a HEPA-filtered environment at room temperature. Printed slides were stored at –20 °C until use. Each slide contains 24 identical array containing 30 components printed in duplicate.


title: DNBSEQ-G50 (Lactuca sativa)

status: Public on Jul 15 2021

organism: Lactuca sativa


title: Utz Lab viral protein microarray


title: Phalanx Mouse & Rat miRNA OneArray

status: Public on Jul 17 2021

city: Taipei

first: I-Fang

last: Wang

address: Academia Rd.

department: Institute of Molecular Biology

institute: Academia Sinica

organism: Mus musculus

description: The Phalanx Mouse & Rat miRNA OneArray includes mouse and rat probes. This Platform includes only mouse probes.

manufacture_protocol: See manufacturer website.


title: Illumina NovaSeq 6000 (Liriodendron chinense)

status: Public on Jul 14 2021

organism: Liriodendron chinense


title: NimbleGen Gluconacetobacter xylinus 4x72K custom [110530_RDKK307_Gxyl_expr_X4]

city: Hanada-shi

first: Seiji

last: Watanabe

address: Nakamura-cho

department: Central Research Institute

country: Japan

institute: Mizkan Group Co. Ltd

organism: Komagataeibacter medellinensis NBRC 3288

description:
NimbleGen design name 110530_RDKK307_Gxyl_expr_X4, NimbleGen design ID 553981. A 1:2 expression design for 3,193 genes from Gluconacetobacter xylinus NBRC 3288 and associated seven plasmid with twenty-one 60-mer probe pairs (PM) per gene.  Each probe is replicated 3 times.
native array description file: 110530_RDKK307_Gxyl_expr.ndf
native array description file: 110530_RDKK307_Gxyl_expr.ngd

manufacture_protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/


title: Illumina NovaSeq 6000 (Mycobacterium tuberculosis variant bovis BCG)

status: Public on Jul 12 2021


title: Illumina NovaSeq 6000 (Aspergillus flavus)

status: Public on Jul 13 2021

organism: Aspergillus flavus


title: Illumina HiSeq 4000 (Azospirillum brasilense)

status: Public on Jul 08 2021

organism: Azospirillum brasilense


title: NextSeq 2000 (Homo sapiens; Mus musculus; Severe acute respiratory syndrome coronavirus 2)

organism:
Homo sapiens
Mus musculus
Severe acute respiratory syndrome coronavirus 2


title: Illumina NextSeq 500 (Daucus carota subsp. sativus)

status: Public on Jul 10 2021

organism: Daucus carota subsp. sativus


title: Illumina NovaSeq 6000 (Haemophilus influenzae; Homo sapiens)

organism:
Haemophilus influenzae
Homo sapiens


title: TaqMan Array Human MicroRNA A+B Card Sets v3.0 [Cat. no. A31805]

status: Public on Jul 09 2021

city: Dijon

first: Baptiste

last: Lamarthée

address: Bd du Mal De Lattre de Tassigny

department: RIGHT

institute: Inserm U1098

organism: Homo sapiens

description: TaqMan Advanced miRNA Human A and B Cards


title: Illumina NextSeq 500 (Neovison vison)

status: Public on Jul 11 2021

organism: Neogale vison


title: Illumina HiSeq 4000 (Populus trichocarpa)

organism: Populus trichocarpa


title: Illumina MiSeq (Yarrowia lipolytica)

status: Public on Jul 07 2021

organism: Yarrowia lipolytica


title: Illumina HiSeq 2500 (solid waste metagenome)

organism: solid waste metagenome


title: Illumina HiSeq 2500 (sludge metagenome)

organism: sludge metagenome


title: GeoChip 4.0-Nimblegen

city: Overton

first: Anil

last: Somenahally

department: Texas AgriLife Research

institute: Texas A&M University

organism: soil metagenome

manufacture_protocol: see manufacturer's web site www.nimblegen.com


title: Illumina NovaSeq 6000 (Saccharomyces cerevisiae W303)

organism: Saccharomyces cerevisiae W303


title: PromethION (Danio rerio)

organism: Danio rerio


title: Illumina NextSeq 500 (Phodopus sungorus)

organism: Phodopus sungorus


title: Illumina HiSeq 2000 (rat gut metagenome)

organism: rat gut metagenome


title: Illumina NovaSeq 6000 (Planococcus citri)

organism: Planococcus citri


title: illumina novaseq 6000 (Mus musculus)

organism: Mus musculus


title: Illumina NextSeq 500 (Priestia endophytica)

status: Public on Jul 06 2021

organism: Priestia endophytica


title: Illumina NextSeq 500 (Trochodendron aralioides)

organism: Trochodendron aralioides


title: Illumina NovaSeq 6000 (Bos grunniens)

organism: Bos grunniens


title: Illumina NextSeq 500 (Plasmodium cynomolgi)

organism: Plasmodium cynomolgi


title: Illumina HiSeq 2000 (Stylosanthes guianensis)

organism: Stylosanthes guianensis


title: Illumina NovaSeq 6000 (Marmota monax)

organism: Marmota monax


title: COFC human tRNA array 384 v1.0

city: Charleston

first: Renaud

last: Geslain

state: SC

address: 58 Coming Street

department: Biology

institute: College of Charleston

organism: Homo sapiens

manufacturer: Laboratory of tRNA biology, College of Charleston, Charleston USA

manufacture_protocol: tRNA microarrays were printed manually on amine coated-slides glass slides (Molecular Devices, K2615) with 48 synthetic DNA oligonucleotides (IDT) at 50 µM in 3 X SSC, 0.01% (w/v) SDS using a commercial eight-pin arrayer and a glass slide indexing system (V&P Scientific, Inc., VP 470 and VP 478 respectively). Printed array were crosslinked at 254 nm with 999,999 µJ/cm2 on a Spectroline UV crosslinker (Select series 254 nm) and blocked overnight in 450 mL of blocking solution (125 mM phosphate buffer (NaH2PO4/Na2HPO4-) pH 7.2, 2.25 % SDS (w/v), 0.5 mM EDTA, 0.5 X SSC and 1 % BSA (w/v)) on a magnetic stirrer, at room temperature and under slow agitation. Prior to hybridization blocked arrays were rinsed in boiling water and dried by centrifugation. For a complete, step-by-step protocol, please refer to Emetu et al., 2018 (doi: 10.3791/56898)


title: NextSeq 550 (Vibrio cholerae H1)

organism: Vibrio cholerae H1


title: Illumina HiSeq 2000 (Chilo suppressalis)

organism: Chilo suppressalis


title: Illumina HiSeq 2000 (Enterovirus A71)

organism: Enterovirus A71


title: UGA#1 Influenza antigen array

status: Public on Jul 05 2021

organism:
Influenza A virus
Influenza B virus

description:
UGA#1 IAV array
Spotted purified influenza virus antigens.
Antigens expressed in HEK or insect cells (Sinobiological Inc).

manufacture_protocol:
See manufacturer website.
Taghavian O, et al. 2018. Antibody Profiling by Proteome Microarray with Multiplex Isotype Detection Reveals Overlap between Human and Aotus nancymaae Controlled Malaria Infections. Proteomics. Jan;18(2):10.1002/pmic.201700277. doi: 10.1002/pmic.201700277..
Khan S, et al. 2019. Use of an influenza antigen microarray to measure the breadth of serum antibodies across virus subtypes. J Vis Exp 149 e59973.


title: Illumina HiSeq 4000 (Agaricus bisporus)

organism: Agaricus bisporus


title: Illumina HiSeq 4000 (Aspergillus flavus)

organism: Aspergillus flavus


title: MGISEQ-2000RS (Pythium oligandrum)

status: Public on Jul 03 2021

organism: Pythium oligandrum


title: Illumina MouseRef-8 v2.0 expression beadchip [NuID version]

city: Bethesda

first: GEO

last: admin

state: MD

address: 9000 Rockville Pike

institute: NCBI/NLM/NIH

technology: oligonucleotide beads

manufacture_protocol: See manufacturer's web site.


title: Illumina NextSeq 500 (Coccidioides immitis)

last: GEO

organism: Coccidioides immitis


title: Illumina NovaSeq 6000 (Bacillus subtilis subsp. subtilis str. 168)


title: MGISEQ-2000RS (Pythium myriotylum; Pythium oligandrum)

organism:
Pythium oligandrum
Pythium myriotylum


title: MGISEQ-2000RS (Pythium myriotylum)

organism: Pythium myriotylum


title: Illumina NovaSeq 6000 (Tachysurus fulvidraco x Tachysurus vachelli)


title: Illumina NovaSeq 6000 (Carya illinoinensis)

status: Public on Jul 02 2021

organism: Carya illinoinensis


title: DNBSEQ-T7 (Bassia scoparia)

organism: Bassia scoparia


title: LC Sciences MRA-1001B2 Human miRNA Array [miRHuman_21]

city: Kansas City

first: Zohreh

last: Talebizadeh

state: MO

address: 2401 Gillham Road

institute: Children's Mercy Hospital

manufacture_protocol: See manufacturer's website (www.lcsciences.com).


title: Illumina NextSeq 500 (Sipunculus nudus)

status: Public on Jul 01 2021

organism: Sipunculus nudus


title: Agilent-084409 Rat lncRNA Microarray V3 (8*60K)

city: Jinan

first: Gongchang

last: Yu

state: Shandong

address: NO.18877, Jingshi Road

department: Toxicology Department

institute: Shandong Academy of Occupational Health and Occupational Medicine

organism: Rattus norvegicus


title: Illumina HiSeq 2000 (Mallotus japonicus)

organism: Mallotus japonicus


title: SOMAscan mouse proteomic assay

status: Public on Sep 16 2020

city: Farmington

first: Harshpreet

last: Chandok

state: CT

address: 10 Discovery Dr

institute: The Jackson Laboratory

organism: Mus musculus


title: Illumina HiSeq 2500 (Mycobacterium tuberculosis str. Erdman = ATCC 35801)


title: NextSeq 2000 (Enterococcus faecalis)

organism: Enterococcus faecalis


title: Illumina HiSeq 4000 (Populus deltoides x Populus x canadensis)


title: [OviGene-1_0-st] Ovine Gene 1.0 ST Array [Gene name version]

status: Public on May 22 2018

city: Aurora

first: Reuben

middle: Blair

last: Dodson

address: 13123 East 16th Ave

department: Surgery

institute: University of Colorado Denver

organism: Ovis aries

manufacture_protocol: see manufacturer's web site


title: Illumina NovaSeq 6000 (Ictidomys tridecemlineatus)

organism: Ictidomys tridecemlineatus


title: [OviGene-1_0-st] Ovine Gene 1.0 ST Array [transcript (gene) version]

status: Public on Aug 21 2015

city: Darlinghurst

first: Tim

last: Molloy

state: NSW

address: Level 8, 405 Liverpool St

department: Haematology

country: Australia

institute: St Vincent's Centre for Applied Medical Research

description:
#%create_date=Wed Apr  2 21:43:34 2014 PDT
#%chip_type=OviGene-1_0-st-v1
#%lib_set_name=OviGene-1_0-st
#%lib_set_version=v1
#%genome-version=oar2
#%genome-version-ucsc=oar2
#%genome-lifted-method=NONE
#%genome-lifted_from-version-ucsc=oar2.0
#%netaffx-annotation-date=2013-08-30
#%netaffx-annotation-netaffx-build=34
#%netaffx-annotation-tabular-data-version=1.1
#%netaffx-annotation-tabular-format-version=1.1
#%netaffx-annotation-data-type=transcript_cluster
#%netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl
#%netaffx-annotation-docgen-version=8487
#%netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk=
#%netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
## probeset_id refers to the transcript cluster id

relation: Alternative to: GPL24566 (gene name version)


title: Illumina HiSeq 4000 (Purpureocillium lilacinum)

organism: Purpureocillium lilacinum


title: Illumina HiSeq 4000 (Phalacrocorax auritus)

organism: Phalacrocorax auritus